Sequence of DPV Zea mays Sto-4 virus
Zea mays copia-like retrotransposon Sto-4, partial sequence.
ACC No: AF082133
Dated: 1999-02-08 | Length: 6383 | CRC: -1169459584
!!NA_SEQUENCE 1.0
ID AF082133 standard; genomic DNA; PLN; 6383 BP.
XX
AC AF082133;
XX
SV AF082133.1
XX
DT 08-FEB-1999 (Rel. 58, Created)
DT 08-FEB-1999 (Rel. 58, Last updated, Version 1)
XX
DE Zea mays copia-like retrotransposon Sto-4, partial sequence.
XX
KW .
XX
OS Zea mays
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade;
OC Panicoideae; Andropogoneae; Zea.
XX
RN [1]
RP 1-6383
RX MEDLINE; 99016103.
RX PUBMED; 9799276.
RA Marillonnet S., Wessler S.R.;
RT "Extreme structural heterogeneity among the members of a maize
RT retrotransposon family";
RL Genetics 150(3):1245-1256(1998).
XX
RN [2]
RP 1-6383
RA Marillonnet S., Wessler S.R.;
RT ;
RL Submitted (31-JUL-1998) to the EMBL/GenBank/DDBJ databases.
RL Botany Department, University of Georgia, Plant Sciences Bldg., Athens, GA
RL 30602, USA
XX
DR MaizeGDB; Probe/630456; CL1610_1.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6383
FT /db_xref="taxon:4577"
FT /mol_type="genomic DNA"
FT /organism="Zea mays"
FT repeat_region <1. .>6383
FT /rpt_family="copia-like retrotransposon Sto-4"
FT LTR <1. .117
FT /note="5' long terminal repeat"
FT primer_bind 119. .129
FT /note="similar to the reverse-complement of the 3' end of
FT the wheat initiatior methionine tRNA"
FT CDS 1786. .6006
FT /codon_start=1
FT /db_xref="GOA:Q9ZT25"
FT /db_xref="InterPro:IPR001584"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="UniProt/TrEMBL:Q9ZT25"
FT /product="gag-pol polyprotein"
FT /protein_id="AAD12997.1"
FT /translation="MLISQIAQMKPLDGSNYHSWREDIDMITTVGEIDYALRFDKPVEP
FT TVGTPNYDHRWMQYSIDKVKWERSNDKCMIILKRSIKEPLKSSIPECETAKEYLERVAS
FT HHQGSSKAYACSLMTEFVNAKYDGNGVRPFIQKMISIVAKINKYLGSPLHEEFVVFMIM
FT KSLPKEFETFHIQYNTSVTDKWNIDQLLAQCVQEEERLKQTGDSVNLIKGNVPRQNKNS
FT KKKFKKQGKQNNQASSSNNNQPRQGGGFSVPPDTCLYCKKTGHYKRKCPEFLQYLLESG
FT KDQVTFVNESLYLEYPSYSWWIDSSATVHVANSLQGLRTSQRLPKGRRTIRVANGVEAA
FT VEAIGDIHLKLVNGFVLLLRDVLYVPSLRRNLISVSRLDDQHIHCHFGDRQCVIQFDNK
FT DVGLAIRRDMLYLLSQSDVVNVLDIPENDPASSGRKRKRSDGETSSKLWHYRLGHISRG
FT RIESLVKEQILHPLDFTDLEQCRGCIKGKFAKQIKKDAKHSTRVLEIIHTDICGPFPVR
FT TVDGFNSFITFTDDYSRYGYIYPIKERSEALDKFKQFKAEVENQHDLKIKIVRSDRGGE
FT YYGRHTEYGQVPGPFARFLRENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSMLSYSN
FT LPLGLWMEALKTAMHILNRVPSKSVARTPYELWIGRKPTLNYFHIWGCPAEARIFNPGQ
FT GKLDERTTSCHFIGYPDRSKGYRFYCPDRQTKFIETRHAIFLEDDMIKGSKVLREVDLQ
FT EKRIYVPFPMVEEPHFSIPTVVTPTVTPTVGETPTANVASSSATTTEQVASPSAHIGPE
FT PVAQDSSEDDDSVAPSDAPLQEPQVESEPETSLRRSQRLRKSAIPDDYEVYAAENIECD
FT EIHMSEDIDTEGDPTTYEAAMRSANSSKWLSAMEDELESMRMNKVWDLEVIPHGAKTVG
FT CKWVYKTKRDSRGNIERYKARLVAKGFTQREGIDYHETFSPVSTKDSFRIIMALVAHFD
FT LELHQMGVKTAFLNGELEENVFMAQPKGFVVSGKEHMGCHLRRSIYGLKQASRQWYIKF
FT DQTIRKFGFEENKEDNCIYAKFRKGKYIFLVLYVDDILLASSDKDLLAETKGFLSSNFD
FT MKDMGEASYVLGIEIHRDRQKGVLGLSQKSYIENVLKRYNMHKCNASPGPIVKGDKFGE
FT YQCPKNQYEKNKMKSVPYASAIGSIMYAQVCTRPDLAFTTGMLGRYQKNPGIEHWKAVK
FT KALRYLQGTKGLMLTYRRSNSLQIVGYADADWGGCRDTLKSTSGYVFMLSGGAISWKSC
FT KQTARASSTMHAEFVATYEATGQAIWIKKFVPGLRVVDSIERPLRIYCDNEPAVFFSHN
FT NKSSGSAKYIDIKCYIVKEKILDHTIQVEHIRTHQMLADPLTKGLPPSVFSKHAAGMGL
FT REYL"
FT misc_feature 6183. .6199
FT /note="polypurine tract"
FT LTR 6201. .>6383
FT /note="3' long terminal repeat"
XX
SQ Sequence 6383 BP; 2021 A; 1230 C; 1494 G; 1638 T; 0 other;
AF082133 Length: 6383 May 9, 2005 17:26 Type: N Check: 304 ..
1 tggtatgtta acctataccc ctcagtagaa tagatctact catcatcgag
51 gtattttaga cacggattgg tattctaggg acttaggaaa cgatcctaag
101 caccagaaaa tctaacaatg gtatcagagg gccacctaag aaccctagat
151 ctcctaatcc gcatcgtttt atgagatcac agaaaggtct aggatatatg
201 tgatgaactc atttttttta tcatcattca tcacccatag aacagagatt
251 agaatagaaa gaaatagttg atgctctcgg gttagggttt tccctaaccc
301 taagatttag ttttgggcac gataagagaa cagtgtctcg gcctcaaaca
351 gagagctcac ataacttgtc ttgggttagg gtttatgacc taaccctaat
401 cggttaagcc gtcaacagag acgatgcaca ggcttatggg atccaacgat
451 ccgcggccaa gaaaacaaag tcaataagaa aatacagata gggttagggt
501 tttgaactct aaccgaaata atcccagaac cgcacgctct gtccgaaggt
551 ccaatatcgt ttttgggttc aaatttgtga tcagaaaaca tgtatagaaa
601 tcagatcaag tgcgcagagc actgttcaca catccatagg gcatctggac
651 caaaataaca tcacagaaaa gctcgaataa tcagatccat gcttcaaaac
701 cctccaaatc tcgattccca ttacatatta ttcatttctt acaagcatac
751 atcacgttaa gtgggatcga ataaaaaaaa ggggggagaa aatcatgaca
801 gagatggcca tgcagccaag tgcatgcaga aatgtccatg cggcaagtag
851 aaacgaataa aaaaaaacag aaagcaaaac agagagtgca aggggcggct
901 gtgctgaaat gtgcagggcg cagtcggcca gaggccagcc gctggtgctt
951 cctggcggcc gaatgaaagt gagagaccgg aacaaaaaaa aagggaagag
1001 ggaggtgcgg tcggcagtgc cacagctccc aggcggctga gagagaagga
1051 ggccgccggc cagagttttc ggctgagaga gtagaaagcc taggtttcca
1101 ccggtcaccc cgagatttgc gtcttttata aacctagcta cagtagctcg
1151 agagatcctg gccgctggtt ttgatccaac gacacaggat tagacggggg
1201 gcgccggcca ggccgagtgg gccgttcagg ctgggccgcc agcggcgaat
1251 tgggccgcaa ggctgaccag ggccgaaatg gcttcaaatt ttttttctgg
1301 aattttattt tctatttcca gaaattagaa acacagaaaa gaaattagaa
1351 aaacagtgca gaaaatttag aattatattt ttccagttat agaaaatttc
1401 agagatattt atggactatt tttttttccg ctgcgtactt tggtactttt
1451 atttatattt tatgcaattt ttcagttaat tatgaaacca acgtggatta
1501 attattgttt aaattggcat agaattcaga aaattttgtg gtgattgaat
1551 attttaacca acgttggata ttgttaccac aatttaatac aagtttatgt
1601 tttctagatc atccaacgat ggtttagaaa ttttgtgatc agaaattttc
1651 atagatatgg catggttatt atttgaccaa cgttgaatat ttaattcatg
1701 catgttctat gattcagtat tcagtattta tttcagatgt cctaaatatt
1751 ttctatttta attttgcaaa ggtgctcata ccgccatgct gattagccag
1801 attgctcaga tgaaaccgct agatggtagt aattaccatt cttggcggga
1851 ggatatagac atgataacca cagtgggtga gatagattac gcactgaggt
1901 ttgataaacc agttgagccc acagtgggca ctcccaacta tgaccacagg
1951 tggatgcaat acagcatcga caaggtcaag tgggagagat caaatgacaa
2001 atgtatgatt attcttaaga ggagcatcaa ggagcctctt aagagttcca
2051 taccagagtg cgagactgcc aaagaatacc ttgagagggt agcctctcat
2101 caccaagggt cttctaaggc ttatgcttgc tctctaatga cagaatttgt
2151 caatgcaaaa tacgatggaa atggtgtcag accattcatt cagaaaatga
2201 tatccatcgt agctaagata aacaagtacc tcgggtctcc tttacacgag
2251 gaatttgtag tatttatgat aatgaagtct ctgcccaagg agtttgagac
2301 ttttcacata cagtacaaca ctagtgtcac tgataagtgg aatatagatc
2351 aactcttggc acagtgtgtc caggaggaag agaggttaaa gcagactgga
2401 gactctgtca acctcatcaa aggcaatgtc cccagacaga acaagaactc
2451 aaagaaaaag ttcaagaagc aaggtaaaca gaataaccag gcttcctcga
2501 gcaataataa tcagccaaga caaggaggcg gtttctcagt tccccctgat
2551 acctgcctct attgcaagaa gacaggtcat tacaagagga agtgccctga
2601 attcctgcag tatctactag agagtggtaa ggaccaagtt acttttgtaa
2651 atgagtcttt atacttagaa tatcccagtt attcttggtg gattgactcg
2701 agtgcaactg ttcatgttgc aaactctcta cagggactcc gtacaagcca
2751 aaggctccca aagggccgaa gaacaattag agtggcaaat ggagttgaag
2801 cagcagtcga ggccattgga gatatacatc ttaaattagt taatggtttt
2851 gtactgttgt tgagagacgt actttatgta ccttccttgc gaaggaacct
2901 tatttcggtt tctagattag atgatcagca cattcattgc cattttggtg
2951 atagacagtg tgtcattcag tttgataata aagatgttgg tctcgccatc
3001 cgacgagata tgctttattt actttcgcaa agtgatgttg ttaatgtatt
3051 agatatacca gaaaacgatc cagccagcag tggcaggaaa agaaaacgaa
3101 gtgatggaga aacctcgtcg aaattatggc actatcgttt gggccatatt
3151 tcgaggggga gaatagaaag tcttgttaag gaacagattc tccatcccct
3201 agacttcaca gacttagagc aatgcagagg ttgcattaag ggtaaattcg
3251 cgaagcagat taagaaagat gctaagcata gtacgagagt gttagaaatt
3301 attcatacag atatctgtgg tccttttcca gttaggacag tagatgggtt
3351 taattcgttc ataaccttca cagatgacta ctctcgctac ggttatattt
3401 atcctattaa ggaaagatca gaagctttag acaagtttaa acagttcaag
3451 gctgaagtag agaatcaaca cgatttgaag ataaagattg ttcgatcaga
3501 tcgtgggggg gagtactatg ggcgccatac cgagtatggc caggtcccag
3551 gacctttcgc gaggttccta agagaaaacg gtattgttgc tcaatattca
3601 acacctggcg aaccacaaca gaatggggtt gccgaaaggc gtaacagaac
3651 gctaatggat atggtaagga gtatgctaag ttactctaac ctgccattgg
3701 gtctatggat ggaggcttta aaaaccgcta tgcatatact caacagagtt
3751 cctagtaaat cagtggctag aactccatat gagttgtgga ttggcagaaa
3801 acccacgctc aactacttcc atatatgggg ttgtccagca gaagctagaa
3851 tatttaatcc tggacaggga aagctagatg agagaaccac tagctgccat
3901 tttattggct accctgacag atcaaaggga tacagattct actgccctga
3951 cagacaaacc aagttcatag aaaccagaca tgccattttc ttagaggatg
4001 acatgatcaa ggggagtaag gtactcagag aggttgacct tcaggaaaag
4051 aggatatatg tcccgtttcc gatggttgaa gaaccacact tctcgatacc
4101 cactgtggtt acaccaacag tcacaccgac tgtgggtgaa acacctactg
4151 caaatgtggc atcatctagt gcaactacta cagagcaagt agcttcacct
4201 tctgcgcata ttggccctga gccagttgca caggacagtt cagaagatga
4251 tgatagtgtt gcgccaagtg atgcaccatt gcaggagccc caggtagaat
4301 ctgaaccaga aacaagtctc aggagatcac agagactcag aaaatctgcg
4351 attcctgatg actatgaagt ctatgcagca gaaaacatag aatgtgatga
4401 gattcatatg agtgaggaca ttgatacaga aggtgatccc actacatatg
4451 aagctgctat gagaagtgca aattcatcca aatggttatc tgccatggaa
4501 gatgaattag aatccatgag aatgaacaaa gtttgggact tagaagtcat
4551 tccccatgga gccaaaacag taggctgtaa atgggtctac aagacaaagc
4601 gtgactccag agggaacata gaaagataca aggctagact tgtggccaaa
4651 gggttcacac agagagaagg cattgactac catgaaacct tctcacctgt
4701 ctcaacaaaa gattcattca ggatcataat ggcactagtt gctcattttg
4751 atctagagct ccatcagatg ggtgtaaaga cagcattcct aaatggagag
4801 ttagaagaaa acgtgttcat ggcacaacca aagggttttg ttgtgagcgg
4851 taaagaacac atgggatgtc acttgaggag gtccatttat ggattaaaac
4901 aggcctccag acagtggtac atcaagtttg atcagactat aagaaagttt
4951 ggtttcgagg aaaacaagga agacaattgc atttatgcaa aatttagaaa
5001 aggaaagtat atcttccttg ttctgtatgt cgatgacata ctcttagcta
5051 gtagtgataa ggatctacta gcggaaacaa aagggtttct ttcctcgaat
5101 tttgatatga aagacatggg agaagcctcc tatgttcttg gaatagaaat
5151 tcacagagac agacaaaagg gagtattagg actctcacag aagtcatata
5201 tagaaaatgt actaaagagg tataatatgc acaagtgtaa tgcctcgcct
5251 ggtccaatag tcaagggtga taagtttggg gaatatcagt gtcccaagaa
5301 tcagtatgag aaaaacaaga tgaagtcagt accatatgct tcagctatcg
5351 gaagcattat gtatgctcaa gtatgtactc gccctgactt agcttttacc
5401 accgggatgc ttggacgcta tcagaagaat ccaggcatag aacactggaa
5451 agcagtcaag aaggctctaa ggtaccttca aggtactaaa ggtctcatgc
5501 ttacgtacag aagatctaat tccctacaaa tagttggcta tgcagatgcc
5551 gactggggag ggtgtagaga tacactgaag tccacttcag ggtatgtctt
5601 tatgctttct gggggagcta tttcttggaa gagctgcaaa cagacagcga
5651 gagcatcgtc gacaatgcac gctgagtttg tagctacgta tgaggcaact
5701 ggacaggcga tatggataaa gaaattcgta cccggattaa gagtggttga
5751 tagcatagag cgaccactga gaatttactg cgacaacgag ccagcggtat
5801 ttttctccca taacaataag tcaagtggct ctgccaagta cattgacatt
5851 aagtgttata ttgttaagga gaagattctg gatcacacca ttcaagttga
5901 gcatataaga acccatcaga tgcttgcgga tccgctcaca aaaggtcttc
5951 cacccagcgt gtttagtaag cacgcagccg gcatgggatt aagggagtac
6001 ctatgatcta gaatcacagg ggctacagat tgcaacctag taaaatcttt
6051 cgttctgaag caggggagca tgttgtagtc aatgagtgca gtgatactta
6101 atagatcatt gtcacgcatt ggtctctatg tgtaaacttg ttaaaggacg
6151 gaatttaata aaagtttgag tgtgaggtat gtagagaaca aaggggagat
6201 tgttaggatg tgtcctctac actagccggt taacagtaac cggggtaggg
6251 ttaatcctaa ccgtctaacc gcgcccctga tcgggggggc tatcctaacc
6301 attggttgca gcccccggtc acacgacgcc atataaatag attaaggggg
6351 ccgacgggtt tagccaacgc taatcgctcg acc