Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Mild[Aichi] genomic DNA, complete sequence.
ACC No: AB014347
Dated: 2009-01-13 | Length: 2787 | CRC: -1066655273
ID AB014347; SV 1; circular; genomic DNA; STD; VRL; 2787 BP.
XX
AC AB014347;
XX
DT 28-JAN-1999 (Rel. 58, Created)
DT 13-JAN-2009 (Rel. 99, Last updated, Version 6)
XX
DE Tomato yellow leaf curl virus - Mild[Aichi] genomic DNA, complete sequence.
XX
KW .
XX
OS Tomato yellow leaf curl virus - Mild[Aichi]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2787
RA Fuji S., Kato K., Onuki M., Hanada K.;
RT ;
RL Submitted (18-MAY-1998) to the EMBL/GenBank/DDBJ databases.
RL Contact:Kimihiko Kato Shizuoka Agricultural Experiment Station, Plant
RL Breeding Division; 678-1 Tomioka, Toyoda-Cho, Iwata-Gun, Shizuoka 438-0803,
RL Japan
XX
RN [2]
RA Kato K., Onuki M., Fuji S., Hanada K.;
RT "The first occurrence of tomato yellow leaf curl virus in tomato
RT (Lycopersicon esculentum Mill.), in Japan";
RL Nippon Shokubutsu Byori Gakkaiho 64:552-559(1998).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2787
FT /organism="Tomato yellow leaf curl virus - Mild[Aichi]"
FT /host="Lycopersicon esculentum"
FT /strain="Aichi"
FT /isolate="Gemini-A"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:270152"
FT TATA_signal complement(63. .68)
FT TATA_signal 279. .284
FT CDS 314. .664
FT /codon_start=1
FT /transl_table=1
FT /gene="V1"
FT /product="precoat"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q786K3"
FT /protein_id="BAA74442.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT CDS 474. .1250
FT /codon_start=1
FT /transl_table=1
FT /gene="V2"
FT /product="coat protein"
FT /db_xref="GOA:Q9YZV3"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q9YZV3"
FT /protein_id="BAA74443.1"
FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCESPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1247. .1651)
FT /codon_start=1
FT /transl_table=1
FT /gene="C3"
FT /note="protein involved in a virus replication"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q9YJM2"
FT /protein_id="BAA74444.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRHQVLKYLDSIGVISINN
FT VIRAVDHVLYDVLEKTINVTETHDIKYKFY"
FT polyA_signal 1249. .1254
FT polyA_signal complement(1287. .1292)
FT CDS complement(1392. .1799)
FT /codon_start=1
FT /transl_table=1
FT /gene="C2"
FT /note="protein involved in virus movement"
FT /db_xref="GOA:Q9W825"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q9W825"
FT /protein_id="BAA74445.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVNLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGTGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1708. .2787)
FT /codon_start=1
FT /transl_table=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:Q9YZV2"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q9YZV2"
FT /protein_id="BAA74446.1"
FT /translation="MAPPKRFQINCKNYFLTYPKCSLTKEEALSQLKDLETPTNKKYIK
FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYV
FT DKDGDTVDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRIIKELIPKDYILQFH
FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVVSSAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL
FT FASINQGPTQDSQEETNKA"
FT CDS complement(2328. .2630)
FT /codon_start=1
FT /transl_table=1
FT /gene="C4"
FT /note="protein involved in virus movement"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q9YIX2"
FT /protein_id="BAA74447.1"
FT /translation="MGNHISMCLSNLKGNSSAKISDSSTWYPQAGQHISIQTFRELNPV
FT QTSSLMSIRTETPSTGVSFRSTDDLHVGVSSQPMTLTPQLLTQAVSQRLLESLKN"
XX
SQ Sequence 2787 BP; 763 A; 541 C; 609 G; 874 T; 0 other;
ab014347 Length: 2787 13-JAN-2009 Type: N Check: 7480 ..
1 atggtcaatg agtaccgatt gaccaagatt tttacactta tccctggtgt
51 atcggtactc aatatatagt gagtaccaaa tggcattttg gtaattttgt
101 aaaagtacat tgcaattcaa aattcaaaat tcaaaaatca aatcattaaa
151 gcggccatcc gtataatatt accggatggc cgcgccttta actttatgcc
201 cggtccccac gagggttcca cagtctatta accaatcaaa ttgcatcctc
251 aaacgttaga taagtgttca tttgtcttta tatacttggt ccccaagtat
301 tttgtcttgc aatatgtggg atccacttct aaatgaattt cctgaatctg
351 ttcacggatt tcgttgtatg ttagctatta aatatttgca gtccgttgag
401 gaaacttacg agcccaatac attgggccac gatttaatta gggatcttat
451 atctgttgta agggcccgtg actatgtcga agcgaccagg cgatataatc
501 atttccacgc ccgcctcgaa ggttcgccga aggctgaact tcgacagccc
551 atacagcagc cgtgctgctg tccccattgt ccaaggcaca aacaagcgac
601 gatcatggac gtacaggccc atgtaccgga agcccagaat atacagaatg
651 tatcgaagcc ctgatgttcc ccgtggatgt gaaagcccat gtaaagtaca
701 gtcttatgag caacgggatg atattaagca tactggtatt gttcgttgtg
751 ttagtgatgt tactcgtgga tctggaatta ctcacagagt gggtaagagg
801 ttctgtgtta aatcgatata ttttttaggt aaagtctgga tggatgaaaa
851 tatcaagaag cagaatcaca ctaatcaggt catgttcttc ttggtccgtg
901 atagaaggcc ctatggaaac agcccaatgg attttggaca ggtttttaat
951 atgttcgata atgagcccag taccgcaaca gtgaagaatg atttgcggga
1001 taggtttcaa gtgatgagga aatttcatgc tacagttatt ggtgggccct
1051 ctggaatgaa ggaacaggca ttagttaaga gattttttag aattaacagt
1101 catgtaactt ataatcatca ggaggcagcc aagtacgaga accatactga
1151 aaacgccttg ttattgtata tggcatgtac gcatgcctct aatccagtgt
1201 atgcaactat gaaaatacgc atctatttct atgattcaat atcaaattaa
1251 taaaatttat attttatatc atgagtttct gttacattta ttgtcttttc
1301 aagtacatca tacaatacat gatcaactgc tctgattaca ttgttaattg
1351 aaattacacc aatactatct aaatacttaa gaacttgatg tctaaatact
1401 cttaagaaac gaccagtctg aggctgtaat gtcgtccaaa ttcggaagtt
1451 gagaaaacat ttgtgaatcc ccagtacctt cctgatgttg tggttgaatc
1501 ttatctgaat ggaaatgatg tcgtggttca ttagaaatgg cctctggctg
1551 tgttctgtta tcttgaaata gaggggattg tttatctccc agataaaaac
1601 gccattctct gcttgaggag cagtgatgag ttcccctgtg cgtgaatcca
1651 tgattgttgc agttgaggtg gaggtagtat gagcagccac agtctaggtt
1701 tacacgctta cgccttattg gtttcttctt ggctatcttg tgttggacct
1751 tgattgatac ttgcgaacag tggctcgtag agggtgacga aggttgcatt
1801 cttgagagcc caatttttca aggatatgtt tttttcttcg tctagatatt
1851 ccctatatga ggaggtaggt cctggattgc agaggaagat agtgggaatt
1901 ccccctttaa tttgaatggg cttcccgtac tttgtgttgc tttgccagtc
1951 cctctgggcc cccatgaatt ccttgaagtg ctttaaataa tgcgggtcta
2001 cgtcatcaat gacgttgtac cacgcatcat tactgtacac ctttggactt
2051 aggtctagat gtccacataa ataattatgt gggcctagag acctggccca
2101 cattgttttg cctgttctgc tatcaccctc aatgacaata ctattaggtc
2151 tccatggccg cgcagcggaa gacacgacgt tctcggacac ccatacttca
2201 agttcatctg gaacttgatt aaaagatgaa gataaaaagg gagaaatata
2251 aggagccgga ggctcctgaa aaattctatc taaattacta tttaaattat
2301 gaaattgtaa aatataatct tttggtatta attctttaat gattctaaga
2351 gcctctgact tactgcctga gttaagagct gcggcgtaag cgtcattggc
2401 tgactgctga cccccacgtg cagatcgtcc gtcgatctga aactcacccc
2451 agtcgacggt gtctccgtcc ttatcgacat aagacttgac gtctgaactg
2501 gatttagctc cctgaatgtt tggatggaaa tgtgctgccc tgcttgggga
2551 taccaggtcg aagaatcgct gattttggca cttgaatttc ccttcaaatt
2601 ggataagcac atggagatgt ggttccccat tctcgtggag ttctctgcaa
2651 actttgatgt attttttatt tgttggggtt tctaggtctt ttaattggga
2701 aagtgcttct tctttcgtta aggagcactt aggatatgtg aggaaataat
2751 ttttgcaatt tatttggaag cgcttagggg gagccat