Sequence of DPV Helicobasidium mompa totivirus 1-17
Helicobasidium mompa No.17 dsRNA virus large segment, complete sequence.
ACC No: AB085814
Dated: 2006-10-05 | Length: 5207 | CRC: 156564658
ID AB085814; SV 1; linear; genomic RNA; STD; VRL; 5207 BP. XX AC AB085814; XX DT 14-AUG-2003 (Rel. 76, Created) DT 05-OCT-2006 (Rel. 89, Last updated, Version 2) XX DE Helicobasidium mompa No.17 dsRNA virus large segment, complete sequence. XX KW . XX OS Helicobasidium mompa No.17 dsRNA virus OC Viruses; dsRNA viruses; Totiviridae; Totivirus. XX RN [1] RP 1-5207 RA Osaki H.; RT ; RL Submitted (26-MAY-2002) to the EMBL/GenBank/DDBJ databases. RL Hideki Osaki, National Institute of Fruit Tree Science, Department of Plant RL Protection; 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan RL (E-mail:hideki@affrc.go.jp, Tel:81-298-38-6546, Fax:81-298-38-6546) XX RN [2] RA Nomura K., Osaki H., Iwanami T., Matsumoto N., Ohtsu Y.; RT "Cloning and Characterization of a Totivirus Double-stranded RNA from the RT Plant Pathogenic Fungus, Helicobasidium mompa Tanaka."; RL Virus Genes 26:219-226(2003). XX FH Key Location/Qualifiers FH FT source 1. .5207 FT /organism="Helicobasidium mompa No.17 dsRNA virus" FT /segment="large" FT /mol_type="genomic RNA" FT /db_xref="taxon:196690" FT CDS 200. .2566 FT /codon_start=1 FT /transl_table=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q76L28" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:Q76L28" FT /protein_id="BAC81753.1" FT /translation="MSSTSETNQVNYLAGVIANPRGGQMGQQYRSTVSTITTMAKVNSN FT ADSRSSVVKYEIGRRHDARRNAFAPYADEAIRVDVSYDTPAIMSETFAGLAKKYSNFSA FT SFERSSLAGIVERLAKVSRCKLLPRCYIGGFDRRARDPVTGLATHFTPVSSLDASVFIP FT RRIDTMTCPGVFAVLCAAVAGEGSQIVTDLIEINVGNNHPIVTTVDVAGLPAACVGALR FT VLGANMIAAGQGDLFGYAVARGIHQVVSVVGHTDEGGVMRDLLRVDGFGAPFGGIHFGL FT PVYTGLPHIDVGNDLQLSGWVDGIALSTAALVAHCDHGVVYNGTWFPTTLSGSAAAPVE FT PGLDAPAGDEGYVARNRNQLADELSPFSLNYANGLAKLFGAGTAGGLTVLHLSGRAGSL FT ADDCRHLNFATANPFFWIESTSILPANFLGTQAETEGRASYGGRCSNSSLPLWNQATCV FT SAVDSAVCEYTVEMASPRRVPFMLHWNGNPRNGLGNILPRQMDPMAIIQPGGAEARSIR FT ERMIANNDLASYLWTRGQSPIAAPGEFMNTSINVGILVKHCETTWDGAVLSHLPSPSEF FT TTGALWLQVGRPTGVAVGPLGKTNANERRARTAATNALLRARHLSRGHNLVAVNMLPLS FT FSAPSFGAPRVIETHDNINRAPPGGGSADTGVGVDRVVNAADAQGPLRPTGRTTSNGCP FT SRQGDQTWRVAVHGLSLSPSTLLRRCLEGGCATRSVAAACRRDSCTGPRNGGGAASGRG FT CRTVGPRMGPTTFRYSRHEAEAMQQDAALQAAGAQ" FT CDS 2563. .5100 FT /codon_start=1 FT /transl_table=1 FT /gene="RDRP" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q76L27" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q76L27" FT /protein_id="BAC81754.1" FT /translation="MKALRAAQDKAGELGPLGSALLERVLAKPEVFERVSRGNIEEQNM FT EVANLQENGMGVDAAAFLSSLSFPIQVKLNQADIITLARLATDTRAYCPLINRTLDTAV FT ARKAGVRSAWTEREGHRLLNNVIGDVNVRKSTVPSEATPAATIKANLSLGRTLLCAPKV FT LGHSIIARIVWNMAGKCSSDVITAAILYTAALLPSHRNRSWRIAVAACLDPKAAKGLST FT AMKSLGANSVQEGAVLVEAQSLQGRMTGACDLAEEASYRCDARKVAEQVISADPEALRD FT SIRWVLNKELANGVDEYQSLDDFWSRRWLWCVNGSHTNASDAKVGIRRKVDLPGIDRVY FT RRMVAEALEEEPISCWDGTTFVSATQKLEHGKTRAIFACDTQNYFRVSHLLGPVQNRWR FT NERILLDPGEGGSLKMAHRMMDMRAAGGLNVMLDYDDFNSHHATETQKILFEELIKHVN FT YDPVLGKTLVDSFDKMYCYIKGVRVGQVLGTMMSGHRGTMFINSVLNAVYIRLATGAAF FT FDPLSSLHAGDDVYAVLPSLSDAKFLLDSCHNFGCRMNSTKQSVGVVCGEFLRMAVTPV FT GAIGYVCRSIASFISGNWSTDAPLTPREYLTNCISQCHTLFNRSNSMHLIQLISDCIHK FT RLNLKRKLCLEMMTGLAAPDGVPLFNTMYGRVYPIVPENWRRRGARFDCACEVHHATSQ FT YSSQHLPPVKVEALTETGTSAASAMQLASYKRAIDSMLSYEPRKVKFGKPRTMNALGLN FT LAKELFTHLLNTGCLEAMPVLRLIQDQIKRPLLRELVLLAGGDGGAADLEVEAWGPQTR FT KCSFFGWIPYSDAAALQKKADHIKIMNHTPVRM" XX SQ Sequence 5207 BP; 1196 A; 1383 C; 1494 G; 1134 T; 0 other; ab085814 Length: 5207 05-OCT-2006 Type: N Check: 2646 .. 1 ttcctcagat ccctagtctg agccacgtgg ataacctttg gtaagggccc 51 gctaaccagt catcgtgctg gggtgcaaac catgctgcag cgctgtatac 101 gtttaccggt gggggcaatg cgtttagtct aggaggaggg ttccttagat 151 cccgaaacga cgcattttct tatcaaacgt ttaacacaaa cctatcacca 201 tgagttccac ttctgagacc aaccaagtca attacttggc aggagtgatc 251 gccaaccctc gaggtgggca gatgggccag caataccgca gtacggtcag 301 caccatcacg acgatggcca aagtgaactc caacgcggac tccaggtcca 351 gcgtggtcaa atacgagatt ggccgccgcc acgatgcgcg tcgcaacgct 401 ttcgcacctt atgcggacga ggccatacgt gtcgatgtct cctatgatac 451 gccagccatc atgagtgaga cttttgctgg gctggccaaa aagtacagca 501 atttcagtgc ttcgttcgag agatcgtcgc tcgctggaat cgttgagcgg 551 ctggcgaaag tgtcgcgctg caagctgcta ccccgatgtt acatcggggg 601 ctttgaccgg cgggcgcgcg atccggtcac ggggttggca acccacttca 651 caccggtgtc gtccctcgac gccagtgtct tcatccccag gcgcatcgat 701 accatgacgt gcccgggggt attcgctgtt ctatgcgcag cagtagcagg 751 agagggcagt cagatcgtga ctgacctgat cgaaatcaat gtgggtaaca 801 accaccccat tgttactacg gtcgacgtag ctggcctccc agcggcttgc 851 gtcggtgcgc ttcgtgtcct gggagctaat atgatcgcgg ctgggcaagg 901 agatttgttt gggtatgcgg tcgcaagggg tattcatcag gtggtaagtg 951 tagtgggcca cactgatgag gggggagtga tgagagactt gttgcgcgtc 1001 gatggcttcg gcgcaccctt cggaggcatc catttcggat tgcccgtgta 1051 caccggcttg ccccatattg atgtgggcaa cgatctccaa cttagcggct 1101 gggttgatgg gatcgcactc tcgacagccg ccctggtcgc acactgtgac 1151 catggtgtag tatataacgg gacctggttc ccaaccactc ttagcggcag 1201 tgcagccgca cctgtggagc caggactcga tgctcctgcg ggcgacgaag 1251 gatacgtcgc tcgcaaccga aaccagttgg ctgatgaact gagccccttc 1301 agcctcaatt acgcaaacgg gctcgcaaaa ctctttggag caggcaccgc 1351 cggcggccta actgtgctcc acctctcagg ccgtgccggc agcctggccg 1401 acgactgccg tcacctcaat ttcgcgacgg ccaacccttt cttctggatc 1451 gagtccacat cgatcctccc ggccaacttt ctcggcacac aagccgagac 1501 agaaggtcgc gctagttacg gagggcgctg ctcaaacagc tcgctcccct 1551 tgtggaatca agcgacgtgc gttagcgccg tcgactccgc ggtgtgtgaa 1601 tacaccgtgg agatggcaag cccacggcgg gtaccgttca tgctccactg 1651 gaacggtaac ccgcggaacg ggctcgggaa catcctcccc aggcagatgg 1701 acccgatggc tattatccag cctgggggcg ctgaggcgcg gtcgatccgt 1751 gagaggatga tcgcgaacaa cgatctggcg tcgtacttgt ggactcgcgg 1801 gcaatcaccg attgctgctc cgggcgagtt catgaatacc agtatcaacg 1851 ttgggatact ggttaagcat tgtgagacaa cgtgggacgg tgcagtcctc 1901 agccacctcc cgagccccag cgaattcaca actggtgcac tctggctcca 1951 agtaggtagg cctactggag tagctgtcgg cccattgggc aaaacgaatg 2001 ccaacgagcg ccgcgcgcgt acagcggcca caaacgcatt gctccgtgct 2051 cgtcatctga gccggggcca caacctcgta gcagtcaaca tgctgcccct 2101 ctctttctcc gcgccctcct ttggcgctcc tcgggtcatt gagacccacg 2151 acaacatcaa ccgcgcacca ccgggtggcg ggtcagcgga cacgggggta 2201 ggtgtagaca gggtggtaaa tgcagcagat gcacaggggc ctttgaggcc 2251 aaccggacgc acgacgtcca acggctgccc cagccgacaa ggggaccaaa 2301 cgtggcgggt ggcggttcac gggctatccc tcagcccgag cacgctcctg 2351 aggcgatgcc tagagggggg ctgcgcaaca agaagcgttg ctgcagcgtg 2401 caggcgagat agctgcacag gacccaggaa tggcgggggg gcagcgagcg 2451 gtcgcggctg ccgaacagtt ggcccaagaa tggggccaac aacctttcga 2501 tatagccggc atgaggctga agccatgcaa caggacgcag ccctgcaagc 2551 tgcgggggct caatgaaggc actgcgcgcg gcccaagata aagcaggaga 2601 acttgggcca cttggcagcg cgctcctgga aagggtttta gcaaaacccg 2651 aagtgtttga gcgggtgagc aggggtaaca ttgaggagca gaatatggag 2701 gtcgctaacc ttcaggagaa cggtatgggt gtggatgcgg cagcttttct 2751 ctcctcgctc tcctttccta ttcaagttaa acttaatcag gcagacataa 2801 ttactttagc tcgtctggct acggataccc gggcgtattg cccgttaatc 2851 aaccgaaccc tagacacggc tgtggctcgt aaagcgggcg taagatcagc 2901 ttggacggaa cgcgaaggcc accgtcttct caacaacgtc attggggatg 2951 tcaacgtacg caaatcaact gttcccagtg aagcgacacc tgcggctacc 3001 atcaaggcta atttaagctt gggtcgcacg ctactatgcg caccaaaggt 3051 gttagggcac tcaatcattg cccgcatagt ctggaacatg gccggtaaat 3101 gtagctcgga tgttataacc gcagctatcc tttacacggc cgcgctacta 3151 ccatcgcacc gcaacagaag ttggcggatc gcggttgcag catgcctcga 3201 ccccaaggct gctaaagggc tttcaacagc catgaaaagt ctgggtgcaa 3251 actcggtcca ggaaggtgca gtcctggttg aggctcagag cttgcagggg 3301 cggatgaccg gtgcttgcga tctagcggag gaagcaagct accggtgcga 3351 tgcgcggaag gtggcagaac aagtaatctc tgccgatccc gaggcactaa 3401 gggactcgat ccgttgggtt ctaaataaag agcttgccaa cggggtggat 3451 gagtaccaga gtctagatga cttttggtcg cgcaggtggt tatggtgcgt 3501 aaatggttct cacaccaacg ctagcgatgc caaggtgggc attaggagga 3551 aagtggatct gccgggaata gatagagtgt acaggcggat ggtggctgag 3601 gctctagagg aggagcctat tagttgttgg gatggtacga ccttcgtatc 3651 tgctactcag aagctggaac atggcaagac cagagctatc ttcgcctgtg 3701 acacccaaaa ctattttcgc gttagccacc tgctaggccc ggttcagaac 3751 cgctggcgga acgaacgtat actgctcgac ccaggggaag gcggctcgct 3801 gaaaatggcc cataggatga tggacatgcg agccgcgggg ggtttgaacg 3851 tgatgttgga ctatgacgat ttcaactcgc accatgctac cgagacgcag 3901 aagattttgt tcgaagaact gatcaagcat gtcaactacg atcctgtact 3951 tggcaagaca ttagtcgata gctttgacaa gatgtactgc tacataaaag 4001 gtgtgagggt cgggcaggtc cttggaacga tgatgagcgg tcacaggggc 4051 actatgttca taaattctgt tcttaatgct gtatatattc gtttggcaac 4101 cggagcagcg ttctttgatc ctctaagcag cctacatgca ggcgatgatg 4151 tatatgccgt tcttccttcc ctctctgatg ctaagtttct tctagattca 4201 tgccataatt tcggctgtcg catgaactcc accaagcagt ctgttggtgt 4251 ggtttgcggc gaatttctca ggatggcggt cacacccgtt ggcgcaatcg 4301 gctacgtctg ccgttccatc gcatcattca ttagcgggaa ctggagtacc 4351 gatgcacctc ttacgccacg tgaatatttg actaattgta tttctcaatg 4401 ccatactctc tttaaccgtt ccaattctat gcatttgatc cagcttattt 4451 ctgattgtat tcataagcga cttaatctaa agcggaagct atgcttggag 4501 atgatgaccg ggctagcggc tccagatggt gttccactct ttaacaccat 4551 gtatggacgt gtgtatccta ttgtgccgga gaattggagg aggagaggag 4601 cgaggttcga ctgcgcttgc gaggtgcatc acgcgaccag ccaatatagc 4651 agtcaacatc ttccccccgt caaggttgaa gccttgactg aaactggcac 4701 tagtgcagcg tcggcgatgc aattggccag ctataaacgc gcaattgata 4751 gcatgctaag ttatgaaccg cgcaaagtca agtttggaaa accgaggacg 4801 atgaatgctc taggtctgaa cctagccaag gaacttttta cgcacctgct 4851 aaacacgggg tgccttgaag caatgccagt acttaggctt attcaagatc 4901 agatcaagcg tccacttctt cgtgagttgg tcttactcgc tggaggtgac 4951 gggggtgcag cagacctaga agtcgaggct tggggacctc aaacccgaaa 5001 gtgttccttc ttcggatgga ttccctactc agacgcagcc gcattacaga 5051 agaaggcgga ccacattaaa ataatgaacc acaccccggt caggatgtga 5101 gtgtgttatt ataccttcga agcagtttcg cgcataaagt gctaccctat 5151 caggagccca ggattgacca tcctgtttta cattaaagcc cgaaagggcc 5201 taaatag