Sequence of DPV Potato mop-top virus
Potato mop-top virus genomic RNA, segment RNA 2, complete sequence, isolate: Hiroshima.
ACC No: AB491171
Dated: 2013-03-11 | Length: 3133 | CRC: 809737442
ID AB491171; SV 1; linear; genomic RNA; STD; VRL; 3133 BP.
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AC AB491171;
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DT 11-MAR-2013 (Rel. 116, Created)
DT 11-MAR-2013 (Rel. 116, Last updated, Version 1)
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DE Potato mop-top virus genomic RNA, segment RNA 2, complete sequence,
DE isolate: Hiroshima.
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KW .
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OS Potato mop-top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC Pomovirus.
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RN [1]
RP 1-3133
RA Hataya T.;
RT ;
RL Submitted (16-MAR-2009) to the INSDC.
RL Contact:Tatsuji Hataya Hokkaido University, Research Faculty of
RL Agriculture; Kita-ku, Kita 9, Nishi 9, Sapporo, Hokkaido 060-8589, Japan
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RN [2]
RA Hataya T., Nakayama T., Maoka T.;
RT "Molecular detection and characterization of Japanese Potato mop-top virus
RT isolates in potato tubers and soil by reverse transcription-polymerase
RT chain reaction followed by microplate hybridization";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .3133
FT /organism="Potato mop-top virus"
FT /segment="RNA 2"
FT /host="Solanum tuberosum"
FT /lab_host="Nicotiana benthamiana"
FT /isolate="Hiroshima (H)"
FT /mol_type="genomic RNA"
FT /country="Japan:Hiroshima"
FT /collection_date="1980"
FT /note="Complete sequence of RNA 2 of PMTV-H"
FT /db_xref="taxon:37128"
FT CDS 314. .2791
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:842. .844,aa:OTHER)
FT /product="readthrough protein"
FT /note="readthrough amber stop codon"
FT /protein_id="BAM95900.1"
FT /translation="MAENRGERRAAVENRYDSWDHEQAMKAAVRKFISYDQFSAQLRNW
FT REARLNIIEHATSVLSQVSNLGRTHFYSRTERFGGSSLVGDKLYVCLNETRMKTALNNI
FT IVALQTVNGEGRARRLGPREASANTGGEDSALNVAHQLAEVDDLLTDESFLREAVFTQD
FT KYELVNGLRWAGAXQLTAQAFWFDVNAAIDEIDNRLLAAAALRLLPGQANHVDGLVSIN
FT YAQLDRALSVVGGNILPQTLEITRDERKRQLPEVRVIDGERVTIRNKDEATVIRNHGQG
FT LPWLLAFLLLLLSVVVVYSTIYLNDWLYRLSVVRHGKPGGGAARKLSGMSDWLCSRLRA
FT RGALNVSRMRKKQACDPSPTGLRKFLTCYNFSYELWDPTGSYDDAQRRIIAEQNSFVEA
FT VRAIDEGDRELAEACLTNVRRILRRHLNYRPDYFDIIEAKAVYLVTVLTNAMSGPVVGV
FT DDDERRAVVAAFNPSDCGLPNLDSCSLDEIKNFDLSEVAIGEGTNVEQARGYLNLCRNI
FT QCMIETIGTVQFLGVLSSYTGPQYPCISQAFAEDKRIRKERLKDKDNITTADIIAYLVS
FT GVMAAYALVAVSKGGITLFKFMKNYAGGGGDGPGSSRRIRQLEAALPSVPQPEELTMME
FT RLRRLQSSDNDLVLRRNPSDMLSQVVRDVVADVDSSDIAEFLNDPARMTEAALELRLTR
FT IMSAEGSPVDVIEPGGQELISMQVHGESLTVINAGTDSPTVIRSASLSTRHRSSGIEIG
FT SFAVDKVLPYEVEGENDDHGDAGKKPTVAQALMIGGGAVKGQGNLGVTNGKEFLKVLGS
FT SRSIGKMSGKMAV"
FT CDS 314. .844
FT /codon_start=1
FT /transl_table=1
FT /gene="cp"
FT /product="coat protein"
FT /protein_id="BAM95901.1"
FT /translation="MAENRGERRAAVENRYDSWDHEQAMKAAVRKFISYDQFSAQLRNW
FT REARLNIIEHATSVLSQVSNLGRTHFYSRTERFGGSSLVGDKLYVCLNETRMKTALNNI
FT IVALQTVNGEGRARRLGPREASANTGGEDSALNVAHQLAEVDDLLTDESFLREAVFTQD
FT KYELVNGLRWAGA"
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SQ Sequence 3133 BP; 834 A; 573 C; 875 G; 851 T; 0 other;
ab491171 Length: 3133 11-MAR-2013 Type: N Check: 99 ..
1 gtatttttta agtctaaaca gtttgtgact aactagacga aaaacatatc
51 aactttcttg cagagctttt agtaatacga ccaggtgttg gttgctatta
101 agagctgcat taaagtgttt tcttgtgtct tttgcgggtg ggctacaggc
151 gagcagtccg tataaaggca tctgaaagcg acggcgatca caaaggcgcg
201 agtggaaatt cttttgtgtt agcggtttga aaattttatt ttcttactgt
251 gtttgttgtt ctataattct cggagatctg gaatcagagg aggtttgttt
301 accacccttg gaaatggctg aaaacagagg tgagcgaaga gcagccgtcg
351 agaatagata tgactcttgg gaccatgagc aggccatgaa ggctgccgtg
401 aggaagttta tttcttacga tcaattctca gctcagttaa gaaactggcg
451 cgaagctagg ttaaacataa ttgaacatgc cactagcgtg ttgagccagg
501 tgtctaattt aggtagaact catttctaca gtagaaccga acgctttggt
551 ggaagttcac ttgttggtga taaattgtac gtatgtctga atgaaaccag
601 aatgaaaacc gcgttgaata atataattgt agcgttgcag acagtgaacg
651 gcgaagggcg ggcaagacga ttaggtccga gagaagcttc cgcgaacacc
701 ggcggggagg atagcgctct gaatgtggca catcaactcg cagaggtgga
751 cgatttatta actgatgaaa gttttttaag agaagctgtt tttactcagg
801 acaaatatga gctcgtgaac gggttacgct gggctggtgc atagcaatta
851 accgctcagg ctttttggtt tgacgtcaac gccgctatcg acgaaattga
901 taatcgactg ctggcggcgg ctgcgttaag actattgcct gggcaggcaa
951 atcacgtgga tggtttagtg tctataaatt acgcacaatt ggatagagca
1001 ttgagtgttg ttggtgggaa tattttacct cagacgttgg agataactcg
1051 tgacgaaaga aaaaggcaat tacctgaggt cagagttatc gacggcgagc
1101 gtgtcactat tcgtaacaag gatgaggcga cggtcattag gaatcatggt
1151 cagggacttc cttggctatt agcgttttta ctgttgctgt tatctgttgt
1201 agtggtgtat tctacaatat acctgaacga ctggttgtat cggttaagtg
1251 tggtaaggca tgggaaacct ggcggtggtg cagctcgtaa gctgtcgggt
1301 atgtcggact ggttgtgcag tcgcttaagg gccagaggcg ctttgaatgt
1351 gagtaggatg aggaagaaac aagcatgcga tccgtcgccc actgggttgc
1401 ggaagttcct tacttgttat aacttttctt atgaactttg ggatcctact
1451 ggtagttatg acgatgcgca gcggagaatt atagcggaac agaattcgtt
1501 tgtggaagcc gtgagggcca tagatgaagg tgacagggag ttggctgagg
1551 cgtgtttgac taatgttaga cggatcctca ggagacatct taattaccga
1601 cctgattatt ttgatattat tgaagcgaag gcggtatatt tggtgacagt
1651 gctgacaaac gcaatgtcgg ggccagttgt tggcgttgac gatgacgagc
1701 ggagagcggt ggtagccgcg tttaatccgt cagactgtgg gttaccgaat
1751 ttggatagtt gctctttgga cgaaattaag aattttgatt tgtccgaagt
1801 ggcgatcggt gagggtacca atgttgaaca agcaagaggg tatcttaatc
1851 tttgtagaaa tattcagtgt atgattgaga caattggcac cgtccaattt
1901 cttggtgtgt tgtcgtcgta tacaggtcct cagtatcctt gtatatccca
1951 agcttttgct gaagataaga ggataagaaa agaaaggctg aaagataagg
2001 acaatataac gacagcagat attattgcct atttggtgag tggggtgatg
2051 gcagcctacg ctcttgtggc ggtaagtaaa ggagggatca cactgtttaa
2101 gtttatgaag aactatgcgg gtggaggtgg tgacgggcct ggttcaagca
2151 gaagaataag acagttagag gccgctttgc cctccgttcc gcagccagaa
2201 gaactgacca tgatggaacg tttgagaaga cttcaatctt ccgataacga
2251 tttagttttg agaaggaacc cgtccgatat gcttagtcag gtcgtacgtg
2301 acgttgtagc cgatgtagac tccagcgata ttgctgagtt tttgaatgat
2351 cctgctagga tgaccgaagc ggctctggag ctccgattga ccagaataat
2401 gagtgctgaa ggttcaccgg tggatgtaat tgagccaggg ggccaggaac
2451 ttatttccat gcaagtgcat ggagaaagtc taaccgtcat aaatgccggc
2501 accgactctc ccacagtgat cagatccgcg tccttgtcga cgcggcaccg
2551 tagttctggt atagaaatcg gttcttttgc agtggataaa gtgctgcctt
2601 acgaggtgga aggcgaaaac gacgatcacg gtgacgccgg taagaagccc
2651 actgtcgccc aagctttgat gattgggggt ggtgcggtta agggacaggg
2701 taatctgggt gttactaatg gcaaagaatt cttgaaggta ttaggtagct
2751 ctcgatctat agggaagatg tcaggtaaga tggctgttta aaccgagtgc
2801 gtgtgacggg tttacctctc taaaagtcac accgtggata ctacgacaag
2851 tatcagtgct tacaggactt atgtctgtgg ttcacttaaa tcgaaccatt
2901 ggagcaatcc aacgttaata ctacgttaag tattagtgct tacagggcta
2951 aaccgtggat cactttaatc gaaccagtct cgaaagggac aaaactgact
3001 tcctagctgt ttttgagata attccaaaaa actcattatc cggcttaggg
3051 aagagcggcc agttgctgct gcgatcaaga cacgatcgtt caaaagggtg
3101 caactccccc ccccttggag ggtatccaag acc