Sequence of DPV Helicobasidium mompa totivirus 1-17

Helicobasidium mompa No.17 dsRNA virus large segment, complete sequence.

ACC No: AB085814

Dated: 2006-10-05 | Length: 5207 | CRC: 156564658

                ID   AB085814; SV 1; linear; genomic RNA; STD; VRL; 5207 BP.
XX
AC   AB085814;
XX
DT   14-AUG-2003 (Rel. 76, Created)
DT   05-OCT-2006 (Rel. 89, Last updated, Version 2)
XX
DE   Helicobasidium mompa No.17 dsRNA virus large segment, complete sequence.
XX
KW   .
XX
OS   Helicobasidium mompa No.17 dsRNA virus
OC   Viruses; dsRNA viruses; Totiviridae; Totivirus.
XX
RN   [1]
RP   1-5207
RA   Osaki H.;
RT   ;
RL   Submitted (26-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   Hideki Osaki, National Institute of Fruit Tree Science, Department of Plant
RL   Protection; 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
RL   (E-mail:hideki@affrc.go.jp, Tel:81-298-38-6546, Fax:81-298-38-6546)
XX
RN   [2]
RA   Nomura K., Osaki H., Iwanami T., Matsumoto N., Ohtsu Y.;
RT   "Cloning and Characterization of a Totivirus Double-stranded RNA from the
RT   Plant Pathogenic Fungus, Helicobasidium mompa Tanaka.";
RL   Virus Genes 26:219-226(2003).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .5207
FT                   /organism="Helicobasidium mompa No.17 dsRNA virus"
FT                   /segment="large"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:196690"
FT   CDS             200. .2566
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q76L28"
FT                   /db_xref="InterPro:IPR008871"
FT                   /db_xref="UniProtKB/TrEMBL:Q76L28"
FT                   /protein_id="BAC81753.1"
FT                   /translation="MSSTSETNQVNYLAGVIANPRGGQMGQQYRSTVSTITTMAKVNSN
FT                   ADSRSSVVKYEIGRRHDARRNAFAPYADEAIRVDVSYDTPAIMSETFAGLAKKYSNFSA
FT                   SFERSSLAGIVERLAKVSRCKLLPRCYIGGFDRRARDPVTGLATHFTPVSSLDASVFIP
FT                   RRIDTMTCPGVFAVLCAAVAGEGSQIVTDLIEINVGNNHPIVTTVDVAGLPAACVGALR
FT                   VLGANMIAAGQGDLFGYAVARGIHQVVSVVGHTDEGGVMRDLLRVDGFGAPFGGIHFGL
FT                   PVYTGLPHIDVGNDLQLSGWVDGIALSTAALVAHCDHGVVYNGTWFPTTLSGSAAAPVE
FT                   PGLDAPAGDEGYVARNRNQLADELSPFSLNYANGLAKLFGAGTAGGLTVLHLSGRAGSL
FT                   ADDCRHLNFATANPFFWIESTSILPANFLGTQAETEGRASYGGRCSNSSLPLWNQATCV
FT                   SAVDSAVCEYTVEMASPRRVPFMLHWNGNPRNGLGNILPRQMDPMAIIQPGGAEARSIR
FT                   ERMIANNDLASYLWTRGQSPIAAPGEFMNTSINVGILVKHCETTWDGAVLSHLPSPSEF
FT                   TTGALWLQVGRPTGVAVGPLGKTNANERRARTAATNALLRARHLSRGHNLVAVNMLPLS
FT                   FSAPSFGAPRVIETHDNINRAPPGGGSADTGVGVDRVVNAADAQGPLRPTGRTTSNGCP
FT                   SRQGDQTWRVAVHGLSLSPSTLLRRCLEGGCATRSVAAACRRDSCTGPRNGGGAASGRG
FT                   CRTVGPRMGPTTFRYSRHEAEAMQQDAALQAAGAQ"
FT   CDS             2563. .5100
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="RDRP"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:Q76L27"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:Q76L27"
FT                   /protein_id="BAC81754.1"
FT                   /translation="MKALRAAQDKAGELGPLGSALLERVLAKPEVFERVSRGNIEEQNM
FT                   EVANLQENGMGVDAAAFLSSLSFPIQVKLNQADIITLARLATDTRAYCPLINRTLDTAV
FT                   ARKAGVRSAWTEREGHRLLNNVIGDVNVRKSTVPSEATPAATIKANLSLGRTLLCAPKV
FT                   LGHSIIARIVWNMAGKCSSDVITAAILYTAALLPSHRNRSWRIAVAACLDPKAAKGLST
FT                   AMKSLGANSVQEGAVLVEAQSLQGRMTGACDLAEEASYRCDARKVAEQVISADPEALRD
FT                   SIRWVLNKELANGVDEYQSLDDFWSRRWLWCVNGSHTNASDAKVGIRRKVDLPGIDRVY
FT                   RRMVAEALEEEPISCWDGTTFVSATQKLEHGKTRAIFACDTQNYFRVSHLLGPVQNRWR
FT                   NERILLDPGEGGSLKMAHRMMDMRAAGGLNVMLDYDDFNSHHATETQKILFEELIKHVN
FT                   YDPVLGKTLVDSFDKMYCYIKGVRVGQVLGTMMSGHRGTMFINSVLNAVYIRLATGAAF
FT                   FDPLSSLHAGDDVYAVLPSLSDAKFLLDSCHNFGCRMNSTKQSVGVVCGEFLRMAVTPV
FT                   GAIGYVCRSIASFISGNWSTDAPLTPREYLTNCISQCHTLFNRSNSMHLIQLISDCIHK
FT                   RLNLKRKLCLEMMTGLAAPDGVPLFNTMYGRVYPIVPENWRRRGARFDCACEVHHATSQ
FT                   YSSQHLPPVKVEALTETGTSAASAMQLASYKRAIDSMLSYEPRKVKFGKPRTMNALGLN
FT                   LAKELFTHLLNTGCLEAMPVLRLIQDQIKRPLLRELVLLAGGDGGAADLEVEAWGPQTR
FT                   KCSFFGWIPYSDAAALQKKADHIKIMNHTPVRM"
XX
SQ   Sequence 5207 BP; 1196 A; 1383 C; 1494 G; 1134 T; 0 other;

ab085814 Length: 5207  05-OCT-2006  Type: N  Check: 2646  ..

       1  ttcctcagat ccctagtctg agccacgtgg ataacctttg gtaagggccc
      51  gctaaccagt catcgtgctg gggtgcaaac catgctgcag cgctgtatac
     101  gtttaccggt gggggcaatg cgtttagtct aggaggaggg ttccttagat
     151  cccgaaacga cgcattttct tatcaaacgt ttaacacaaa cctatcacca
     201  tgagttccac ttctgagacc aaccaagtca attacttggc aggagtgatc
     251  gccaaccctc gaggtgggca gatgggccag caataccgca gtacggtcag
     301  caccatcacg acgatggcca aagtgaactc caacgcggac tccaggtcca
     351  gcgtggtcaa atacgagatt ggccgccgcc acgatgcgcg tcgcaacgct
     401  ttcgcacctt atgcggacga ggccatacgt gtcgatgtct cctatgatac
     451  gccagccatc atgagtgaga cttttgctgg gctggccaaa aagtacagca
     501  atttcagtgc ttcgttcgag agatcgtcgc tcgctggaat cgttgagcgg
     551  ctggcgaaag tgtcgcgctg caagctgcta ccccgatgtt acatcggggg
     601  ctttgaccgg cgggcgcgcg atccggtcac ggggttggca acccacttca
     651  caccggtgtc gtccctcgac gccagtgtct tcatccccag gcgcatcgat
     701  accatgacgt gcccgggggt attcgctgtt ctatgcgcag cagtagcagg
     751  agagggcagt cagatcgtga ctgacctgat cgaaatcaat gtgggtaaca
     801  accaccccat tgttactacg gtcgacgtag ctggcctccc agcggcttgc
     851  gtcggtgcgc ttcgtgtcct gggagctaat atgatcgcgg ctgggcaagg
     901  agatttgttt gggtatgcgg tcgcaagggg tattcatcag gtggtaagtg
     951  tagtgggcca cactgatgag gggggagtga tgagagactt gttgcgcgtc
    1001  gatggcttcg gcgcaccctt cggaggcatc catttcggat tgcccgtgta
    1051  caccggcttg ccccatattg atgtgggcaa cgatctccaa cttagcggct
    1101  gggttgatgg gatcgcactc tcgacagccg ccctggtcgc acactgtgac
    1151  catggtgtag tatataacgg gacctggttc ccaaccactc ttagcggcag
    1201  tgcagccgca cctgtggagc caggactcga tgctcctgcg ggcgacgaag
    1251  gatacgtcgc tcgcaaccga aaccagttgg ctgatgaact gagccccttc
    1301  agcctcaatt acgcaaacgg gctcgcaaaa ctctttggag caggcaccgc
    1351  cggcggccta actgtgctcc acctctcagg ccgtgccggc agcctggccg
    1401  acgactgccg tcacctcaat ttcgcgacgg ccaacccttt cttctggatc
    1451  gagtccacat cgatcctccc ggccaacttt ctcggcacac aagccgagac
    1501  agaaggtcgc gctagttacg gagggcgctg ctcaaacagc tcgctcccct
    1551  tgtggaatca agcgacgtgc gttagcgccg tcgactccgc ggtgtgtgaa
    1601  tacaccgtgg agatggcaag cccacggcgg gtaccgttca tgctccactg
    1651  gaacggtaac ccgcggaacg ggctcgggaa catcctcccc aggcagatgg
    1701  acccgatggc tattatccag cctgggggcg ctgaggcgcg gtcgatccgt
    1751  gagaggatga tcgcgaacaa cgatctggcg tcgtacttgt ggactcgcgg
    1801  gcaatcaccg attgctgctc cgggcgagtt catgaatacc agtatcaacg
    1851  ttgggatact ggttaagcat tgtgagacaa cgtgggacgg tgcagtcctc
    1901  agccacctcc cgagccccag cgaattcaca actggtgcac tctggctcca
    1951  agtaggtagg cctactggag tagctgtcgg cccattgggc aaaacgaatg
    2001  ccaacgagcg ccgcgcgcgt acagcggcca caaacgcatt gctccgtgct
    2051  cgtcatctga gccggggcca caacctcgta gcagtcaaca tgctgcccct
    2101  ctctttctcc gcgccctcct ttggcgctcc tcgggtcatt gagacccacg
    2151  acaacatcaa ccgcgcacca ccgggtggcg ggtcagcgga cacgggggta
    2201  ggtgtagaca gggtggtaaa tgcagcagat gcacaggggc ctttgaggcc
    2251  aaccggacgc acgacgtcca acggctgccc cagccgacaa ggggaccaaa
    2301  cgtggcgggt ggcggttcac gggctatccc tcagcccgag cacgctcctg
    2351  aggcgatgcc tagagggggg ctgcgcaaca agaagcgttg ctgcagcgtg
    2401  caggcgagat agctgcacag gacccaggaa tggcgggggg gcagcgagcg
    2451  gtcgcggctg ccgaacagtt ggcccaagaa tggggccaac aacctttcga
    2501  tatagccggc atgaggctga agccatgcaa caggacgcag ccctgcaagc
    2551  tgcgggggct caatgaaggc actgcgcgcg gcccaagata aagcaggaga
    2601  acttgggcca cttggcagcg cgctcctgga aagggtttta gcaaaacccg
    2651  aagtgtttga gcgggtgagc aggggtaaca ttgaggagca gaatatggag
    2701  gtcgctaacc ttcaggagaa cggtatgggt gtggatgcgg cagcttttct
    2751  ctcctcgctc tcctttccta ttcaagttaa acttaatcag gcagacataa
    2801  ttactttagc tcgtctggct acggataccc gggcgtattg cccgttaatc
    2851  aaccgaaccc tagacacggc tgtggctcgt aaagcgggcg taagatcagc
    2901  ttggacggaa cgcgaaggcc accgtcttct caacaacgtc attggggatg
    2951  tcaacgtacg caaatcaact gttcccagtg aagcgacacc tgcggctacc
    3001  atcaaggcta atttaagctt gggtcgcacg ctactatgcg caccaaaggt
    3051  gttagggcac tcaatcattg cccgcatagt ctggaacatg gccggtaaat
    3101  gtagctcgga tgttataacc gcagctatcc tttacacggc cgcgctacta
    3151  ccatcgcacc gcaacagaag ttggcggatc gcggttgcag catgcctcga
    3201  ccccaaggct gctaaagggc tttcaacagc catgaaaagt ctgggtgcaa
    3251  actcggtcca ggaaggtgca gtcctggttg aggctcagag cttgcagggg
    3301  cggatgaccg gtgcttgcga tctagcggag gaagcaagct accggtgcga
    3351  tgcgcggaag gtggcagaac aagtaatctc tgccgatccc gaggcactaa
    3401  gggactcgat ccgttgggtt ctaaataaag agcttgccaa cggggtggat
    3451  gagtaccaga gtctagatga cttttggtcg cgcaggtggt tatggtgcgt
    3501  aaatggttct cacaccaacg ctagcgatgc caaggtgggc attaggagga
    3551  aagtggatct gccgggaata gatagagtgt acaggcggat ggtggctgag
    3601  gctctagagg aggagcctat tagttgttgg gatggtacga ccttcgtatc
    3651  tgctactcag aagctggaac atggcaagac cagagctatc ttcgcctgtg
    3701  acacccaaaa ctattttcgc gttagccacc tgctaggccc ggttcagaac
    3751  cgctggcgga acgaacgtat actgctcgac ccaggggaag gcggctcgct
    3801  gaaaatggcc cataggatga tggacatgcg agccgcgggg ggtttgaacg
    3851  tgatgttgga ctatgacgat ttcaactcgc accatgctac cgagacgcag
    3901  aagattttgt tcgaagaact gatcaagcat gtcaactacg atcctgtact
    3951  tggcaagaca ttagtcgata gctttgacaa gatgtactgc tacataaaag
    4001  gtgtgagggt cgggcaggtc cttggaacga tgatgagcgg tcacaggggc
    4051  actatgttca taaattctgt tcttaatgct gtatatattc gtttggcaac
    4101  cggagcagcg ttctttgatc ctctaagcag cctacatgca ggcgatgatg
    4151  tatatgccgt tcttccttcc ctctctgatg ctaagtttct tctagattca
    4201  tgccataatt tcggctgtcg catgaactcc accaagcagt ctgttggtgt
    4251  ggtttgcggc gaatttctca ggatggcggt cacacccgtt ggcgcaatcg
    4301  gctacgtctg ccgttccatc gcatcattca ttagcgggaa ctggagtacc
    4351  gatgcacctc ttacgccacg tgaatatttg actaattgta tttctcaatg
    4401  ccatactctc tttaaccgtt ccaattctat gcatttgatc cagcttattt
    4451  ctgattgtat tcataagcga cttaatctaa agcggaagct atgcttggag
    4501  atgatgaccg ggctagcggc tccagatggt gttccactct ttaacaccat
    4551  gtatggacgt gtgtatccta ttgtgccgga gaattggagg aggagaggag
    4601  cgaggttcga ctgcgcttgc gaggtgcatc acgcgaccag ccaatatagc
    4651  agtcaacatc ttccccccgt caaggttgaa gccttgactg aaactggcac
    4701  tagtgcagcg tcggcgatgc aattggccag ctataaacgc gcaattgata
    4751  gcatgctaag ttatgaaccg cgcaaagtca agtttggaaa accgaggacg
    4801  atgaatgctc taggtctgaa cctagccaag gaacttttta cgcacctgct
    4851  aaacacgggg tgccttgaag caatgccagt acttaggctt attcaagatc
    4901  agatcaagcg tccacttctt cgtgagttgg tcttactcgc tggaggtgac
    4951  gggggtgcag cagacctaga agtcgaggct tggggacctc aaacccgaaa
    5001  gtgttccttc ttcggatgga ttccctactc agacgcagcc gcattacaga
    5051  agaaggcgga ccacattaaa ataatgaacc acaccccggt caggatgtga
    5101  gtgtgttatt ataccttcga agcagtttcg cgcataaagt gctaccctat
    5151  caggagccca ggattgacca tcctgtttta cattaaagcc cgaaagggcc
    5201  taaatag