Sequence of DPV Potato mop-top virus

Potato mop-top virus crp gene for cysteine-rich protein, partial cds, isolate: Hiroshima (H).

ACC No: AB491173

Dated: 2013-03-11 | Length: 461 | CRC: -1856399778

                
ID   AB491173; SV 1; linear; genomic RNA; STD; VRL; 461 BP.
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AC   AB491173;
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DT   11-MAR-2013 (Rel. 116, Created)
DT   11-MAR-2013 (Rel. 116, Last updated, Version 1)
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DE   Potato mop-top virus crp gene for cysteine-rich protein, partial cds,
DE   isolate: Hiroshima (H).
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KW   .
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OS   Potato mop-top virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC   Pomovirus.
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RN   [1]
RP   1-461
RA   Hataya T.;
RT   ;
RL   Submitted (16-MAR-2009) to the INSDC.
RL   Contact:Tatsuji Hataya Hokkaido University, Research Faculty of
RL   Agriculture; Kita-ku, Kita 9, Nishi 9, Sapporo, Hokkaido 060-8589, Japan
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RN   [2]
RA   Hataya T., Nakayama T., Maoka T.;
RT   "Molecular detection and characterization of Japanese Potato mop-top virus
RT   isolates in potato tubers and soil by reverse transcription-polymerase
RT   chain reaction followed by microplate hybridization";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .461
FT                   /organism="Potato mop-top virus"
FT                   /segment="RNA 3"
FT                   /host="Solanum tuberosum"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /isolate="Hiroshima (H)"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Hiroshima"
FT                   /collection_date="1980"
FT                   /PCR_primers="fwd_name: PMTV-9P, fwd_seq:
FT                   gcttgatccagaagtcattaagg, rev_name: PMTV-9M, rev_seq:
FT                   cctggaagcaccaatacttaacg"
FT                   /db_xref="taxon:37128"
FT   CDS             <170. .376
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="crp"
FT                   /product="cysteine-rich protein"
FT                   /note="a possible GUG initiation"
FT                   /protein_id="BAM95903.1"
FT                   /translation="VERRFIVYYNCSDCACGCYVSSLLTVFGACVNICVCIVFFILVYL
FT                   SGCYNMRVLGFIRVCIYLYKLCR"
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SQ   Sequence 461 BP; 120 A; 69 C; 105 G; 167 T; 0 other;

ab491173 Length: 461  11-MAR-2013  Type: N  Check: 8325  ..

       1  ctatacacag ctttcaggaa tttccttatg ggaatattcc ttcgataaga
      51  cgtgaggctg aatttgatgt tcaaaatgat gagtctagtg cggtggcttt
     101  gtccggttct aataataata gaaggcaagt agtaagtacg ccctgtgaaa
     151  ataatatgtt acttaagttg tggaaagacg atttatcgtt tactataatt
     201  gcagtgactg tgcttgtggg tgctatgtta gctcgttatt aacagtgttc
     251  ggtgcttgtg tgaatatatg tgtttgtatt gtatttttca ttctcgtgta
     301  tttgtccggt tgttataata tgagggtcct aggttttata cgggtatgca
     351  tatacctata caaattatgc cgttgacact acgttaagtg ttagtgctta
     401  caggacttcg gtccgtggtt cacttaaatc gaaccattgg agtaatccaa
     451  cgttaatact a