Sequence of DPV Honeysuckle yellow vein mosaic virus

Honeysuckle yellow vein mosaic virus V1, C3, C2 genes for coat protein, replication enhancer protein, transcriptional transactivator protein, complete cds, isolate: KM25.

ACC No: AB108837

Dated: 2008-06-21 | Length: 1570 | CRC: 1576446290

                
ID   AB108837; SV 1; linear; genomic DNA; STD; VRL; 1570 BP.
XX
AC   AB108837;
XX
DT   22-APR-2003 (Rel. 75, Created)
DT   21-JUN-2008 (Rel. 96, Last updated, Version 3)
XX
DE   Honeysuckle yellow vein mosaic virus V1, C3, C2 genes for coat protein,
DE   replication enhancer protein, transcriptional transactivator protein,
DE   complete cds, isolate: KM25.
XX
KW   .
XX
OS   Honeysuckle yellow vein mosaic virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1570
RA   Takanami Y., Komuta K.;
RT   ;
RL   Submitted (18-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Yoichi Takanami Kyushu University, Graduated school of Bioresource
RL   and Bioenvironmental Sciences; 6-10-1, Hakozaki, Higashi-ku, Fukuoka,
RL   Fukuoka 812-8581, Japan
XX
RN   [2]
RA   Takanami Y., Komuta K.;
RT   "Diversity of Honeysuckle-infecting geminivirus (HsGV) in Japan";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1570
FT                   /organism="Honeysuckle yellow vein mosaic virus"
FT                   /isolate="KM25"
FT                   /mol_type="genomic DNA"
FT                   /country="Japan:Kumamoto"
FT                   /note="synonym: Honeysuckle-infecting geminivirus"
FT                   /db_xref="taxon:180587"
FT   CDS             97. .870
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q80GK2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q80GK2"
FT                   /protein_id="BAC75812.1"
FT                   /translation="MSKRPADIGIFTPAFRARRRLNFDGPYVSRVNVPIAQGTSKKRSW
FT                   AQRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSFEKKDDVGHSGKMLCISDITRGNGLTH
FT                   RVGKRFCIKSVYIIGKIWMDENIKLKNHTNNVIFWLVRDRRPVSVPYGFQEAFNMYENE
FT                   PSTATIKQDLRDRLQVLHKFTGTVTGGQYASKEQAMIKRFWRLNHHVTYNHQEAAKYEN
FT                   HTENALLLYMACTHASDPVYATLKIRVYFYDSVQN"
FT   CDS             complement(867. .1271)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="C3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q80GK1"
FT                   /protein_id="BAC75813.1"
FT                   /translation="MDSRTGDTITAAQARNGAYIWTVPNPLYFKITSHAQQPFNMDQDI
FT                   ITVQIQFNHNLRNQLEIHKCFLSFRIWTHLHPQTSHFLKIFRTQVLKYLDNLGVISINN
FT                   VIKAVDHVLYDVLEGTEYVQQFTDIKFKLY"
FT   CDS             complement(1012. .1419)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="C2"
FT                   /product="transcriptional transactivator protein"
FT                   /db_xref="GOA:Q80GK0"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q80GK0"
FT                   /protein_id="BAC75814.1"
FT                   /translation="MQPSSPSTAHSTQVPIKVLHRSGKRRQPRRRRTDINCGCSIYVAI
FT                   GCANHGFTHRGHHHCSSGKEWRVYLDSAKSPIFQNHEPRPTTIQHGSGYHNCTDTIQPQ
FT                   PQESTGDTQVLPLFQNLDSLTSSDLAFLENI"
XX
SQ   Sequence 1570 BP; 418 A; 300 C; 366 G; 486 T; 0 other;

ab108837 Length: 1570  21-JUN-2008  Type: N  Check: 4788  ..

       1  ttaaatacct tcttctggtt gagtctacat actctcctga tacggtgggt
      51  tacgatctga tccgtgatct tataggtgtt gttcgtgcga agaattatgt
     101  cgaagcgacc tgcagatata gggattttca ctcccgcatt cagggcacgt
     151  cgccgtctga acttcgacgg cccgtatgtc agccgtgtga atgtccccat
     201  tgcccaaggc acaagcaaaa agagatcatg ggctcaaagg cccatgtatc
     251  ggaagcccag gatatacagg atgtacagaa gccctgatgt acctaagggt
     301  tgtgaaggtc cctgtaaggt ccaatctttc gagaagaaag atgatgttgg
     351  tcactctggt aaaatgttat gtatctctga tattactcgt ggtaatgggc
     401  ttacacatcg tgttggcaag aggttttgta taaaatcagt ctatatcatt
     451  ggaaagatat ggatggatga gaacattaag ctgaagaatc atactaataa
     501  cgtgatcttc tggcttgtga gagataggcg ccctgtttcc gttccttatg
     551  gtttccaaga ggcgtttaat atgtatgaaa atgaacctag tacagctact
     601  attaaacaag atttgagaga ccgccttcag gttttacaca agttcactgg
     651  tacggttaca ggtggacaat atgcgtctaa agaacaggct atgatcaagc
     701  gtttctggag gttgaatcat catgtcacat acaatcacca agaggctgct
     751  aaatatgaga atcatactga gaatgctttg ttattgtata tggcatgtac
     801  tcatgccagt gatccagtgt atgctacatt aaaaattaga gtgtatttct
     851  acgattcagt acagaattaa taaagcttga attttatatc agtaaattgt
     901  tgtacatact ctgttccttc taatacatcg tacaatacat gatcaactgc
     951  cttaattaca ttgttaattg aaattacacc caaattatct aaatacttca
    1001  acacttgtgt cctaaatatt ttcaagaaat gcgaggtctg aggatgtaag
    1051  tgagtccaaa ttctgaaaga gaggaagcac ttgtgtatct ccagttgatt
    1101  cctgaggttg tggttgaatt gtatctgtac agttatgata tcctgatcca
    1151  tgttgaatgg ttgttgggcg tggctcgtga ttttgaaata taggggattt
    1201  ggcactgtcc agatatacgc gccattcctt gcctgagctg cagtgatggt
    1251  gtcccctgtg cgtgaatcca tgatttgcgc agcctattgc gacgtatata
    1301  gaacacccgc agtttatgtc agtcctcctc ctgcgtggtt gtctcctctt
    1351  ccctgatctg tgtagcacct tgatgggaac ctgagtagag tgggccgtag
    1401  agggtgatga aggttgcatt tttaattgcc caggccttta gggcagtatt
    1451  cttgtcctcg tctaaatact cggtgtatga tgacgtagga cctggattgc
    1501  agaggaagat tgtcaggata ccacctttaa tttgaattgg tttcccgtac
    1551  ttggtgttgc tttgccagtc