Sequence of DPV Aquareovirus C

Grass carp hemorrhagic virus segment M6 outer capsid protein VP5 gene, complete cds.

ACC No: AF239175

Dated: 2001-09-24 | Length: 2039 | CRC: -597820910

                !!NA_SEQUENCE 1.0
ID   AF239175   standard; RNA; VRL; 2039 BP.
XX
AC   AF239175;
XX
SV   AF239175.1
XX
DT   02-OCT-2000 (Rel. 65, Created)
DT   24-SEP-2001 (Rel. 69, Last updated, Version 2)
XX
DE   Grass carp hemorrhagic virus segment M6 outer capsid protein VP5 gene,
DE   complete cds.
XX
KW   .
XX
OS   Grass carp hemorrhagic virus
OC   Viruses; dsRNA viruses; Reoviridae; Aquareovirus;
OC   Grass carp hemorrhagic virus group.
XX
RN   [1]
RP   1-2039
RX   MEDLINE; 21440427.
RX   PUBMED; 11556714.
RA   Qiu T., Lu R.H., Zhang J., Zhu Z.Y.;
RT   "Molecular characterization and expression of the M6 gene of grass carp
RT   hemorrhage virus (GCHV), an aquareovirus";
RL   Arch. Virol. 146(7):1391-1397(2001).
XX
RN   [2]
RP   1-2039
RA   Qiu T., Lu R., Zhang J., Zhu Z.;
RT   ;
RL   Submitted (19-JUL-2000) to the EMBL/GenBank/DDBJ databases.
RL   Department of Fish Genetics and Breeding, Institute of Hydrobiology,
RL   Chinese Academy of Sciences, Luo Jia Shan, Wuhan, Hubei 430072, China
XX
DR   SPTREMBL; Q9E6U3; Q9E6U3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2039
FT                   /db_xref="taxon:128986"
FT                   /note="segment: M6"
FT                   /organism="Grass carp hemorrhagic virus"
FT                   /strain="873"
FT   CDS             31. .1977
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9E6U3"
FT                   /product="outer capsid protein VP5"
FT                   /protein_id="AAG17823.1"
FT                   /translation="MWNVQTSVNTYNITGDGNSFTPTSDMTSTAAPAIDLKPGVLNPTG
FT                   KLWRPVGTSVATIDSLAIVSDRFGQYSFVNEGMRETFSKALFDINMWQPLFQATKTGCG
FT                   PIVLSSFTTTTSGYVGATAGDALDNPVTNGVFISTVQIMNLQRTIAARMRDVALWQKHL
FT                   DTAMTMLTPDISAGSASCNWKSLLAFAKDILPLDNLCLTYPNEFYNVAIHRYPALKPGN
FT                   PDTKLPDAQAHPLGEVAGAFNAATSEVGSLVGSSSTLSQAISTMAGKDLDLIEADTPLP
FT                   VSVFTPSLAPRSYRPAFIKPEDAKWIAEFNNSSLIRKTLTYSGATYTVQLGPGPTRVID
FT                   MNAMIDSVLTLDVSGTILPYDTSPDLSTSVPAFVLIQTSVPIQQVTTAANITAITVVSA
FT                   AGASAINLAINVRGQPRFNMLHLQATFERETITGIPYIYGLGTFLIPSPTSSSNFSNPT
FT                   LMDGLLTVTPVLLRETTYKGEVVDAIVPATVMANQTSEEVASALANDAIVLVSNHLNKL
FT                   ANVVGDAIPVASKTDDSATSAIVSRLAVQHKLSQVGQASPTPPDYPLLWRRAKRAASMF
FT                   VSNPSLALQVGIPVLTQSGMLSALTSGVGTALRTGSLGKGVTDASEKLRARQSLTVAKQ
FT                   AFFDQIGNLWPGK"
XX
SQ   Sequence 2039 BP; 445 A; 669 C; 441 G; 484 T; 0 other;

AF239175  Length: 2039  December 21, 2001 14:58  Type: N  Check: 40  ..

       1  gttatttcga cacttcgcac tctctctaca atgtggaacg ttcaaacctc
      51  cgtcaacact tacaatatta ctggggatgg taattcattt acccccacct
     101  ctgacatgac atccaccgcc gccccggcca ttgacctcaa acctggggtt
     151  ctcaatccta ccggtaagct atggcgaccc gtcggtacct ctgttgctac
     201  catcgactca cttgccatcg ttagcgatcg ttttggtcag tattcatttg
     251  tcaatgaagg catgcgagag accttttcaa aagcgctctt cgacatcaac
     301  atgtggcaac ctttattcca agcgacaaag actggctgcg gaccgattgt
     351  actctcctcc ttcacaacca ccacctccgg ttatgttggc gccactgccg
     401  gtgatgccct tgacaaccct gtaacgaatg gcgttttcat cagtactgtg
     451  caaatcatga accttcagcg gaccatcgct gcccgcatgc gtgacgtcgc
     501  tctctggcag aaacacttag acaccgccat gaccatgcta acacctgaca
     551  tttctgccgg tagcgcctcc tgcaactgga agagcttgct cgcttttgcg
     601  aaggatatcc tccccctcga caacctgtgc ctcacctacc caaatgagtt
     651  ctacaacgtt gccatccacc gttatcccgc actcaagcct ggtaacccag
     701  acaccaagct tcccgatgcc caggctcatc cgctgggaga agtagccggt
     751  gcgttcaatg ccgccacctc tgaagttggg agtctcgttg gttccagctc
     801  caccctctca caggccatct ccaccatggc tggcaaagac ctcgatctaa
     851  ttgaagccga cactccgctc cccgtgagcg tatttactcc atctctcgcc
     901  cctcgttctt atcgacccgc cttcattaaa cctgaggatg ctaagtggat
     951  cgcggaattc aataactcat ccctcatacg taagactctt acctactcgg
    1001  gtgcaactta caccgttcaa ctcggccctg gtccaactcg cgtcattgat
    1051  atgaatgcga tgatcgactc cgtgttgacc ctggatgtga gcggtaccat
    1101  cctcccatat gacacaagcc ctgatctgtc tacttcagtc ccggctttcg
    1151  tcctcatcca gacctcagta ccaattcaac aagtcactac cgctgctaac
    1201  atcacagcca tcaccgtcgt atccgccgct ggcgcttccg ccatcaatct
    1251  cgctatcaat gtacgcggcc agccccgctt caacatgctc cacctgcaag
    1301  ccacctttga gcgcgagaca atcaccggga tcccgtatat ctatggcttg
    1351  ggcacattcc tcatcccatc acccacatcc tcctccaatt tctccaaccc
    1401  cacgctgatg gacggccttc tcactgtcac ccccgtactg ctacgtgaga
    1451  cgacatacaa gggcgaagtc gttgacgcta tcgtaccagc taccgtcatg
    1501  gccaaccaaa cgtctgagga ggtcgcctct gccttagcca acgacgcgat
    1551  cgtgttagtg tcgaatcatc tcaacaagtt ggccaatgtc gtaggagacg
    1601  cgattcccgt cgcctcaaaa acggatgatt ccgcgactag cgccatcgtc
    1651  agtcgactcg ccgtccagca caagctgtca caggtaggcc aagcctcacc
    1701  cactcccccc gattatccac ttctgtggcg ccgtgccaag cgtgccgcgt
    1751  ctatgttcgt ctccaacccc tccctggcct tgcaggtagg tatccctgtg
    1801  ttaactcaat cgggtatgct ttccgcccta acgtctggcg taggcacggc
    1851  tttacgtact ggtagcttgg gcaaaggtgt aaccgatgcg tcagaaaaac
    1901  tacgtgcacg tcagagtttg acggttgcga agcaagcgtt cttcgaccag
    1951  atagggaact tgtggcccgg caagtgaggg gtgggttgac aacccccttc
    2001  catgcccgcg tgaacggcgg gaagtgtcgt actttcatc