Sequence of DPV Rosellinia necatrix victorivirus 1

Rosellinia necatrix victorivirus 1 RdRp gene for RNA-dependent RNA polymerase, partial cds.

ACC No: AB698490

Dated: 2012-12-20 | Length: 2113 | CRC: 1888231236

                
ID   AB698490; SV 1; linear; genomic RNA; STD; VRL; 2113 BP.
XX
AC   AB698490;
XX
DT   17-AUG-2012 (Rel. 113, Created)
DT   20-DEC-2012 (Rel. 115, Last updated, Version 2)
XX
DE   Rosellinia necatrix victorivirus 1 RdRp gene for RNA-dependent RNA
DE   polymerase, partial cds.
XX
KW   .
XX
OS   Rosellinia necatrix victorivirus 1
OC   Viruses; dsRNA viruses; Totiviridae; Victorivirus;
OC   unclassified Victorivirus.
XX
RN   [1]
RP   1-2113
RA   Yaegashi H., Kanematsu S.;
RT   ;
RL   Submitted (13-FEB-2012) to the INSDC.
RL   Contact:Hajime Yaegashi NARO, National Institute of Fruit Tree Science,
RL   Apple Research Station; Shimokuriyagawa, Nabeyasiki 92-24, Morioka, Iwate
RL   0200123, Japan
XX
RN   [2]
RC   DOI:10.1111/j.1574-6941.2012.01454.x
RA   Yaegashi H., Nakamura H., Sawahata T., Sasaki A., Iwanami Y., Ito T.,
RA   Kanematsu S.;
RT   "Appearance of mycovirus-like double-stranded RNAs in the white root rot
RT   fungus, Rosellinia necatrix, in an apple orchard";
RL   FEMS Microbiol. Ecol. 83:49-62(2013).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2113
FT                   /organism="Rosellinia necatrix victorivirus 1"
FT                   /host="Rosellinia necatrix W1028"
FT                   /strain="1-W1028/S1"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Nagano, Suzaka, Nagano Fruit Tree
FT                   Experiment Station"
FT                   /collection_date="Jun-2009"
FT                   /db_xref="taxon:1148491"
FT   CDS             <1. .2084
FT                   /codon_start=3
FT                   /transl_table=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:J7MDC8"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:J7MDC8"
FT                   /protein_id="BAM36400.1"
FT                   /translation="LLHLRGLLQGLRTTQGTGAAALMVARAAGRLTEDQVISLILYRTA
FT                   LAPLFGQRSYDYAWWAITEPGNTAGLSNALKALGLNATACGAALVEAKALQGRGIAPVD
FT                   MAGEVAFRVQPDLVKAKVLEPDYDELREHIKHVLHSELAGELELTPLAEFWSSRWLWCV
FT                   NGSNTSTSDRAMGLDPHEYADTHTRTYRRMVAETLEQEPISTWDGTTSVSASVKLETAK
FT                   SRAIFACDTRSYFAFSWILNDVQKRWGNNRVLLDPGKGGMAGIDRRIRRSQHTGGVNVM
FT                   LDYDDFNSHHSTRSMQILFEELCDMYSAPSWYRDTLVNSFERMFINFEGKQHHVLGTLM
FT                   SGHRGTTFINSVLNAVYIRAAIGGPTFDSLVSLHTGDDVYLRAPTLSDCSRILTAAKDY
FT                   GCRMNPTKQSIGFRRAEFLRMGIGERASYGYLARSVAALACGNWFNPNPMTPWEGFNSL
FT                   VTSARSIINRAGGQLRLGELLSPAVRHGKSISYRTRAQLIDGECAIEGAPVYGSDFRLK
FT                   TFEVKLPKADAVPISPRWRTNATRDYLLDHVSPIEAEALSLAGADITTMMVVASFGKGL
FT                   DRKVLQSTPDFVLRRKPVRAALGFTDVVTLLTSIPRVGCLSGYPLLNLVAGRLSNDELR
FT                   HLVLLAGGDANAADLQVEAFGAESLTRNIIGTLPFSDAVNLGKRTNSANVYVLTSIYM"
XX
SQ   Sequence 2113 BP; 447 A; 631 C; 579 G; 456 T; 0 other;

ab698490 Length: 2113  20-DEC-2012  Type: N  Check: 5710  ..

       1  cgctcctgca cctgcgtggc ctcctccaag gcctgcgcac cactcagggc
      51  accggcgcag ccgccttgat ggtggcacgt gcagctggga gattgaccga
     101  ggaccaggtc atctccctca tcttatatcg gacggcgttg gcgcccctct
     151  tcggccaacg ctcgtatgac tatgcctggt gggcgatcac cgagccaggc
     201  aacacggcgg gcctgagtaa cgcactcaag gccctgggtt tgaacgcgac
     251  cgcgtgtggc gcagctttgg ttgaggcaaa agcgctgcag ggacgtggca
     301  ttgcccctgt cgacatggcg ggggaagtgg cttttcgcgt tcagcccgac
     351  cttgtcaagg cgaaggtcct cgagcccgac tacgacgagt tgcgtgagca
     401  cattaaacac gtgcttcaca gtgagctcgc cggcgagctg gagttgacgc
     451  ccctcgctga attttggtcc tcccggtggt tgtggtgcgt caacggttca
     501  aacacgagca cctccgaccg ggccatgggc ctcgaccctc acgagtacgc
     551  agacacacac acgcgtactt accgtcgcat ggttgcggag acgctcgaac
     601  aggagccgat cagcacttgg gatggtacga cgtccgtctc ggcgtcagtg
     651  aaactcgaga cagccaagag tcgcgcaatc ttcgcatgcg acacccgctc
     701  ttatttcgct ttttcttgga ttctaaatga cgtccaaaag cgctggggca
     751  acaaccgagt gttgctcgat ccgggcaaag gcggcatggc aggcatagac
     801  cgccgcataa gacgctccca acacactggg ggtgtcaatg tcatgttgga
     851  ctacgatgac ttcaacagtc accactcgac gcggtctatg caaattcttt
     901  tcgaggagct gtgcgacatg tactcggcgc cgagctggta cagggacaca
     951  ctggttaatt cattcgagcg catgtttatt aattttgagg ggaagcaaca
    1001  ccacgtcctg gggaccctca tgtctggcca ccggggcacc actttcatta
    1051  attccgtttt aaacgcggtc tacattaggg cggccatcgg cggccccact
    1101  ttcgactcgc tagttagttt gcacaccggc gacgatgttt acctccgcgc
    1151  ccccacactc tctgattgtt ctaggatcct tactgcggcc aaggactacg
    1201  gctgtcggat gaacccaacc aagcaaagta taggtttcag acgtgcagag
    1251  ttcctacgca tggggatcgg tgaacgggcc tcttacggct acctcgctcg
    1301  ctctgtggcc gccttagcat gcggcaactg gttcaacccc aacccgatga
    1351  caccgtggga gggttttaat tcactcgtta cttctgcccg cagcataatt
    1401  aaccgcgcgg gcggacaact ccggttaggc gaattgctta gtccggctgt
    1451  acgccacggg aaatcaatat catacaggac ccgtgctcaa ctaattgacg
    1501  gtgagtgtgc cattgaaggc gcaccggtct acggttccga cttccgactc
    1551  aagacttttg aggtcaagtt accgaaggct gacgccgttc cgatctcccc
    1601  acggtggcgc acgaacgcca ctcgtgatta cctcttggac cacgtgagtc
    1651  cgattgaggc agaagcactg tcgctcgccg gggcggatat aactactatg
    1701  atggtcgtcg caagttttgg aaaaggacta gaccggaaag ttttacaatc
    1751  cacccccgac tttgtgctcc gccgaaaacc ggtccgcgca gctttagggt
    1801  tcaccgatgt ggttacgctc ctgacgtcga ttccccgcgt cgggtgccta
    1851  tcgggatatc ctctgctcaa cctggttgcc ggtcgtctta gcaacgacga
    1901  actccggcac ctggtccttc tagccggcgg cgatgccaac gccgccgacc
    1951  tacaagttga ggctttcgga gcggaaagcc taacgaggaa cataattggc
    2001  actcttcctt tctcagacgc cgttaacctg ggaaagcgta caaactccgc
    2051  gaacgtctac gtactcacat ccatttacat gtagacacaa taatcgcgca
    2101  ggtcaacaac gac