Sequence of DPV St Croix River virus
Saint Croix river virus segment 1 putative RNA-dependent RNA polymerase VP1 gene, complete cds.
ACC No: AF133431
Dated: 2005-11-23 | Length: 4089 | CRC: 1184506550
ID AF133431 standard; genomic RNA; VRL; 4089 BP.
XX
AC AF133431;
XX
SV AF133431.1
XX
DT 28-NOV-2000 (Rel. 66, Created)
DT 23-NOV-2005 (Rel. 85, Last updated, Version 2)
XX
DE Saint Croix river virus segment 1 putative RNA-dependent RNA polymerase VP1
DE gene, complete cds.
XX
KW .
XX
OS Saint Croix river virus
OC Viruses; dsRNA viruses; Reoviridae; Orbivirus.
XX
RN [1]
RP 1-4089
RX PUBMED; 16171838.
RA Attoui H., Mohd Jaafar F., Belhouchet M., Biagini P., Cantaloube J.F.,
RA de Micco P., de Lamballerie X.;
RT "Expansion of family Reoviridae to include nine-segmented dsRNA viruses:
RT Isolation and characterization of a new virus designated aedes
RT pseudoscutellaris reovirus assigned to a proposed genus (Dinovernavirus)";
RL Virology 343(2):212-223(2005).
XX
RN [2]
RP 1-4089
RA Attoui H., Billoir F., De Micco P., De Lamballerie X.;
RT ;
RL Submitted (08-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL Virologie, Faculte de Medecine de Marseille, 27-Boulevard Jean Moulin,
RL Marseille 13005, France
XX
FH Key Location/Qualifiers
FH
FT source 1. .4089
FT /chromosome="segment 1"
FT /db_xref="taxon:104581"
FT /mol_type="genomic RNA"
FT /organism="Saint Croix river virus"
FT CDS 11. .4048
FT /codon_start=1
FT /db_xref="GOA:Q9DSP9"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="InterPro:IPR007097"
FT /db_xref="InterPro:IPR008723"
FT /db_xref="UniProtKB/TrEMBL:Q9DSP9"
FT /product="putative RNA-dependent RNA polymerase VP1"
FT /protein_id="AAG34363.1"
FT /translation="MAAALQRLQSARDRVATLMHGLPPFPHCARNFHIAHRFSERSAVA
FT YGGPVRSVRAGGQDRIHPSFETLQESKSNETQEARIPSDSPAFSSSLRRSPGDIVFGHP
FT VVVERTWEEISRDVPFNTKGKLALRIFLSSIQHPDTFQPEEEFLRHYRLIPDHPFTSFI
FT RFREGRESATFGDLPLRHWFHLLTSLANERRIAPLGLSLLKELIEHLGGPPIGQDTRSL
FT DHVENLTEYSGISLLVEEALTEALLEINLVDREREIGSLTLGSRKFPALQILHEHFLVC
FT LPHPKHINNRLRSSYSWFVKMFSVCHPNPIVLRSHAGSDMNSKNVTYQGFSRVVNTFGP
FT TLLQIKYLSHAKDLNLQAIREAVEYSNSLSDASLSLPSFTSFYTDMFTSEFNPTDEGQV
FT FSLSFLLQIQTMSGYGRAWVINRSENLEEMMHPASDNYIDKVCEYTQLYVFRSYEQAFA
FT NGFHPVRASEMYHSLTSLAKNTSAGMDVHFQVRKTFSRREAWRRVKSKQKSLALLHYGH
FT LFFTPDELRRTYNTPDSCQTKGARDVPVKPTREVYSIVMPTIAQQYLVTNPLNRYLSYA
FT ETSDSSEPFTRGTTHPSDTRVAGKVIIGALEATGSRVMDGSDVFRGTSDPSHLILALDM
FT SNFDKHMTPYNFRKGEIDGMVRALSRFDGDPAFDYGDGVFPAQMAKFAYADGKIVGSLW
FT NGNRRVYRARGPVPDELIDAKPKFRPPPGVFSVRSLSDVQLDEEGDVLVSVGDGSDLAT
FT IYTHLSGENSTLVANSLHNMAIGRVIQDVLFQRFGDDVTFVSEMYVGDDTLAYLHFRTP
FT SVSVVDEAISLVFQTVEKCGHVASPAKTTLCPLSTEKTQTHAKQGVYIPQDRMMVISSE
FT RKKTIESVSAFFSSLVQKYVTKVSRGFSHDLAVDILLFTSALIGYRKLKAVIADGGTFL
FT KRPLRGPTAGYSTIIVRDPICAFVPKEMGGFGLSPTAINLISTPELLVDLRRTNLHSWF
FT FEHLMPCLERPFYPMWDESHPDPSLIQIDVQARAFSKYVRATPATFLSQPNLRKAIDML
FT PLQRMGPYDLMHNMTKQAVLKDQSARSLLAPAYERDVFIGNLISLSPPRELLLSDSDGA
FT IHTLISLLYDILLTPLPPQRHYYPDITLSPIFKLQREAFGVRSSAAVQVSFMDKIDRIL
FT SRDSVMRGLITSEHILAIIQQLGLALPQDQYLFIFLLLNLDENVASSLASLVVDGKLRF
FT DHTLIARGGICGDEFSMSLDVLTHSFQQSSFSCSRMLTSGEQSCLLLAASQTSMLRATL
FT GLPRAHLDYQVHTGPQSRIFKALRVQLTEHMNRRRNRYAKKFFHDPEVRRTLAERSASL
FT RF"
XX
SQ Sequence 4089 BP; 926 A; 1148 C; 932 G; 1083 T; 0 other;
AF133431 Length: 4089 23-NOV-2005 Type: N Check: 7776 ..
1 gtaatgatcc atggctgccg ctctgcaacg gctgcagtca gcaagggatc
51 gggtcgccac gcttatgcat ggcctcccac cgttcccgca ctgtgcgagg
101 aacttccaca tcgcgcacag attctctgag cgttccgctg ttgcgtacgg
151 cggacccgtg agatctgttc gcgcgggtgg acaggatcga attcatcctt
201 ccttcgaaac acttcaagag tccaagtcaa atgagactca agaagcgcga
251 attccttcgg attctcctgc cttctcctct tcgcttcggc gttcacctgg
301 agacatcgtc ttcggacacc ctgtcgttgt cgaacggacg tgggaggaga
351 tctctcgaga tgtgcctttt aacacaaaag gtaagctcgc ccttcgtata
401 ttcctctctt ctattcaaca ccctgataca ttccagcctg aggaggagtt
451 cctccgacat tatcggctta ttccagatca ccctttcaca tcgtttatac
501 gcttccgaga gggaagggaa agcgccactt tcggggacct acccctcagg
551 cattggtttc acctcctcac ttctttagca aatgaaagac gcatagcacc
601 actaggtctt tcactgctta aagaactaat cgaacatctg ggtggtccac
651 ccatcggtca agatacacgt tctcttgatc acgtcgagaa tctcacggaa
701 tactcaggta tctcgctact cgtcgaagaa gcgttgactg aggccctcct
751 ggagataaac ctcgtcgata gagaaaggga gattggctct cttacgttgg
801 gaagcagaaa gtttcccgcg ctgcaaattc tacacgaaca ctttctcgtc
851 tgccttccac atccgaaaca tattaacaac agactcaggt cttcctattc
901 gtggttcgtg aaaatgttta gcgtctgtca tcccaacccc atcgttctgc
951 gctcgcacgc tggatcggac atgaattcga agaatgttac ttaccaaggg
1001 ttctcacggg tcgtcaacac gtttggaccc acgttgcttc agataaagta
1051 tctatctcat gcgaaggacc tcaacctcca ggcgattcgg gaggcggtcg
1101 aatattcaaa ctcactttcg gacgcttcac tttccctgcc ttcgttcacc
1151 tccttctata ctgacatgtt tacttctgag tttaacccga cggacgaggg
1201 acaggttttc tcgttatcct tccttttgca aattcagacg atgagtggct
1251 atggacgagc atgggtcatc aaccgttctg agaatctgga agaaatgatg
1301 catccagcct cagataacta cattgacaaa gtctgtgaat atacgcagct
1351 ctatgtcttt cgttcctatg aacaggcctt tgcgaatgga tttcacccgg
1401 tgcgcgcttc cgagatgtat cattccttga cctctctggc aaagaacacc
1451 tctgctggga tggatgtaca tttccaggtt cggaagacgt tttccagaag
1501 agaggcgtgg cgtcgcgtta aatctaagca gaagagtctt gcgctgttac
1551 actatggtca tctcttcttt actccagacg aactacgacg tacgtacaat
1601 acgccggatt cgtgccaaac gaaaggtgcg cgggatgtac ctgttaagcc
1651 cacgcgtgag gtatattcta ttgttatgcc tactatagct cagcagtacc
1701 tggtcacgaa tcccttgaat aggtacctat cttacgcgga aacttccgac
1751 tcttctgaac ccttcacacg aggtaccacc cacccgagtg atacgcgtgt
1801 ggcgggaaag gtcatcatcg gcgcgctcga agctacgggc tctcgcgtca
1851 tggatggatc ggatgtgttt cgtggcacct ccgacccttc tcatctcata
1901 ctggctctcg acatgtcaaa ctttgacaag cacatgacac cttacaactt
1951 tagaaagggt gagatcgacg gcatggtccg agccctatct cgctttgatg
2001 gagaccccgc ctttgactat ggcgatggcg ttttcccggc ccagatggct
2051 aagttcgcgt acgccgatgg caagattgtt ggatcgttat ggaacgggaa
2101 ccgtcgcgtg tacagggcca gaggccccgt accggatgag ctcattgacg
2151 cgaagcctaa atttcgtccg cctcctggag tcttttctgt tcgttccctc
2201 tccgatgttc agcttgacga ggaaggggac gttctagtct cggttggcga
2251 tggcagtgac ctcgccacca tctataccca tctctcaggc gagaattcta
2301 ctctcgtcgc aaactctcta cataacatgg ccattggccg cgttattcag
2351 gacgttcttt tccagaggtt cggtgacgac gtcacctttg tctctgagat
2401 gtacgtcgga gatgatactc tggcctatct acactttcgc actccatcgg
2451 tcagcgtggt cgatgaggct attagtctcg tcttccagac ggttgaaaaa
2501 tgtgggcacg ttgcttctcc ggcgaaaacg acattgtgtc cactttccac
2551 cgaaaagaca cagactcacg ccaagcaagg agtgtacatt ccccaggatc
2601 gaatgatggt tatatcttct gagagaaaga aaaccatcga gtcggtgtca
2651 gcctttttct cctctctcgt tcagaaatac gttactaagg tctctagagg
2701 tttctctcat gacctagctg tcgacatctt acttttcacc tccgcgctca
2751 tcggatatcg gaagctcaag gcggtaatcg ctgatggggg caccttcttg
2801 aaacgcccgt tgcgaggacc taccgcaggg tactctacca tcattgtcag
2851 agaccctatc tgtgctttcg ttcctaaaga gatgggcggc tttggattat
2901 cgcccaccgc cattaaccta atctctactc cggagcttct cgttgatctt
2951 cgtagaacca acctgcactc atggttcttc gagcacctca tgccatgtct
3001 ggagagacct ttctatccaa tgtgggacga gagtcacccc gacccttccc
3051 tcatacaaat agacgttcaa gcccgcgctt tctcgaaata tgtacgagct
3101 actccagcaa cttttctctc tcagcccaac ctgaggaaag ccattgacat
3151 gttgcctctg cagcgaatgg ggccgtatga tctaatgcac aacatgacta
3201 aacaagcggt cctcaaagat cagagtgcgc gctcccttct cgcacctgcg
3251 tatgagagag atgtattcat cggaaatctt atctctctct ctcccccgcg
3301 agaattactg ctatcagata gcgacggagc gattcacact ctgatctctc
3351 ttctctatga cattttgctc acccctctgc ctccccaacg tcactactat
3401 cctgacatca ccctttcgcc catcttcaaa ctgcaacgtg aggctttcgg
3451 ggtgcggtcc tccgcagccg tgcaagtgtc ctttatggac aaaatcgatc
3501 gcattctttc gagagatagt gtgatgaggg gacttatcac ctcggaacac
3551 attctcgcta ttattcagca acttggcctc gcgctccccc aggatcaata
3601 tctcttcatc ttcttgctcc tcaacctgga cgaaaatgtt gcatcttccc
3651 tcgcctcttt ggtagttgat ggcaaactga gatttgacca tactctcatc
3701 gcacgaggcg gtatatgtgg agacgagttc tccatgtctc tcgacgttct
3751 cacacattct tttcagcaga gttccttcag ttgctctcga atgctcactt
3801 ccggggaaca gagttgttta cttctcgcag catctcagac gtccatgctg
3851 cgagcgacgc tcggtttgcc ccgtgcgcat cttgactacc aagtacatac
3901 tgggcctcag tcaagaatct ttaaagcgct gcgtgtgcag ctaacagaac
3951 acatgaacag acgccgaaat cgatacgcaa aaaagttctt ccatgatcct
4001 gaagttcgtc gcacactagc ggagcgtagt gcgagccttc ggttttaggc
4051 ccgatacctc cgttctgacc gtggctggga tttacctac