Sequence of DPV Tomato leaf curl Philippines virus
Tomato leaf curl Philippines virus - [LB] isolate Los Banos 1 segment A, complete sequence.
ACC No: AF136222
Dated: 2006-01-04 | Length: 2744 | CRC: 1516149430
ID AF136222 standard; circular genomic DNA; VRL; 2744 BP.
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AC AF136222;
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SV AF136222.2
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DT 07-JUN-1999 (Rel. 59, Created)
DT 04-JAN-2006 (Rel. 86, Last updated, Version 8)
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DE Tomato leaf curl Philippines virus - [LB] isolate Los Banos 1 segment A,
DE complete sequence.
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KW .
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OS Tomato leaf curl Philippines virus - [LB]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-539, 1942-2744
RA Shih S.L., Dolores L.M., Nakhla M.K., Maxwell D.P., Green S.K.;
RT "A new geminivirus associated with a leaf curl disease of tomato in the
RT Philippines";
RL Zhi Wu Bao Hu Xue Hui Hui Kan 39(4):394-395(1997).
XX
RN [2]
RP 1-539, 1942-2744
RA Zeidan M., Green S.K., Maxwell D.P., Nakhla M.K., Czosnek H.;
RT "Molecular analysis of whitefly-transmitted tomato geminiviruses from
RT Southeast and East Asia";
RL Trop. Agric. Res. 1(2):107-115(1998).
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RN [3]
RP 1-539, 1942-2744
RA Shih S.L., Dolores L.M., Nakhla M.K., Maxwell D.P., Green S.K.;
RT ;
RL Submitted (19-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Wisconsin-Madison, 1630 Linden Dr., Madison,
RL WI 53706-1598, USA
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RN [4]
RC Sequence update by submitter
RP 1-2744
RA Shih S.L., Dolores L.M., Nakhla M.K., Maxwell D.P., Green S.K.;
RT ;
RL Submitted (29-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, Asian Vegetable Research and Development Center, P.O. Box
RL 42, Shanhua, Tainan, Taiwan, Republic of China
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CC On Jan 3, 2006 this sequence version replaced gi:5002130.
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FH Key Location/Qualifiers
FH
FT source 1. .2744
FT /country="Philippines:Los Banos"
FT /db_xref="taxon:270142"
FT /mol_type="genomic DNA"
FT /organism="Tomato leaf curl Philippines virus - [LB]"
FT /isolate="Los Banos 1"
FT /specific_host="tomato plant"
FT /segment="A"
FT /collection_date="Jun-1995"
FT gene 143. .496
FT /gene="V2"
FT CDS 143. .496
FT /codon_start=1
FT /db_xref="GOA:Q9WPL9"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q9WPL9"
FT /product="precoat protein"
FT /gene="V2"
FT /protein_id="AAD37322.1"
FT /translation="MWDPLVHPFPESLHGFRCMLANQISSELNRKYSPDTVGHEFWKDF
FT ICIWRSKNYAEAFNRYSNVVANVDNTSKAQLRESVQSPCFCPHCPRHVLQAKVMDLQAH
FT VSQAQDVQNVSKP"
FT gene 258. .1079
FT /gene="V1"
FT CDS 258. .1079
FT /codon_start=1
FT /db_xref="GOA:Q9WPL8"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q9WPL8"
FT /product="coat protein"
FT /gene="V1"
FT /protein_id="AAD37323.2"
FT /translation="MSFGKILYAYGEVRIMPKRSIDTVTSLPMSITRRRLNYGSQYSLP
FT ASVPTVPDMSYKRRSWTYRPMFRKPKMYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVG
FT KVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPY
FT GTPQDFGQVFNMYDNEPSTATVKNDNRDRYQVLRKFQAIVTGGQYASKEQAIVKRFMKI
FT NNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1076. .1477)
FT /gene="C3"
FT CDS complement(1076. .1477)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /protein_id="ABC54994.1"
FT /translation="MDSRTGEPITAAQGENGVYTWTITNPLYFQISQHDKMPFLKNHDI
FT ITVQIQFNHNLRKALGIHQCFLICQIWTHLHPQTWRFLRVFKYQCMKYLYSLGVISINN
FT VIRAIKHVLFDVIKTIDVQISHIIKFSIY"
FT gene complement(1218. .1625)
FT /gene="C2"
FT CDS complement(1218. .1625)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /protein_id="ABC54995.1"
FT /translation="MQNSSPSHNHCTQVPIKVQHKIAKRRPIRRRRIDLPCGCSYYLGL
FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFPDIPTRQDAVLEKPRHHNSTDTVQPQ
FT PEESVGNSSMFSDLPNLDSFTSSDLAFLKSI"
FT gene complement(1531. .2613)
FT /gene="C1"
FT CDS complement(1531. .2613)
FT /codon_start=1
FT /db_xref="GOA:Q9WPM0"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q9WPM0"
FT /product="replication-associated protein"
FT /gene="C1"
FT /protein_id="AAD37321.2"
FT /translation="MAPPRPFKINAKNYFLTYPQCSLTKEDALSQLQNLNTPTNKKFIK
FT ICRELHEDGSPHLHVLIQFERKYQCQIQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQVDGRSARGGQQSANDAYAKAINTGSKSEALNVIRELAPKDFVLQFH
FT NLSANLDRIFAPPLEVFVSPFPSSSFNQVPKELEEWVSENVRDAAARPWRPKSIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDSWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSPLKDWALKNAEFITIAQPL
FT YSSTHQSPTQNSQAATNTQA"
FT gene complement(2166. .2456)
FT /gene="C4"
FT CDS complement(2166. .2456)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="ABC54996.1"
FT /translation="MGALISTCLSNSRENTSARSSDSSTWYPQPGQHISIRTFRELNPA
FT PTSSPISTRTETPSNGESFRSTEDLQEGDNNQPMTLTPKRLTQEVSQRLLM"
XX
SQ Sequence 2744 BP; 732 A; 535 C; 604 G; 873 T; 0 other;
af136222 Length: 2744 04-JAN-2006 Type: N Check: 5899 ..
1 accgtgggcc gcgcaaattt tttttatatt gggcctaatg gtccttttgg
51 atgtcgggct cgaccaatgg aaacgttccc tcatcgctta tttattaatt
101 ggtcccctat ttaacccttg gtggctacgt ttttctttaa aaatgtggga
151 tcctctggta catccctttc ctgaaagctt acacggcttc agatgtatgc
201 ttgccaatca aatatcttca gagcttaaca gaaaatattc tccagacact
251 gttgggcatg agttttggaa agattttata tgcatatggc gaagtaagaa
301 ttatgccgaa gcgttcaata gatacagtaa cgtcgttgcc aatgtcgata
351 acacgtcgaa ggctcaacta cgggagtcag tacagtctcc ctgcttctgt
401 ccccactgtc ccagacatgt cttacaagcg aaggtcatgg acttacaggc
451 ccatgtttcg caagcccaag atgtacagaa tgtatcgaag ccgtgatgtt
501 cctcgtgggt gtgaaggccc atgtaaggtt cagtcttatg aacagcgtca
551 tgatatagcc catgtgggta aggtcatatg tgtgtctgat gttactcgtg
601 gtaatgggct cacacatcgt gttggaaaga ggttttgtgt aaagtctgtg
651 tatgtgttgg ggaaggtctg gatggatgag aacatcaaga ctaagaatca
701 cactaacact gtcatgtttt ttttagttcg tgataggaga ccctatggga
751 ctccccagga ttttggtcag gtttttaaca tgtatgataa tgagcctagt
801 actgcaactg taaaaaatga taatagagat cgatatcaag ttcttcgtaa
851 atttcaagct atcgtgactg gaggtcagta tgcaagcaag gagcaagcaa
901 tagtcaagag gttcatgaag attaacaacc atgttactta caatcatcaa
951 gaggctgcga agtatgataa ccatacagag aacgctttac tgttgtatat
1001 ggcttgtact catgctagta atccagtgta tgctacgttg aaaatcagaa
1051 tctattttta tgattctgtt cagaattaat aaatactgaa ttttattata
1101 tgagaaattt gtacatctat tgttttaatt acatcgaaca gtacatgctt
1151 gatagcccta attacattgt ttatgctaat aactcctaaa ctatacaaat
1201 acttcataca ctgatattta aatactctta agaaacgcca agtctgagga
1251 tgtaaatgag tccagatttg gcagatcaga aaacattgat gaattcccaa
1301 cgctttcctc aggttgtggt tgaactgtat ctgtactgtt atgatgtcgt
1351 ggtttttcaa gaacggcatc ttgtcgtgtt gggatatctg gaaataaagg
1401 ggatttgtta tcgtccaggt atatacgcca ttctctccct gagctgcagt
1451 gatgggttcc cctgtgcgag aatccatacg aagcacaatt aagtcctaaa
1501 tagtaagagc agccgcaagg aagatcaatt ctacgcctgc gtattggtcg
1551 ccgcttggct attttgtgtt ggactttgat gggtacttga gtacaatggt
1601 tgtgcgatgg tgatgaattc tgcattcttt agcgcccagt ctttgagtgg
1651 agaattctta tcctcatcca agtactcttt atacgacgac gtaggtcctg
1701 gattgcatag gaagattgtt gggattccac ctttaatttg aattggtttc
1751 ccgtacttcg tgttgctttg ccagtctctt tgggccccca taaactcttt
1801 aaaatgcttt agatagtggg ggtctacgtc atcaatgacg ttgtaccacg
1851 aatcattatt gtagaccttt ggactcaggt ccagatgtcc acataaataa
1901 ttatgtggtc ccagtgatct agcccacatc gtcttccccg ttcgactatc
1951 gccctctagt acaatacttt taggtctcca aggccgcgca gcggcatccc
2001 ttacattctc ggacacccat tcttcaagtt cttttggaac ttgattgaaa
2051 gatgaagaag gaaaaggact aacaaaaacc tctaaaggag gtgcaaaaat
2101 cctatctaaa tttgcactta aattatgaaa ctgtaaaaca aaatcttttg
2151 gtgctaattc cctaattaca ttaagagcct ctgacttact tcctgtgtta
2201 atcgctttgg cgtaagcgtc attggctgat tgttgtcccc ctcttgcaga
2251 tcttccgtcg acctgaaact ctccccattc gagggtgtct ccgtccttgt
2301 cgatatagga cttgacgtcg gagctggatt tagctccctg aatgttcgga
2351 tggaaatgtg ctgacctggt tggggatacc aagtcgaaga atcgctggat
2401 ctggcactgg tattttctct cgaattggat aagcacgtgg agatgagggc
2451 tcccatcttc gtgtaattct cgacagatct ttatgaattt tttatttgtt
2501 ggtgtattta ggttttgtaa ttgggaaagt gcatcttctt tagtaagaga
2551 gcactgtgga taagtgagga aataattttt ggcatttatt ttaaatggtc
2601 ttggaggagc cattgacttg gtcaatcggt gtctctacta atgctctagc
2651 aatcggtgta ttggagtcct atatatagtt agacaccaaa tggcataatt
2701 gtaatttttt tatgggcttc caagcggcca acgactataa tatt