Sequence of DPV Rosellinia necatrix victorivirus 1
Rosellinia necatrix victorivirus 1 RdRp gene for RNA-dependent RNA polymerase, partial cds.
ACC No: AB698490
Dated: 2012-12-20 | Length: 2113 | CRC: 1888231236
ID AB698490; SV 1; linear; genomic RNA; STD; VRL; 2113 BP. XX AC AB698490; XX DT 17-AUG-2012 (Rel. 113, Created) DT 20-DEC-2012 (Rel. 115, Last updated, Version 2) XX DE Rosellinia necatrix victorivirus 1 RdRp gene for RNA-dependent RNA DE polymerase, partial cds. XX KW . XX OS Rosellinia necatrix victorivirus 1 OC Viruses; dsRNA viruses; Totiviridae; Victorivirus; OC unclassified Victorivirus. XX RN [1] RP 1-2113 RA Yaegashi H., Kanematsu S.; RT ; RL Submitted (13-FEB-2012) to the INSDC. RL Contact:Hajime Yaegashi NARO, National Institute of Fruit Tree Science, RL Apple Research Station; Shimokuriyagawa, Nabeyasiki 92-24, Morioka, Iwate RL 0200123, Japan XX RN [2] RC DOI:10.1111/j.1574-6941.2012.01454.x RA Yaegashi H., Nakamura H., Sawahata T., Sasaki A., Iwanami Y., Ito T., RA Kanematsu S.; RT "Appearance of mycovirus-like double-stranded RNAs in the white root rot RT fungus, Rosellinia necatrix, in an apple orchard"; RL FEMS Microbiol. Ecol. 83:49-62(2013). XX FH Key Location/Qualifiers FH FT source 1. .2113 FT /organism="Rosellinia necatrix victorivirus 1" FT /host="Rosellinia necatrix W1028" FT /strain="1-W1028/S1" FT /mol_type="genomic RNA" FT /country="Japan:Nagano, Suzaka, Nagano Fruit Tree FT Experiment Station" FT /collection_date="Jun-2009" FT /db_xref="taxon:1148491" FT CDS <1. .2084 FT /codon_start=3 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:J7MDC8" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:J7MDC8" FT /protein_id="BAM36400.1" FT /translation="LLHLRGLLQGLRTTQGTGAAALMVARAAGRLTEDQVISLILYRTA FT LAPLFGQRSYDYAWWAITEPGNTAGLSNALKALGLNATACGAALVEAKALQGRGIAPVD FT MAGEVAFRVQPDLVKAKVLEPDYDELREHIKHVLHSELAGELELTPLAEFWSSRWLWCV FT NGSNTSTSDRAMGLDPHEYADTHTRTYRRMVAETLEQEPISTWDGTTSVSASVKLETAK FT SRAIFACDTRSYFAFSWILNDVQKRWGNNRVLLDPGKGGMAGIDRRIRRSQHTGGVNVM FT LDYDDFNSHHSTRSMQILFEELCDMYSAPSWYRDTLVNSFERMFINFEGKQHHVLGTLM FT SGHRGTTFINSVLNAVYIRAAIGGPTFDSLVSLHTGDDVYLRAPTLSDCSRILTAAKDY FT GCRMNPTKQSIGFRRAEFLRMGIGERASYGYLARSVAALACGNWFNPNPMTPWEGFNSL FT VTSARSIINRAGGQLRLGELLSPAVRHGKSISYRTRAQLIDGECAIEGAPVYGSDFRLK FT TFEVKLPKADAVPISPRWRTNATRDYLLDHVSPIEAEALSLAGADITTMMVVASFGKGL FT DRKVLQSTPDFVLRRKPVRAALGFTDVVTLLTSIPRVGCLSGYPLLNLVAGRLSNDELR FT HLVLLAGGDANAADLQVEAFGAESLTRNIIGTLPFSDAVNLGKRTNSANVYVLTSIYM" XX SQ Sequence 2113 BP; 447 A; 631 C; 579 G; 456 T; 0 other; ab698490 Length: 2113 20-DEC-2012 Type: N Check: 5710 .. 1 cgctcctgca cctgcgtggc ctcctccaag gcctgcgcac cactcagggc 51 accggcgcag ccgccttgat ggtggcacgt gcagctggga gattgaccga 101 ggaccaggtc atctccctca tcttatatcg gacggcgttg gcgcccctct 151 tcggccaacg ctcgtatgac tatgcctggt gggcgatcac cgagccaggc 201 aacacggcgg gcctgagtaa cgcactcaag gccctgggtt tgaacgcgac 251 cgcgtgtggc gcagctttgg ttgaggcaaa agcgctgcag ggacgtggca 301 ttgcccctgt cgacatggcg ggggaagtgg cttttcgcgt tcagcccgac 351 cttgtcaagg cgaaggtcct cgagcccgac tacgacgagt tgcgtgagca 401 cattaaacac gtgcttcaca gtgagctcgc cggcgagctg gagttgacgc 451 ccctcgctga attttggtcc tcccggtggt tgtggtgcgt caacggttca 501 aacacgagca cctccgaccg ggccatgggc ctcgaccctc acgagtacgc 551 agacacacac acgcgtactt accgtcgcat ggttgcggag acgctcgaac 601 aggagccgat cagcacttgg gatggtacga cgtccgtctc ggcgtcagtg 651 aaactcgaga cagccaagag tcgcgcaatc ttcgcatgcg acacccgctc 701 ttatttcgct ttttcttgga ttctaaatga cgtccaaaag cgctggggca 751 acaaccgagt gttgctcgat ccgggcaaag gcggcatggc aggcatagac 801 cgccgcataa gacgctccca acacactggg ggtgtcaatg tcatgttgga 851 ctacgatgac ttcaacagtc accactcgac gcggtctatg caaattcttt 901 tcgaggagct gtgcgacatg tactcggcgc cgagctggta cagggacaca 951 ctggttaatt cattcgagcg catgtttatt aattttgagg ggaagcaaca 1001 ccacgtcctg gggaccctca tgtctggcca ccggggcacc actttcatta 1051 attccgtttt aaacgcggtc tacattaggg cggccatcgg cggccccact 1101 ttcgactcgc tagttagttt gcacaccggc gacgatgttt acctccgcgc 1151 ccccacactc tctgattgtt ctaggatcct tactgcggcc aaggactacg 1201 gctgtcggat gaacccaacc aagcaaagta taggtttcag acgtgcagag 1251 ttcctacgca tggggatcgg tgaacgggcc tcttacggct acctcgctcg 1301 ctctgtggcc gccttagcat gcggcaactg gttcaacccc aacccgatga 1351 caccgtggga gggttttaat tcactcgtta cttctgcccg cagcataatt 1401 aaccgcgcgg gcggacaact ccggttaggc gaattgctta gtccggctgt 1451 acgccacggg aaatcaatat catacaggac ccgtgctcaa ctaattgacg 1501 gtgagtgtgc cattgaaggc gcaccggtct acggttccga cttccgactc 1551 aagacttttg aggtcaagtt accgaaggct gacgccgttc cgatctcccc 1601 acggtggcgc acgaacgcca ctcgtgatta cctcttggac cacgtgagtc 1651 cgattgaggc agaagcactg tcgctcgccg gggcggatat aactactatg 1701 atggtcgtcg caagttttgg aaaaggacta gaccggaaag ttttacaatc 1751 cacccccgac tttgtgctcc gccgaaaacc ggtccgcgca gctttagggt 1801 tcaccgatgt ggttacgctc ctgacgtcga ttccccgcgt cgggtgccta 1851 tcgggatatc ctctgctcaa cctggttgcc ggtcgtctta gcaacgacga 1901 actccggcac ctggtccttc tagccggcgg cgatgccaac gccgccgacc 1951 tacaagttga ggctttcgga gcggaaagcc taacgaggaa cataattggc 2001 actcttcctt tctcagacgc cgttaacctg ggaaagcgta caaactccgc 2051 gaacgtctac gtactcacat ccatttacat gtagacacaa taatcgcgca 2101 ggtcaacaac gac