Sequence of DPV Gentian Kobu-sho-associated virus

Gentian Kobu-sho-associated virus gene for hypothetical polyprotein, putative helicase domain, partial cds, isolate: As28.

ACC No: AB796347

Dated: 2013-03-15 | Length: 1667 | CRC: -1938168394

                
ID   AB796347; SV 1; linear; genomic RNA; STD; VRL; 1667 BP.
XX
AC   AB796347;
XX
DT   15-MAR-2013 (Rel. 116, Created)
DT   15-MAR-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Gentian Kobu-sho-associated virus gene for hypothetical polyprotein,
DE   putative helicase domain, partial cds, isolate: As28.
XX
KW   .
XX
OS   Gentian Kobu-sho-associated virus
OC   Viruses; unclassified viruses.
XX
RN   [1]
RP   1-1667
RA   Atsumi G., Sekine K.T.;
RT   ;
RL   Submitted (07-MAR-2013) to the INSDC.
RL   Contact:Go Atsumi Iwate biotechnology research center; 22-174-4 Narita,
RL   Kitakami, Iwate 024-0003, Japan URL    :http://www.ibrc.or.jp
XX
RN   [2]
RA   Atsumi G., Tomita R., Kobayashi K., Sekine K.T.;
RT   "Prevalence and genetic diversity of Gentian Kobu-sho-associated Virus in
RT   Japanese gentian";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1667
FT                   /organism="Gentian Kobu-sho-associated virus"
FT                   /host="Gentiana sp."
FT                   /isolate="As28"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Iwate, Hachimantai, Ashiro"
FT                   /isolation_source="Kobu-sho-affected stem"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1150353"
FT   CDS             <1. .>1667
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /product="hypothetical polyprotein"
FT                   /note="putative helicase domain"
FT                   /protein_id="BAM99888.1"
FT                   /translation="KTGESKMVDHFAFIDVSRDGQVIPVPFVDRTKGYSGLPILDEFGH
FT                   PVGIFGFLRTMRAKTENGVIDRPESARPSVQVGQFDITTKAVDVLQAVRGAGANGKWLR
FT                   LGAPTASGKSTRLVKEIGRIMYQKARRPIHIAVLEPRVFVVNNLWQGQSMMTNADAKDC
FT                   TFFNIVRKHGRLYENDKTQSHKDPSQAKVTITYMTYGSMVASLGKELRWDLVILDEFHS
FT                   RSDSDVLAVDAALQVLGHYNGVMAMTATFWPPDPTMNRFVDYSIGTAKKFRIERKVIKK
FT                   FDSVTEGEEGLYFKIRGPDGTFYALPRESCNAGGKTIVFLDSKNNCAKGMKELLATGPG
FT                   VNVMTLTSENRDVEIPDGQVVIFATNVAESGVTIVNCDNVISFGVQIEPQAGFDVNLGE
FT                   DGTFDSYHSLVQTKITTCAETQQMGRTGRTCPGTFWTTITTPLPEMTDFPRHAMSGAYL
FT                   TLMRNDEVMEMAEVRQRGGQWEDLLHTLRNLHPKFLPASLNFRAVKGEYPSITELKDFR
FT                   ELHIREGAQEDIFWRKLEVVQCIQYIDPITFYLLPNFP"
XX
SQ   Sequence 1667 BP; 504 A; 332 C; 440 G; 391 T; 0 other;

ab796347 Length: 1667  15-MAR-2013  Type: N  Check: 7871  ..

       1  gaagacaggc gagtccaaga tggtcgacca ctttgccttt attgatgtct
      51  cccgagatgg gcaggttatt cctgttcctt ttgttgacag aactaaaggt
     101  tatagcgggc tcccaatctt agatgagttt ggacacccgg tgggaatctt
     151  cggattcctc aggacaatga gggccaagac ggaaaatggc gtcatcgata
     201  gaccagagag cgctcgaccg agcgtgcaag ttgggcagtt tgatataaca
     251  acgaaagctg tcgacgtatt acaagcagtc agaggagctg gcgcaaatgg
     301  aaagtggctc agacttgggg ccccaacagc ttctgggaag agcacaagac
     351  ttgtgaagga aattggaaga ataatgtacc agaaagctcg caggcctatt
     401  catattgctg tgcttgaacc tagggtgttt gttgtgaata acttatggca
     451  agggcaaagc atgatgacta atgctgatgc aaaagactgt acattcttta
     501  atatcgtgcg taaacacggg cgattgtatg aaaacgacaa aacacagtcg
     551  cacaaagacc caagccaggc gaaagtcact ataacataca tgacctatgg
     601  atcaatggtg gccagtctag ggaaagaact caggtgggat ttagttatcc
     651  ttgacgagtt tcacagtcgg agtgacagtg acgtgttggc agtcgatgcc
     701  gcactgcaag tgttgggaca ttataatgga gtcatggcga tgaccgcaac
     751  tttctggcca ccagatccaa cgatgaacag gtttgttgat tactctatcg
     801  ggacggcgaa gaaatttcga atcgagagaa aggtgatcaa gaagttcgat
     851  tccgtcactg aaggtgaaga agggctgtat ttcaagatca gaggccctga
     901  cggtacattc tacgctctac caagggagag ttgcaacgca ggagggaaaa
     951  ctatcgtttt cctagacagt aaaaacaact gcgcgaaagg aatgaaggaa
    1001  ctcttggcaa caggaccggg agtgaatgta atgaccctta caagcgaaaa
    1051  cagggatgtc gaaattccag acggacaagt ggtgattttt gctacaaatg
    1101  ttgctgagag cggagtcaca attgttaatt gcgacaacgt aataagcttc
    1151  ggagtgcaga ttgagccaca ggcgggtttt gatgtcaatt taggagaaga
    1201  cggaactttt gactcttatc actcacttgt gcaaacaaaa ataacgactt
    1251  gtgcagaaac ccagcaaatg ggaagaaccg ggagaacatg tccaggaaca
    1301  ttttggacaa caataacaac acctctccca gagatgacgg acttccctag
    1351  acatgcaatg tctggggcgt atttaacgtt gatgagaaat gatgaagtta
    1401  tggaaatggc tgaggtcaga caacgtggtg gacagtggga agatttatta
    1451  cacacgttga ggaatttgca tccaaagttt ttaccagcca gcctcaattt
    1501  cagggctgtc aaaggggagt atcccagtat tactgagttg aaggacttta
    1551  gagagctcca cattcgtgaa ggggcgcaag aggacatctt ttggcggaaa
    1601  ctagaggttg ttcagtgtat tcaatacatt gacccaatca ccttctacct
    1651  tctgcctaac ttcccaa