Sequence of DPV Rosellinia necatrix victorivirus 1

Rosellinia necatrix victorivirus 1 CP gene for coat protein, partial cds.

ACC No: AB698489

Dated: 2012-12-20 | Length: 1789 | CRC: 29101707

                
ID   AB698489; SV 1; linear; genomic RNA; STD; VRL; 1789 BP.
XX
AC   AB698489;
XX
DT   17-AUG-2012 (Rel. 113, Created)
DT   20-DEC-2012 (Rel. 115, Last updated, Version 2)
XX
DE   Rosellinia necatrix victorivirus 1 CP gene for coat protein, partial cds.
XX
KW   .
XX
OS   Rosellinia necatrix victorivirus 1
OC   Viruses; dsRNA viruses; Totiviridae; Victorivirus;
OC   unclassified Victorivirus.
XX
RN   [1]
RP   1-1789
RA   Yaegashi H., Kanematsu S.;
RT   ;
RL   Submitted (13-FEB-2012) to the INSDC.
RL   Contact:Hajime Yaegashi NARO, National Institute of Fruit Tree Science,
RL   Apple Research Station; Shimokuriyagawa, Nabeyasiki 92-24, Morioka, Iwate
RL   0200123, Japan
XX
RN   [2]
RC   DOI:10.1111/j.1574-6941.2012.01454.x
RA   Yaegashi H., Nakamura H., Sawahata T., Sasaki A., Iwanami Y., Ito T.,
RA   Kanematsu S.;
RT   "Appearance of mycovirus-like double-stranded RNAs in the white root rot
RT   fungus, Rosellinia necatrix, in an apple orchard";
RL   FEMS Microbiol. Ecol. 83:49-62(2013).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1789
FT                   /organism="Rosellinia necatrix victorivirus 1"
FT                   /host="Rosellinia necatrix W1028"
FT                   /strain="1-W1028/S1"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Nagano, Suzaka, Nagano Fruit Tree
FT                   Experiment Station"
FT                   /collection_date="Jun-2009"
FT                   /db_xref="taxon:1148491"
FT   CDS             355. .>1789
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:J7M2A4"
FT                   /db_xref="InterPro:IPR008871"
FT                   /db_xref="UniProtKB/TrEMBL:J7M2A4"
FT                   /protein_id="BAM36399.1"
FT                   /translation="MAATARNNFLASVVANARGQPITAAGHRRFRSVVRTSATIGGVND
FT                   SRAASIFYEIGRGVNSSESALAVPTDATMRVEAAYPTNAVLAEDFVGLAKKYSNFSSTF
FT                   EYSSLAGVAERLARALAARSIWDDFDSTAITGGRTVVVHALGTYDGPVNSMTDTVFIPR
FT                   LTNTNVRGDVFAVLVAAVTGEGSAVATDVLEVDAVTRQAVVPVVDGVALPLALVDALRI
FT                   IGANMIASDQGPLFALAVTRGIHRILSVVGHTDEGGTTRDLLRCAAFSPPFGGVSSRLS
FT                   DYAGLPALSTNGVSVVASYVDSIALVTAALVAHSDPGDHYQGEWFPTFFLGATPTDGDA
FT                   RPGQHTAGTAAMAGAIRAQLLNDQERFWQNYCRGTTRDLLRCAAFSPPFGGVSSRLSDY
FT                   AGLPALSTNGVSVVASYVDSIALVTAALVAHSDPGDHYQGEWFPTFFLGATPTDGDARP
FT                   GQHTAGTAAMAGAIRAQLLN"
XX
SQ   Sequence 1789 BP; 285 A; 628 C; 508 G; 368 T; 0 other;

ab698489 Length: 1789  20-DEC-2012  Type: N  Check: 2409  ..

       1  caaccaccaa tcgggctagg atcacgaaga accagggctg ccccccgcaa
      51  ctgcgcggcg ggtttccgcg aacgtttatc tgttggtatt ctagtgtgga
     101  ccggttaggc gccggtaaac aatttccatc acacttgatt ccttgtcggg
     151  aatctagatc gccgccccac cgtatggtgg atcccgggtc gaaggtgagg
     201  tgtattttgt ggtaggggag ggtggtcacc tgttggtggc tccgttgatc
     251  ctaccctgag tacgctccga cggaaattgc ttacattcga caaaatcgcc
     301  tgcaaccgaa acttcccaca ccgaaccaac caaggccagt ctccgccact
     351  tgccatggcc gccactgccc gcaacaactt tctcgcctcg gtggtcgcca
     401  atgcgcgcgg ccagccgatc accgccgccg gccaccgccg ctttcgttct
     451  gtcgtccgca cctccgccac cattgggggg gtgaacgaca gccgtgctgc
     501  ctctatcttt tacgagatcg ggcgcggtgt caactcctcg gagagcgccc
     551  tggccgtgcc caccgacgcc accatgcgcg tcgaagcggc ctacccgacc
     601  aacgccgtcc tcgccgagga cttcgttggt ctggcgaaga agtactcgaa
     651  tttctcaagc accttcgagt actcttcgct cgccggcgtc gctgagcggt
     701  tggcccgtgc cctcgccgcc cgctcgatct gggacgactt cgactcgacc
     751  gccatcacag gtggccgcac agttgtcgtc cacgccctcg ggacctacga
     801  cgggcccgtc aactccatga ccgacacggt cttcatcccg cgcctcacta
     851  acaccaacgt gcgcggtgac gtttttgccg tcctggtcgc cgctgtcact
     901  ggtgagggga gcgcagtcgc cactgacgtg ctcgaagtcg acgccgtcac
     951  gcgtcaggct gtcgtgcccg tcgttgacgg cgtagccctc ccccttgcgc
    1001  tagtcgacgc gctgcgcatc atcggggcta acatgatcgc ttcggaccag
    1051  gggccgctct tcgccctggc cgtcacgcgc gggatacacc gtatcctgag
    1101  cgtcgtcggc catacggacg agggcggcac tacccgggac ttgctccgct
    1151  gtgcggcttt ttcgcctcct ttcggaggag tgagtagccg actttccgac
    1201  tatgctggcc tccccgccct ctccaccaat ggtgtttcgg tcgtcgcttc
    1251  ttacgtcgac tcgatcgccc ttgttacagc ggcgctcgtt gcgcacagtg
    1301  acccgggcga ccactaccaa ggtgagtggt tccccacttt cttcctcggt
    1351  gccacgccca ccgacggaga cgcccggccc ggacaacaca ccgccgggac
    1401  agctgccatg gcgggcgcga ttcgcgccca gctgttgaac gatcaggagc
    1451  gtttttggca gaactactgt cgcggcacta cccgggactt gctccgctgt
    1501  gcggcttttt cgcctccttt cggaggagtg agtagccgac tttccgacta
    1551  tgctggcctc cccgccctct ccaccaatgg tgtttcggtc gtcgcttctt
    1601  acgtcgactc gatcgccctt gttacagcgg cgctcgttgc gcacagtgac
    1651  ccgggcgacc actaccaagg tgagtggttc cccactttct tcctcggtgc
    1701  cacgcccacc gacggagacg cccggcccgg acaacacacc gccgggacag
    1751  ctgccatggc gggcgcgatt cgcgcccagc tgttgaacg