Sequence of DPV Rosellinia necatrix victorivirus 1
Rosellinia necatrix victorivirus 1 RdRp gene for RNA-dependent RNA polymerase, partial cds.
ACC No: AB698490
Dated: 2012-12-20 | Length: 2113 | CRC: 1888231236
ID AB698490; SV 1; linear; genomic RNA; STD; VRL; 2113 BP.
XX
AC AB698490;
XX
DT 17-AUG-2012 (Rel. 113, Created)
DT 20-DEC-2012 (Rel. 115, Last updated, Version 2)
XX
DE Rosellinia necatrix victorivirus 1 RdRp gene for RNA-dependent RNA
DE polymerase, partial cds.
XX
KW .
XX
OS Rosellinia necatrix victorivirus 1
OC Viruses; dsRNA viruses; Totiviridae; Victorivirus;
OC unclassified Victorivirus.
XX
RN [1]
RP 1-2113
RA Yaegashi H., Kanematsu S.;
RT ;
RL Submitted (13-FEB-2012) to the INSDC.
RL Contact:Hajime Yaegashi NARO, National Institute of Fruit Tree Science,
RL Apple Research Station; Shimokuriyagawa, Nabeyasiki 92-24, Morioka, Iwate
RL 0200123, Japan
XX
RN [2]
RC DOI:10.1111/j.1574-6941.2012.01454.x
RA Yaegashi H., Nakamura H., Sawahata T., Sasaki A., Iwanami Y., Ito T.,
RA Kanematsu S.;
RT "Appearance of mycovirus-like double-stranded RNAs in the white root rot
RT fungus, Rosellinia necatrix, in an apple orchard";
RL FEMS Microbiol. Ecol. 83:49-62(2013).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2113
FT /organism="Rosellinia necatrix victorivirus 1"
FT /host="Rosellinia necatrix W1028"
FT /strain="1-W1028/S1"
FT /mol_type="genomic RNA"
FT /country="Japan:Nagano, Suzaka, Nagano Fruit Tree
FT Experiment Station"
FT /collection_date="Jun-2009"
FT /db_xref="taxon:1148491"
FT CDS <1. .2084
FT /codon_start=3
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:J7MDC8"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="UniProtKB/TrEMBL:J7MDC8"
FT /protein_id="BAM36400.1"
FT /translation="LLHLRGLLQGLRTTQGTGAAALMVARAAGRLTEDQVISLILYRTA
FT LAPLFGQRSYDYAWWAITEPGNTAGLSNALKALGLNATACGAALVEAKALQGRGIAPVD
FT MAGEVAFRVQPDLVKAKVLEPDYDELREHIKHVLHSELAGELELTPLAEFWSSRWLWCV
FT NGSNTSTSDRAMGLDPHEYADTHTRTYRRMVAETLEQEPISTWDGTTSVSASVKLETAK
FT SRAIFACDTRSYFAFSWILNDVQKRWGNNRVLLDPGKGGMAGIDRRIRRSQHTGGVNVM
FT LDYDDFNSHHSTRSMQILFEELCDMYSAPSWYRDTLVNSFERMFINFEGKQHHVLGTLM
FT SGHRGTTFINSVLNAVYIRAAIGGPTFDSLVSLHTGDDVYLRAPTLSDCSRILTAAKDY
FT GCRMNPTKQSIGFRRAEFLRMGIGERASYGYLARSVAALACGNWFNPNPMTPWEGFNSL
FT VTSARSIINRAGGQLRLGELLSPAVRHGKSISYRTRAQLIDGECAIEGAPVYGSDFRLK
FT TFEVKLPKADAVPISPRWRTNATRDYLLDHVSPIEAEALSLAGADITTMMVVASFGKGL
FT DRKVLQSTPDFVLRRKPVRAALGFTDVVTLLTSIPRVGCLSGYPLLNLVAGRLSNDELR
FT HLVLLAGGDANAADLQVEAFGAESLTRNIIGTLPFSDAVNLGKRTNSANVYVLTSIYM"
XX
SQ Sequence 2113 BP; 447 A; 631 C; 579 G; 456 T; 0 other;
ab698490 Length: 2113 20-DEC-2012 Type: N Check: 5710 ..
1 cgctcctgca cctgcgtggc ctcctccaag gcctgcgcac cactcagggc
51 accggcgcag ccgccttgat ggtggcacgt gcagctggga gattgaccga
101 ggaccaggtc atctccctca tcttatatcg gacggcgttg gcgcccctct
151 tcggccaacg ctcgtatgac tatgcctggt gggcgatcac cgagccaggc
201 aacacggcgg gcctgagtaa cgcactcaag gccctgggtt tgaacgcgac
251 cgcgtgtggc gcagctttgg ttgaggcaaa agcgctgcag ggacgtggca
301 ttgcccctgt cgacatggcg ggggaagtgg cttttcgcgt tcagcccgac
351 cttgtcaagg cgaaggtcct cgagcccgac tacgacgagt tgcgtgagca
401 cattaaacac gtgcttcaca gtgagctcgc cggcgagctg gagttgacgc
451 ccctcgctga attttggtcc tcccggtggt tgtggtgcgt caacggttca
501 aacacgagca cctccgaccg ggccatgggc ctcgaccctc acgagtacgc
551 agacacacac acgcgtactt accgtcgcat ggttgcggag acgctcgaac
601 aggagccgat cagcacttgg gatggtacga cgtccgtctc ggcgtcagtg
651 aaactcgaga cagccaagag tcgcgcaatc ttcgcatgcg acacccgctc
701 ttatttcgct ttttcttgga ttctaaatga cgtccaaaag cgctggggca
751 acaaccgagt gttgctcgat ccgggcaaag gcggcatggc aggcatagac
801 cgccgcataa gacgctccca acacactggg ggtgtcaatg tcatgttgga
851 ctacgatgac ttcaacagtc accactcgac gcggtctatg caaattcttt
901 tcgaggagct gtgcgacatg tactcggcgc cgagctggta cagggacaca
951 ctggttaatt cattcgagcg catgtttatt aattttgagg ggaagcaaca
1001 ccacgtcctg gggaccctca tgtctggcca ccggggcacc actttcatta
1051 attccgtttt aaacgcggtc tacattaggg cggccatcgg cggccccact
1101 ttcgactcgc tagttagttt gcacaccggc gacgatgttt acctccgcgc
1151 ccccacactc tctgattgtt ctaggatcct tactgcggcc aaggactacg
1201 gctgtcggat gaacccaacc aagcaaagta taggtttcag acgtgcagag
1251 ttcctacgca tggggatcgg tgaacgggcc tcttacggct acctcgctcg
1301 ctctgtggcc gccttagcat gcggcaactg gttcaacccc aacccgatga
1351 caccgtggga gggttttaat tcactcgtta cttctgcccg cagcataatt
1401 aaccgcgcgg gcggacaact ccggttaggc gaattgctta gtccggctgt
1451 acgccacggg aaatcaatat catacaggac ccgtgctcaa ctaattgacg
1501 gtgagtgtgc cattgaaggc gcaccggtct acggttccga cttccgactc
1551 aagacttttg aggtcaagtt accgaaggct gacgccgttc cgatctcccc
1601 acggtggcgc acgaacgcca ctcgtgatta cctcttggac cacgtgagtc
1651 cgattgaggc agaagcactg tcgctcgccg gggcggatat aactactatg
1701 atggtcgtcg caagttttgg aaaaggacta gaccggaaag ttttacaatc
1751 cacccccgac tttgtgctcc gccgaaaacc ggtccgcgca gctttagggt
1801 tcaccgatgt ggttacgctc ctgacgtcga ttccccgcgt cgggtgccta
1851 tcgggatatc ctctgctcaa cctggttgcc ggtcgtctta gcaacgacga
1901 actccggcac ctggtccttc tagccggcgg cgatgccaac gccgccgacc
1951 tacaagttga ggctttcgga gcggaaagcc taacgaggaa cataattggc
2001 actcttcctt tctcagacgc cgttaacctg ggaaagcgta caaactccgc
2051 gaacgtctac gtactcacat ccatttacat gtagacacaa taatcgcgca
2101 ggtcaacaac gac