Sequence of DPV Red clover necrotic mosaic virus
Red clover necrotic mosaic virus genes for 27 kDa protein, 57 kDa protein, 36 kDa coat protein, 88 kDa protein, complete cds.
ACC No: AB034916
Dated: 2006-06-04 | Length: 3890 | CRC: -349797427
ID AB034916 standard; genomic RNA; VRL; 3890 BP. XX AC AB034916; XX SV AB034916.1 XX DT 16-NOV-1999 (Rel. 61, Created) DT 04-JUN-2006 (Rel. 88, Last updated, Version 5) XX DE Red clover necrotic mosaic virus genes for 27 kDa protein, 57 kDa protein, DE 36 kDa coat protein, 88 kDa protein, complete cds. XX KW . XX OS Red clover necrotic mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Dianthovirus. XX RN [1] RP 1-3890 RA Mizumoto H., Hikichi Y., Okuno T.; RT ; RL Submitted (10-NOV-1999) to the EMBL/GenBank/DDBJ databases. RL Tetsuro Okuno, Kochi University, Laboratory of Plant Pathology and RL Biotechnology; Monobe 200, Nankoku, Kochi 783-8502, Japan RL (E-mail:okuno@cc.kochi-u.ac.jp, Tel:+81-888-864-5196, Fax:+81-888-864-5219) XX RN [2] RA Mizumoto H., Hikichi Y., Okuno T.; RT "Red clover necrotic mosaic virus Canadian strain (RCNMV-Can) RNA1"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .3890 FT /organism="Red clover necrotic mosaic virus" FT /segment="1" FT /strain="RCNMV-Can" FT /mol_type="genomic RNA" FT /note="Canadian strain" FT /db_xref="taxon:12267" FT CDS join(124. .831,834. .2426) FT /codon_start=1 FT /transl_table=1 FT /ribosomal_slippage FT /product="88 kDa protein" FT /note="-1 ribosome frameshifting" FT /db_xref="GOA:Q9QMG1" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007095" FT /db_xref="UniProtKB/TrEMBL:Q9QMG1" FT /protein_id="BAA86872.1" FT /translation="MGFVNFSLFDVDKLMVWVSKFNPGKILSAICNLGIDCWNRFRKWY FT FGLNFDAHMWAVDAFMPLMPHYTEQMERVVGDLCSETLESKLEDCLELDTSVNQYFDEE FT VYKEDDKGVMKLQRSAARKHIKRVRPGMMTAAIKAVETRIRNRHAIFGDNMGLIDEAAV FT RATASDICGEFKINEHHTRTLVYTAAYLSMTPDQKSLDSVKLAYNPKSQARRTLVTAVR FT ENKAVAGFKSLEDFGGPLSFPVEDAPYPILGIPEIRVAEKRASRVMRSKRVVGLPAVSA FT GLKVCVHQTSLHNMIVSLERRVFRVKNAAGELVVPPKPIQNAFDSISYFREEWLRKLSH FT KGQVLKSSIDDVVACYSSEKRKLYQKAADSLEKKPVQWRDSKVQAFIKVEKLECDTKDP FT VPRTIQPRSKRYNLCIGQYLRLNEKKMLDSIDDVFKEKTVLSGLDNRAQGRAIAHKWRK FT YQNPIGIGLDASRFDQHCSVDALKFEHTFYKACFPGDQQLEQLLKWQLSNTGSALLPTG FT ELVRYRTKGCRMSGDINTGLGNKILMCSMVHAFLKEAGVRASLANNGDDCVLFCEKGDY FT DEINRNLEQWFLCRGFEMTVEKPVDVLEKVAFCRSQPVCIATQWAMVRQLGSLSRDCFS FT TQDWLNPKTFKDAMNALGQCNGIINDGVPIHMAQAKLMHKIGGNRKFNLDALHKQMEYS FT WRDRLGKRTNLLWSEVEDATRLSYFKAFGIEPYIQKIVEEYFSQVEITCEGRSTNVLPA FT HYSRIHKDLIKSR" FT CDS 124. .834 FT /codon_start=1 FT /transl_table=1 FT /product="27 kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q9QMG0" FT /protein_id="BAA86873.1" FT /translation="MGFVNFSLFDVDKLMVWVSKFNPGKILSAICNLGIDCWNRFRKWY FT FGLNFDAHMWAVDAFMPLMPHYTEQMERVVGDLCSETLESKLEDCLELDTSVNQYFDEE FT VYKEDDKGVMKLQRSAARKHIKRVRPGMMTAAIKAVETRIRNRHAIFGDNMGLIDEAAV FT RATASDICGEFKINEHHTRTLVYTAAYLSMTPDQKSLDSVKLAYNPKSQARRTLVTAVR FT ENKAVAGFKSLEDF" FT CDS 927. .2426 FT /codon_start=1 FT /transl_table=1 FT /product="57 kDa protein" FT /db_xref="GOA:Q9QMF9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007095" FT /db_xref="UniProtKB/TrEMBL:Q9QMF9" FT /protein_id="BAA86874.1" FT /translation="MRSKRVVGLPAVSAGLKVCVHQTSLHNMIVSLERRVFRVKNAAGE FT LVVPPKPIQNAFDSISYFREEWLRKLSHKGQVLKSSIDDVVACYSSEKRKLYQKAADSL FT EKKPVQWRDSKVQAFIKVEKLECDTKDPVPRTIQPRSKRYNLCIGQYLRLNEKKMLDSI FT DDVFKEKTVLSGLDNRAQGRAIAHKWRKYQNPIGIGLDASRFDQHCSVDALKFEHTFYK FT ACFPGDQQLEQLLKWQLSNTGSALLPTGELVRYRTKGCRMSGDINTGLGNKILMCSMVH FT AFLKEAGVRASLANNGDDCVLFCEKGDYDEINRNLEQWFLCRGFEMTVEKPVDVLEKVA FT FCRSQPVCIATQWAMVRQLGSLSRDCFSTQDWLNPKTFKDAMNALGQCNGIINDGVPIH FT MAQAKLMHKIGGNRKFNLDALHKQMEYSWRDRLGKRTNLLWSEVEDATRLSYFKAFGIE FT PYIQKIVEEYFSQVEITCEGRSTNVLPAHYSRIHKDLIKSR" FT CDS 2428. .3444 FT /codon_start=1 FT /transl_table=1 FT /product="36 kDa coat protein" FT /db_xref="GOA:Q9QMF8" FT /db_xref="HSSP:P11795" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProtKB/TrEMBL:Q9QMF8" FT /protein_id="BAA86875.1" FT /translation="MSSKAPKKSKSRSQPRNRIPNTSIKTVAIPFAKTQIIKTVNPPQR FT PAKALMHTQLVLSVVGTTQLRVNNGKSIQRFRLNPSNPALFPTIAYEAANYDMYRLKKM FT TLRYVPIVTVQNSGRVSMVWDADSRDSAPQSRQETSAYSRSVSTAVYEKCSLTIPADNQ FT WRFIADNTAVDRKLIDFGQLLFVTHSGSEGVEIGDVFFECEVEFKGPQPTATVIQKGVA FT DVGGALSSEGPSYLMSSDLVVTPSGFGMNLDVAGTYLLTLVVAATASGNITVAGNSTLV FT GEARAAYSSGNYIATLVFTSTGVLSATPSIQFTGSSGVTRVQLNLARCKPANTYVTG" XX SQ Sequence 3890 BP; 1120 A; 857 C; 955 G; 958 T; 0 other; ab034916 Length: 3890 04-JUN-2006 Type: N Check: 4519 .. 1 gaacaaacgt tttaccggtt tgtaaattgg aattctcgaa ttcgccagtc 51 gccttcttcg tatcaaggat ctggaatttg aacggtatct ttatcatttt 101 aatttctact tttcgtacca gtcatgggtt ttgtcaactt ttcgcttttt 151 gatgtggaca aattgatggt atgggtgagc aaattcaatc caggcaagat 201 attgtccgct atttgcaact tgggtataga ctgctggaac cgttttcgca 251 aatggtactt cggtctcaac tttgatgcac atatgtgggc tgtcgatgcc 301 tttatgccac tcatgccaca ttacacggag cagatggaac gcgtagtcgg 351 cgacctctgc agcgaaaccc tagaatccaa attagaagac tgtctggaat 401 tggacacttc cgtcaaccag tattttgacg aagaagtgta caaagaggat 451 gacaagggcg tgatgaaact ccaaaggagt gctgccagga agcacattaa 501 acgtgtgcga ccaggtatga tgacagcagc cataaaagct gttgagacga 551 ggatcagaaa ccgccatgcc attttcggag ataacatggg attgatagac 601 gaagctgcag ttagagcaac tgccagtgat atctgtggag agttcaaaat 651 aaatgaacac cacacgagga cattggtata caccgcagca tatctttcca 701 tgacacctga ccagaagtcc ctagacagtg tcaagctcgc ctataatcca 751 aagagtcaag ccagaaggac tttagtgaca gccgttcgtg agaacaaagc 801 tgttgctggg ttcaaatccc ttgaggattt ttaggcggtc cactcagctt 851 tccggttgaa gatgccccat atcctatttt aggcatcccg gaaatcaggg 901 tagctgagaa gcgggccagt agagtcatga gaagtaagag agtcgtaggt 951 ttacctgctg ttagtgcggg tctaaaggtt tgcgtccatc aaacctccct 1001 acataatatg atagttagtc tcgaacgcag agtgttccgt gtaaagaacg 1051 ctgcgggaga gttagtagtg cctcccaaac caatccaaaa tgcatttgac 1101 tccatttcct acttccgcga agagtggttg aggaaattgt ctcataaggg 1151 tcaagtgctc aaatcctcca tagatgacgt tgttgcttgc tattcttctg 1201 aaaagaggaa attgtatcaa aaagcggctg actctctgga gaagaaacct 1251 gtccaatgga gagattccaa ggtgcaagca ttcatcaagg tagaaaaact 1301 tgaatgtgac actaaggatc ccgtgccccg cacgattcaa cctcgatcca 1351 agagatataa tctttgcata ggacaatatc tcaggttgaa tgaaaagaag 1401 atgttggatt ccatagacga tgtcttcaaa gagaagaccg tcttgtcagg 1451 tttggataac agggctcaag ggagagccat cgcccacaag tggcgcaaat 1501 accagaaccc catagggatc gggctagatg cgagtagatt cgatcagcat 1551 tgtagcgtgg atgccctcaa atttgaacac accttttata aagcgtgttt 1601 tcctggggat caacagttgg aacaactatt gaaatggcaa ttatccaaca 1651 ctggatcggc cctattacca actggagaac tggttagata ccgtaccaaa 1701 gggtgtcgca tgagcggcga tataaacaca ggccttggga acaagattct 1751 catgtgcagc atggtacacg cattcctgaa agaggcggga gtgcgggctt 1801 cgttagccaa taatggtgac gattgtgtcc ttttctgtga gaagggagac 1851 tatgatgaga taaaccgcaa tcttgagcaa tggttcctgt gcaggggttt 1901 cgaaatgacc gtcgaaaaac ctgtcgatgt actcgagaag gtggcgttct 1951 gtcgtagtca accagtttgc attgccacgc aatgggctat ggtaaggcaa 2001 ttgggaagtt tgtctagaga ctgtttttca acacaggatt ggttaaaccc 2051 aaagacattc aaagatgcaa tgaacgcgtt ggggcaatgt aacggaatca 2101 tcaatgatgg agttccaata catatggctc aggcgaaatt aatgcataaa 2151 atcggtggaa accggaagtt caatctagat gcactccaca agcaaatgga 2201 gtacagttgg agagatcgtc tcggtaaaag aacgaatctt ttgtggagtg 2251 aggtagagga tgctacgaga ttgtcatact ttaaagcatt cggcatagaa 2301 ccttacattc agaaaatagt ggaggagtac ttctcacaag tggaaatcac 2351 ttgtgagggg cgatcaacaa acgtattacc tgcacactat tctagaatcc 2401 acaaagattt aatcaaatcc cgatagtatg tcttcgaaag ctcccaagaa 2451 atccaaatca cggtcccagc ccaggaaccg gatcccaaac accagtatca 2501 aaactgtagc catcccattt gccaagacgc aaatcatcaa gaccgtgaac 2551 cctccacaaa ggccagctaa agctttaatg cacacccagc tggtactaag 2601 tgttgttgga acgactcaac tgcgtgtgaa caacggcaag tccattcaga 2651 ggttcagatt gaacccaagt aacccagctc tattccccac catagcctat 2701 gaagccgcaa attatgacat gtatcgtctg aagaaaatga cactccgtta 2751 tgtcccgatc gtgaccgtgc aaaattccgg acgcgtatca atggtttggg 2801 atgccgactc tcgggattcg gctccccaat cacgacagga gacatctgct 2851 tattctcgat ctgtctcgac tgccgtgtac gagaaatgct cgttgacgat 2901 tccggctgat aatcaatggc gattcatagc tgacaacaca gccgttgata 2951 gaaaactgat cgactttggc cagttgttgt ttgtcaccca ctccgggagt 3001 gagggagtag aaattggtga tgtgttcttc gagtgtgaag tagaatttaa 3051 aggaccccaa cccaccgcaa cagtcatcca gaagggtgta gctgacgttg 3101 gcggggcact ctcctcagaa ggaccgtctt acttaatgtc ctcggactta 3151 gtcgtcaccc cgtcgggttt cggtatgaac ttggatgtag cagggactta 3201 tctgctaacg ttggtggttg cagcaactgc tagcggaaac atcacagtag 3251 ccggcaattc aacattggtg ggtgaggcaa gggcagcata cagcagcggc 3301 aactacatcg ccactctggt atttactagt accggcgtct tgtcggcgac 3351 acctagtata cagtttacag gatcctccgg agttacacgg gttcaattga 3401 acctcgccag atgtaaaccg gcgaatacct acgtcactgg ttagttggtt 3451 aattggttag cgcagcctcc atccgagttg caagagagga agacgcagtc 3501 tcgccgaccc tgttggcaaa cagtaaaatt gcaaaaaata gagtgttagg 3551 agtagttccc atacccttgg ggacaagaac ctattatgga gaaacgaact 3601 ggcatcggac cctgggaaac aggcatctag cgtattaata ggtcgctaga 3651 agacgggcag gcttcaccac taggtaacct gccgccgaga gggaaaacct 3701 ctgtgtggtt gtgcgcacgt cgttgtcgga agaagttcac catagtagtt 3751 atttcctttt cttttaggta gaagcacttg ctccagaggg cgcatacctc 3801 tggttaaaca aaattgtccc ctgagagtag aaaactcagg ttaataaaac 3851 aggagaatat ttacctagtt gtataacggc taggtacccc