Sequence of DPV Saccharomyces 20S RNA narnavirus

Saccharomyces cerevisiae narnavirus 20S RNA RNA-dependent RNA polymerase mRNA, complete cds.

ACC No: AF039063

Dated: 2002-06-20 | Length: 2514 | CRC: 334722496

                !!NA_SEQUENCE 1.0
ID   AF039063   standard; RNA; VRL; 2514 BP.
XX
AC   AF039063; M63893;
XX
SV   AF039063.1
XX
DT   04-JAN-1999 (Rel. 58, Created)
DT   20-JUN-2002 (Rel. 72, Last updated, Version 3)
XX
DE   Saccharomyces cerevisiae narnavirus 20S RNA  RNA-dependent RNA
DE   polymerase mRNA, complete cds.
XX
KW   .
XX
OS   Saccharomyces cerevisiae narnavirus 20S RNA 
OC   Viruses; ssRNA negative-strand viruses; Narnaviridae; Narnavirus.
XX
RN   [1]
RP   1-2514
RX   MEDLINE; 91286317.
RX   PUBMED; 2061340.
RA   Rodriguez-Cousino N., Esteban L.M., Esteban R.;
RT   "Molecular cloning and characterization of W double-stranded RNA, a linear
RT   molecule present in Saccharomyces cerevisiae. Identification of its
RT   single-stranded RNA form as 20 S RNA";
RL   J. Biol. Chem. 266(19):12772-12778(1991).
XX
RN   [2]
RP   1-2514
RX   MEDLINE; 98352075.
RX   PUBMED; 9685388.
RA   Rodriguez-Cousino N., Solorzano A., Fujimura T., Esteban R.;
RT   "Yeast positive-stranded virus-like RNA replicons. 20 S and 23 S RNA
RT   terminal nucleotide sequences and 3' end secondary structures resemble
RT   those of RNA coliphages";
RL   J. Biol. Chem. 273(32):20363-20371(1998).
XX
RN   [3]
RC   bases 8 to 2412 originally submitted in 1991
RP   1-2514
RA   Esteban R.;
RT   ;
RL   Submitted (18-DEC-1997) to the EMBL/GenBank/DDBJ databases.
RL   Inst. Microbiologia Bioquimica, CSIC/Univ. Salamanca, Av. Campo Charro s/n,
RL   Salamanca 37007, Spain
XX
DR   SWISS-PROT; P25328; RRPW_YEAST.
XX
CC   On Jan 1, 1999 this sequence version replaced gi:2696974.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2514
FT                   /db_xref="taxon:198598"
FT                   /note="W dsRNA"
FT                   /organism="Saccharomyces cerevisiae narnavirus 20S RNA "
FT                   /strain="37-4C"
FT   CDS             13. .2502
FT                   /codon_start=1
FT                   /db_xref="SWISS-PROT:P25328"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="AAC98925.1"
FT                   /translation="MKEPVDCRLSTPAGFSGTVPPPGRTKAARPGTIPVRRSRGSASAL
FT                   PGKIYGWSRRQRDRFAMLLSSFDAALAAYSGVVVSRGTRSLPPSLRLFRAMTRKWLSVT
FT                   ARGNGVEFAIASAKEFSAACRAGWISGTVPDHFFMKWLPEPVRRKSGLWAQLSFIGRSL
FT                   PEGGDRHEIEALANHKAALSSSFEVPADVLTSLRNYSEDWARRHLAADPDPSLLCEPCT
FT                   GNSATFERTRREGGFAQSITDLVSSSPTDNLPPLESMPFGPTQGQALPVHVLEVSLSRY
FT                   HNGSDPKGRVSVVRERGHKVRVVSAMETHELVLGHAARRRLFKGLRRERRLRDTLKGDF
FT                   EATTKAFVGCAGTVISSDMKSASDLIPLSVASAIVDGLEASGRLLPVEIAGLRACTGPQ
FT                   HLVYPDGSEITTRRGILMGLPTTWAILNLMHLWCWDSADRQYRLEGHPFRATVRSDCRV
FT                   CGDDLIGVGPDSLLRSYDRNLGLVGMILSPGKHFRSNRRGVFLERLLEFQTRKTVYEHA
FT                   VIYRKVGHRRVPVDRSHIPVVTRVTVLNTIPLKGLVRASVLGRDDPPVWWAAAVAESSL
FT                   LSDYPRKKIFAAARTLRPGLSRQFRRLGIPPFLPRELGGAGLVGPSDRVDAPAFHRKAI
FT                   SSLVWGSDATAAYSFIRMWQGFEGHPWKTAASQETDTWFADYKVTRPGKMYPDRYGFLD
FT                   GESLRTKSTMLNSAVYETFLGPDPDATHYPSLRIVASRLAKVRKDLVNRWPSVKPVGKD
FT                   LGTILEAFEESKLCTLWVTPYDASGYFDDSLLLMDESVYQRRFRQLVIAGLMREGRMGD
FT                   LLFPNWLPPSTVVSGFP"
XX
SQ   Sequence 2514 BP; 445 A; 740 C; 725 G; 604 T; 0 other;

  AF039063  Length: 2514  July 2, 2002 09:24  Type: N  Check: 3468  ..

       1  ggggctgatc ccatgaagga accagtagac tgccgtcttt cgacgccagc
      51  cggtttctcg gggacagtcc cccctcctgg tcgcactaag gcggccaggc
     101  cgggaaccat ccctgtgagg cgttcgcgtg gaagcgcgtc tgccttaccg
     151  ggtaaaatct acggttggag ccgtcgacaa cgggataggt tcgcgatgtt
     201  gctgtcgtct ttcgacgcgg ctctcgcggc ctactccggc gtcgtcgtct
     251  ccagaggtac acgctctcta ccgccatcgc tccggttatt ccgggcgatg
     301  acgcgtaagt ggctttcagt gaccgcccgc gggaacgggg tcgagttcgc
     351  catcgcttct gcgaaggagt tctcagccgc gtgccgcgcg ggttggattt
     401  cggggaccgt tccggaccac ttctttatga agtggcttcc ggaacccgtt
     451  cgccgtaaat ccgggttgtg ggcccagctt tcattcattg gacgttcgct
     501  ccccgagggg ggcgaccgcc atgaaatcga ggcgttggcc aaccacaagg
     551  ctgcgttgtc cagttccttt gaggttcctg cggacgtact tacgtctcta
     601  aggaattact cagaggactg ggcccgccgc cacctcgctg cggatcctga
     651  tccttcgctg ctctgtgagc cctgtacggg taacagcgca acgttcgaac
     701  ggactcgccg cgagggtggt tttgcacaat cgatcactga cttggtttcg
     751  tcctcaccca ctgacaacct ccctcccctt gagtcgatgc ccttcgggcc
     801  gacccaaggc caggcgttgc cagtgcacgt gctcgaggtc tctctctctc
     851  gataccacaa tggctcagac cctaagggta gagtctctgt ggtgagggag
     901  agaggccaca aggtccgtgt ggtctctgca atggagactc acgaacttgt
     951  actcggtcac gcggctaggc gcagactctt taagggactg cgtcgtgagc
    1001  gtcgtctcag ggacaccctc aagggtgact tcgaggcgac aaccaaggcc
    1051  tttgtgggtt gtgctggtac cgttatctca tcagatatga aatctgcctc
    1101  ggacctcatc cctctatcgg tcgcttctgc gatcgtagat ggtctggagg
    1151  cctctggtag actcctacct gtcgagatag ctggtcttcg ggcctgtact
    1201  ggccctcagc acttagtcta ccctgacggt tctgaaatca ccacacggcg
    1251  agggatcctt atgggactcc ccaccacgtg ggcgattctg aatctcatgc
    1301  acctatggtg ctgggattct gcggatcgtc agtatagatt agagggacat
    1351  cccttccgcg ccacggttag atcggattgt cgcgtttgcg gcgacgatct
    1401  aatcggcgtg ggtccggact ccttactacg gtcttatgac cgcaatttgg
    1451  gtctggttgg gatgatcctc tcccctggca agcacttccg cagtaacagg
    1501  aggggggtct tcctcgagcg tttactcgag ttccagaccc gtaaaaccgt
    1551  gtacgaacac gctgtgattt accgtaaggt aggtcaccgt cgcgtgcccg
    1601  tggatcggtc tcacattccc gtcgtcaccc gagtgaccgt cctgaatacc
    1651  atcccactta aagggttggt tcgggcttcg gttctcggtc gtgacgatcc
    1701  tcccgtttgg tgggctgcgg ccgtggcgga gtcttcactg ctcagtgact
    1751  atcctcgtaa gaagatattc gctgcagcac ggactctccg ccctggcctc
    1801  tcccgccaat tcagaaggtt gggaatccca ccattcctcc cccgtgaact
    1851  cgggggcgca ggcttggtcg gaccttccga tcgtgtcgac gcccctgcgt
    1901  tccacaggaa agccatttct tccctggtgt ggggctctga tgccactgct
    1951  gcatacagtt ttatccgtat gtggcagggg ttcgagggcc acccttggaa
    2001  gacggcggcc tcacaggaga cggacacttg gttcgccgac tataaggtca
    2051  cccggccggg taagatgtac ccagaccgtt acggctttct tgatggagag
    2101  tctcttcgga ccaagtcaac tatgttgaac tcggccgtct atgagacttt
    2151  tctcggacct gaccctgacg ccacccatta cccttccttg cgaatcgtcg
    2201  ccagtagact ggcgaaggtc cggaaggatt tggtaaatcg gtggccatcg
    2251  gtcaagcccg tggggaagga tcttggtacc atcttagaag ctttcgaaga
    2301  gtcaaagttg tgcacccttt gggtgacacc ttacgacgct tcgggctact
    2351  ttgatgattc cttgttactg atggatgaga gcgtgtacca acgtagattc
    2401  cggcaactgg tcattgccgg cttgatgcgt gagggccgga tgggcgactt
    2451  attgtttccc aactggcttc caccatccac cgtggtctcg ggtttcccct
    2501  gaggccacgg cccc