Sequence of DPV Norwalk virus
Norwalk virus, complete genome.
ACC No: AF093797
Dated: 2001-08-31 | Length: 7598 | CRC: -1648508082
!!NA_SEQUENCE 1.0
ID AF093797 standard; genomic RNA; VRL; 7598 BP.
XX
AC AF093797;
XX
SV AF093797.1
XX
DT 20-OCT-1998 (Rel. 57, Created)
DT 31-AUG-2001 (Rel. 69, Last updated, Version 4)
XX
DE Norwalk virus, complete genome.
XX
KW .
XX
OS Norwalk virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Caliciviridae;
OC Norovirus.
XX
RN [1]
RP 1-7598
RX MEDLINE; 20254531.
RX PUBMED; 10795514.
RA Schreier E., Doering F., Kuenkel U.;
RT "Molecular epidemiology of outbreaks of gastroenteritis associated with
RT small round structured viruses in Germany in 1997/98";
RL Arch. Virol. 145(3):443-453(2000).
XX
RN [2]
RP 1-7598
RA Schreier E., Doering F., Kuenkel U.;
RT ;
RL Submitted (24-SEP-1998) to the EMBL/GenBank/DDBJ databases.
RL Molecular Virology, Robert Koch Institute, Nordufer 20, Berlin 13353,
RL Germany
XX
DR GOA; Q9YS15.
DR SPTREMBL; Q9YS13; Q9YS13.
DR SPTREMBL; Q9YS14; Q9YS14.
DR SPTREMBL; Q9YS15; Q9YS15.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7598
FT /country="Germany"
FT /db_xref="taxon:11983"
FT /mol_type="genomic RNA"
FT /organism="Norwalk virus"
FT /strain="Norwalk-like"
FT /isolate="BS5"
FT CDS 5. .5359
FT /codon_start=1
FT /db_xref="GOA:Q9YS15"
FT /db_xref="SPTREMBL:Q9YS15"
FT /note="ORF1"
FT /product="polyprotein"
FT /protein_id="AAC64602.1"
FT /translation="MMMASKDVVATNASSTGDNSNTMKDRFLARLKSLGNTKPIKIENT
FT QMALGLLSREPSPSPNRDPPKQQRDRAPRSVAETQQAMGWTDPPVDQNLPTWEELSQSE
FT KQKIMAENSKWFDAGGLGPATLPSNYCRVQDNGDGDQQVKWSAKDGVNLGVDALTTVQG
FT PPWNLCPLPPVDQRNSGAAKEPLIGDMIEFYEGHIYHYAMYIGQGKTIGVHSPRAAFSI
FT PRITIHPIAAWWRVCYVPTQEQRLSYDQLKELENEPWPYAAVTNNCYEFCCRIMDLQDT
FT WLERRLVTSGRFNHPTQDWSKDTPDFQQDSKLEVVRDAVLAAINGLVSRPFKNLLNKLK
FT PLNILNLLSNCDWTFMGIVETIILLMELFGVFWDPPDVSNFIASLLPDMHLQGPEDLAK
FT DLIPLILGGIGLAIGFTKDKVTKVMKSAVDGLRAATQLGQYGLEVFAVIKKYFFGGDQT
FT EKTLKDIEAAVIDMEVISTTAITQLVRDKQSARTYMAILDAEEEKARKLSVKHADPHVV
FT STTNALISRISMARSALAKAQAELTNRVKPVVIMMCGPPGIGKTKAAEYLAKRLANEIR
FT PGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQAIADTAPLTLNCDRIE
FT KKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVEQVRRVSPGDTGA
FT LKDCFKDDFSHLKMEIAPQGGFDNQGNTPFGKGTMRPTTINRLLIQAVALTMERQDEFQ
FT MQGPTYDFDSDRISAFTSLAKANGLSLIGMASLGKRLRSVNSIHGLKNALTGYTITPCT
FT IKWQARFYDIESDGNVVKICENTSAQTQRQQSIDTAVLALTRLRAARAAAYASCLQCAI
FT TTVLQMAGSALVIHRAVKRMFGTHTNAVSLEGPDREHRCRVHQAKANGRGPIGHDDVIE
FT KYGLCETEDEGTQEQEATIELPTASHEGKNKGKTKKGRGRKANYNAFSRRGLNDEEYEE
FT SRRLEKEKGGNYSIQEYLEDRQRYEEEMAEVQAGGDGGIGETEMEIRHRVFFKSKTKRN
FT RQEERRQLGLVTGSEIRKRKPIDWTPPKNEWADDDREVDYTEKINFEAPPTMWSRVTRF
FT GSGWGFWVSPTVFITTTHVIPIGAKEFFGEPLDSIAIHRAGEFTQFRFSRKIRPDLTGM
FT VLEEGCPEGVVCSILIKRDSGELLPLAVRMGAVASMKIQGRLVHGQSGMLLTGANAKGM
FT DLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNTVVCAVQAGEGETTLEGGDKGHYA
FT GHEIVRNSKGPALSSKTKFWRSTPEPLPPGVYEPAYLGGKDPRVKGGPSLYQVLRDQLK
FT PFAEPRGRMPEPGLLEAAVETVTSMLEQVMDTPTPWSYADACQSLDKTTSSGYPYHKRK
FT NDDWNGTTFVGELGEQAAHANNMYELGKSMKPLYTAALKDELVKPEKIYQKIKKRLLWG
FT ADLSTVIRSARAFGPFCDAIKSHVIKLPIKVGMNSIEDGPLIYAEHAKYKNHFDADYSA
FT WDSTQNRQIMMESFSIMCRLTASPDLAAVVARDLLAPSEMDVGDFVIRVKEGLPSGFPC
FT TSQVNSINHWLITLCALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIDFDPARLTQVLR
FT EYGLRPTRPDKSEGPIILRKNVDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPN
FT HDDPNETLIPHPQRKIQLISLLGEASLHGEKFYRKISGRVIQEIKTGGLEMYVPGWQAM
FT FRWMRFHDLGLWTGDRDLLPEFVNDDGV"
FT CDS 5343. .6965
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9YS14"
FT /note="ORF2"
FT /product="capsid protein"
FT /protein_id="AAC64603.1"
FT /translation="MMMASKDAPPSPDGASGAGQLVPEVNTADQISMDPVAGASTAVAT
FT AGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNGWV
FT GNMRVRILLAGNAFTAGKVIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVELPLE
FT DVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSFLFLV
FT PPSVEQKTRVFSVPNIPLKDLSNSRVPTLIQGMFVSPDVNQSVQFQNGRCQIDGQLQGT
FT TPVSLSQLCKIRGRTSSNTRVLNLSEVDGTPFVPLESPAPVGFPDIGGCDWHVGFTFEA
FT RDQDPSQNVTFATNDSSFVPYLGSISPHNGDGFHSGDIIGSLDWISAPSDGSALDVWSI
FT PKYGSSLPDVTHLAPAVFPPGFGEVILYFHSKFPGSGPTDKLRVPCLIPQEFITHFCNE
FT QAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSISSGPQTLPINGVFVFVSWV
FT SRFYQLKPVGTASAARRLGLRRI"
FT CDS 6965. .7594
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9YS13"
FT /note="ORF3"
FT /product="unknown"
FT /protein_id="AAC64604.1"
FT /translation="MAQAIIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQNT
FT FQHDREMIGYQVQASNALLAKNLNTRYTLLQAGGLSSADAARAVAGAPVTRIVDWNGTR
FT VAAPTSSATTLKSGGFMPVPIPLTQKSKQPLMTGQDNPNYAASSISRTASWVQSQNSLR
FT SMPPFHNDALRTVWVTPPGSSSTSSMQSSFYGVFNTDRLPLFANRR"
XX
SQ Sequence 7598 BP; 2025 A; 1822 C; 1888 G; 1863 T; 0 other;
AF093797 Length: 7598 January 8, 2004 16:02 Type: N Check: 4613 ..
1 gtgaatgatg atggcgtcga aagacgtcgt tgcaactaac gcttcaagca
51 ctggtgacaa tagtaacaca atgaaggatc gctttttagc gagactcaaa
101 agtttgggta acaccaagcc cataaaaatt gaaaacacac aaatggctct
151 cgggcttcta agccgggagc catcaccatc gcccaaccgt gaccctccta
201 aacaacaacg ggacagggca ccacggagtg tggctgaaac ccaacaggca
251 atgggatgga cagacccacc cgttgatcaa aacctgccaa catgggagga
301 gttgagccag tctgagaagc agaaaatcat ggctgagaat tcaaagtggt
351 ttgatgctgg tggtctaggt cctgccacct tgccatcgaa ttattgtcgt
401 gttcaagaca acggtgatgg tgaccagcag gttaaatgga gtgctaaaga
451 tggtgtcaat ctgggggttg atgccctaac aactgtccaa ggccccccat
501 ggaatttatg cccacttccc ccagtcgatc aacgcaatag tggggcagcc
551 aaggaacccc tgattggaga tatgattgag ttctatgaag ggcacatata
601 ccattatgcc atgtacatag gtcaggggaa aacaattggt gtgcattccc
651 ctagggccgc tttctccata cctaggatta ccatacaccc aatcgctgcc
701 tggtggaggg tatgctatgt ccccacccag gaacaaaggc tgagttatga
751 ccaacttaaa gagcttgaaa atgaaccttg gccatatgca gctgttacta
801 acaactgcta tgagttttgc tgcaggataa tggatctaca ggatacgtgg
851 ttggagagga gattggtaac atcaggtcgc ttcaaccacc caactcagga
901 ctggtccaag gacactccag acttccagca agatagtaag ttggaggttg
951 tccgtgatgc cgtcttagca gcaattaatg gcctggtctc acgcccgttc
1001 aagaacttgc taaataagct taaaccacta aatatcctca acctactgtc
1051 caactgtgac tggaccttta tgggcatagt tgaaaccata atactgttga
1101 tggaactctt tggggtcttt tgggaccccc ctgacgtgtc caacttcata
1151 gcttctctcc tccctgacat gcaccttcaa ggcccggaag acttggccaa
1201 agatctgata ccactcatac tgggtgggat tgggttggcc ataggtttca
1251 ctaaggataa agtgacaaag gtgatgaaaa gtgcagttga tggtttgcgt
1301 gcagctaccc aactggggca atatggcctg gaagtcttcg cagtcatcaa
1351 gaagtatttc tttggaggtg atcagactga gaagacactt aaagacattg
1401 aggcagcagt cattgatatg gaggttatct ccacgacagc cataacgcaa
1451 ctagttagag acaagcaatc tgccaggact tatatggcca tactagatgc
1501 tgaagaggaa aaggctagaa aactatctgt gaaacacgct gacccccacg
1551 tggtgtcaac caccaacgca ttgatttcac gcatttcaat ggcacggtct
1601 gccctggcta aggcacaagc tgagttgaca aacagggtta agccagtggt
1651 gataatgatg tgtggccctc ctggtatagg caagacgaag gctgccgagt
1701 acctagccaa acggcttgcc aatgaaatac gcccaggtgg gaaagttggt
1751 ctagttccac gtgaagctgt cgaccactgg gacggttatc atggtgagga
1801 ggttatgttg tgggatgact atggaatgtc aaagatagca gatgactgta
1851 acaaactgca agcaatcgct gatacagccc ctttaacact caactgtgac
1901 cgaatagaga agaaaggtat gcagttcgtg tcagatgcta ttgttataac
1951 caccaacgcc cccgggccag cccctgttga ctttgtcaac ttaggacctg
2001 tctgtcggcg tgttgacttc ctagtctatt gctccgcccc agaagtcgaa
2051 caggtacggc gtgtcagccc tggagatact ggcgcgctca aagattgctt
2101 caaagatgat ttctctcacc ttaagatgga aattgcacca cagggtggat
2151 ttgacaacca agggaacaca ccatttggca agggcaccat gcgtcccacc
2201 accataaaca ggcttttaat ccaggcagtc gccctcacca tggaacgcca
2251 ggatgaattt caaatgcaag gaccaaccta tgattttgac tcagacagga
2301 tttcagcttt cactagccta gccaaagcta atggcttaag cttgattggt
2351 atggcaagcc tcggaaagag gctacgtagt gtcaactcaa tccatggcct
2401 caaaaatgcc ctgactggtt acaccatcac accctgcacc ataaaatggc
2451 aagctaggtt ttatgacata gagtctgatg gcaatgtggt caagatatgt
2501 gagaacacaa gtgcacaaac ccaacgccaa cagtccattg acaccgctgt
2551 cctcgcgctc acccggctca gggctgccag ggctgccgca tatgcatctt
2601 gtctgcaatg tgccatcacg actgtgttgc agatggcggg ttcagctctt
2651 gtcatacacc gagccgtcaa gcgtatgttc ggcacccaca ctaatgccgt
2701 ctccttagag ggtcctgaca gggaacaccg ctgtcgagtg catcaggcta
2751 aggctaatgg tcgtggcccc attggacatg atgatgttat agaaaagtat
2801 gggctgtgtg aaacagaaga tgagggcacc caagagcaag aagccaccat
2851 tgaattgccc actgcaagcc atgaaggcaa gaacaaaggg aaaaccaaaa
2901 agggccgagg ccgaaaagcc aattacaatg ccttctctag acgtggtctc
2951 aatgatgagg agtacgagga gtccagaaga ttagagaagg aaaaaggtgg
3001 aaattacagc atccaagaat accttgaaga caggcagcgc tatgaggagg
3051 agatggctga agtgcaggcc ggcggcgatg gtggaatagg tgagacagag
3101 atggagatac gccatcgagt cttctttaag tccaagacaa agagaaaccg
3151 tcaggaagaa cgtcggcagc ttggcttggt tacaggcagt gagataagga
3201 agagaaaacc tatagattgg acccccccca aaaatgaatg ggcagatgac
3251 gacagagagg tggactacac tgaaaaaata aactttgaag cccctcccac
3301 catgtggagc cgagtcaccc gattcggctc cggatggggg ttctgggtca
3351 gccctacagt gttcattact actacccatg ttataccaat tggggccaaa
3401 gaattctttg gggaaccatt ggattccatt gccatacacc gtgcaggaga
3451 gttcacacag ttccgtttct caaggaagat acggccagat ctaacaggga
3501 tggttcttga ggaagggtgt cctgaagggg tggtttgctc gatcttgatc
3551 aagcgtgatt caggtgagct gctaccattg gctgtgcgta tgggggctgt
3601 ggcttcaatg aagatacagg gtcggttggt ccatggtcag tcgggtatgc
3651 tcctgactgg tgccaatgca aaaggaatgg atctcggcac tctcccaggt
3701 gattgtggtg caccctatgt ctacaagaga aacaatgatt gggttgtttg
3751 cggtgtccac gcagcagcca ccaagtcagg caacactgtg gtctgtgcag
3801 tgcaggcagg tgagggggag accactctag aaggaggtga caagggtcat
3851 tatgctgggc acgaaatagt caggaacagt aagggccctg cactctcatc
3901 taaaactaaa ttctggagat caacaccaga acccctaccc ccaggtgtct
3951 atgaaccagc ttacctagga ggaaaagacc ctagagtcaa gggtggccct
4001 tctttatatc aagtccttcg ggaccaactg aaaccttttg ctgagccacg
4051 tgggcgcatg ccagagccag gtttactgga ggctgctgtt gagacagtga
4101 cttctatgct ggaacaggtt atggacacgc ccacgccctg gtcatatgct
4151 gatgcttgcc agtcattaga caagaccact agttctggat acccctacca
4201 taagagaaag aatgatgatt ggaatggcac cacctttgtg ggagaacttg
4251 gtgagcaagc agcccacgca aacaacatgt atgagctagg taagtccatg
4301 aagcccctat atacagcagc cctcaaagat gaacttgtca aaccagagaa
4351 gatctatcaa aaaattaaga aaaggttact ctggggggct gacctgtcaa
4401 ccgtcatacg atctgcacgg gcttttggcc ccttctgtga cgccataaag
4451 tcccatgtaa tcaagttgcc tattaaagtt ggtatgaatt caattgagga
4501 tggcccccta atctatgctg aacatgcaaa atataagaat cactttgatg
4551 cggattactc agcttgggac tcaacacaaa ataggcaaat tatgatggag
4601 tctttctcaa tcatgtgccg cctcaccgcc tcaccagatt tggcggctgt
4651 tgtggctaga gacctactag ccccttccga aatggatgtg ggagattttg
4701 taataagggt taaggagggt ctcccatcag gcttcccctg tacttcacaa
4751 gtcaatagca taaatcattg gctcattaca ttgtgtgcct tgtctgaggt
4801 cacgggcttg gcacccgatg ttatacaatc acagtcatat ttctccttct
4851 atggggacga tgagatcgtg tccacagaca ttgattttga cccggctcga
4901 ctcacccagg tccttaggga gtatggactg cgtccaactc gcccagataa
4951 aagtgagggc cccataatct tgaggaaaaa tgttgatggc ttggtattcc
5001 ttaggcgcac tatctccaag gatgcagctg gttaccaggg ccgattggat
5051 agaaactcca tagaaagaca gctatggtgg actcgtggcc ccaatcatga
5101 tgacccaaat gagacgctca ttccccaccc ccaaagaaag atccaactta
5151 tatcactgct gggagaggca tcacttcatg gggaaaagtt ttacaggaaa
5201 atttcaggta gagtcatcca agagatcaag acaggtggac tggaaatgta
5251 tgtgccaggc tggcaggcca tgttccgctg gatgcgtttt catgaccttg
5301 gactttggac aggagatcgc gatctcctgc ccgaattcgt aaatgatgat
5351 ggcgtctaag gacgccccac catcgcctga tggcgccagt ggcgctggcc
5401 agctagtgcc ggaggttaat acagctgacc aaatttcaat ggatcctgtt
5451 gcgggtgctt ctaccgcagt tgcaacagct gggcaagtta atatgattga
5501 tccatggata ttcaacaatt ttgtccaggc cccccagggt gaatttacca
5551 tttctccaaa taataccccc ggtgatattt tatttgattt acaattgggc
5601 ccccacttga atcctttctt agctcattta tcacagatgt acaatggatg
5651 ggttggcaat atgcgggtcc gcatattgct ggcaggcaat gccttcacag
5701 ctggtaaggt aatcatatgt tgtgtccccc ctggctttga tgctagaata
5751 cttactattg ctcaagctac cctatttcct cacttgattg ctgatgttag
5801 gactcttgaa ccagtagaat tacctctcga ggatgtacgc aatgtcctct
5851 accacaatag cagccagcca cagccaacca tgcgactggt ggctatgcta
5901 tataccccat tgcgcacagg cggtgggtct ggaggcactg atgcttttgt
5951 ggttgctggg agagttctga catgccccgc accagacttt agttttctgt
6001 tccttgttcc tccctctgta gagcaaaaga ctagggtctt tagtgtcccc
6051 aatataccac tcaaagatct ctcaaattcc cgagtgccaa ccttgatcca
6101 gggcatgttt gtttctcctg atgtcaatca atcggtgcag ttccaaaatg
6151 ggcgatgtca aattgatggt cagttgcaag gtaccacccc agtatccctc
6201 agccaattat gtaagatcag aggtaggact tccagtaata ccagagtgct
6251 taaccttagt gaggttgacg ggacaccttt tgtaccactt gagtcccctg
6301 cacctgtagg ttttccagac ataggcgggt gtgattggca tgttggtttc
6351 acttttgagg cacgagacca ggacccctct cagaatgtga cctttgcaac
6401 caatgattct agctttgtac catatcttgg cagtatttca ccccacaatg
6451 gtgatgggtt ccatagtggt gacatcatag gtagtttgga ttggatctca
6501 gctccatcgg atggctccgc acttgatgta tggtctatac caaagtatgg
6551 atcatctctt ccagatgtca cccatctggc ccctgcagtt tttccccctg
6601 gctttggtga ggttatcctt tactttcact ctaaatttcc tggttctggc
6651 cccactgata aacttagggt tccatgtttg ataccacaag agtttataac
6701 acatttctgt aatgagcaag cacccatagc gggggaggct gccctccttc
6751 actatgtgga ccctgacaca ggtaggaact taggggaatt caagctttat
6801 ccagatggct ttatgacatg tgtgcctaac agcatcagca gtggtcccca
6851 gactctgcca atcaatggtg tgtttgtatt tgtgtcctgg gtatccagat
6901 tttaccaact taagcctgtg ggaacggcct cagcggccag gaggcttggt
6951 cttcggcgca tataatggct caagccatca taggtgccat agcagcttct
7001 gctgccggaa gcatactcgg tgctggcata caagctggtg ctgaggcagg
7051 actccaagcc caacggtatc aacaggatct ccaactacaa cagaatactt
7101 tccaacatga tagggaaatg atagggtacc aggtgcaggc cagtaatgcc
7151 ctattggcta agaatctcaa cactagatac actctactgc aggcaggggg
7201 tttgtctagt gcggatgcag ctagggctgt tgcaggcgct cctgttactc
7251 gcatagtgga ttggaacgga acccgtgtgg cagcccccac atcgagcgcc
7301 actactttaa aatctggtgg gttcatgcct gttcctatac ctttaaccca
7351 gaaatctaaa caacctttaa tgactgggca agataatcct aactatgctg
7401 cttcttctat ttctagaact gcttcatggg tgcaatccca aaactctttg
7451 agatctatgc ccccttttca taatgatgct ctccggactg tgtgggtcac
7501 gccacctggt tcgtcttcta catcttctat gcagtctagt ttctatggtg
7551 tctttaatac agatagatta ccccttttcg caaataggag gtagggaa