Sequence of DPV Pigeon circovirus
Columbid circovirus (CoCV), complete genome.
ACC No: AF252610
Dated: 2001-01-18 | Length: 2037 | CRC: 1274374322
!!NA_SEQUENCE 1.0 ID AF252610 standard; circular DNA; VRL; 2037 BP. XX AC AF252610; XX SV AF252610.1 XX DT 09-JUN-2000 (Rel. 64, Created) DT 18-JAN-2001 (Rel. 66, Last updated, Version 7) XX DE Columbid circovirus (CoCV), complete genome. XX KW . XX OS columbid circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus. XX RN [1] RP 1-2037 RA Mankertz A., Hattermann K., Ehlers B., Soike D.; RT "Cloning and sequencing of columbid circovirus (CoCV), a new circovirus RT from pigeons"; RL Arch. Virol. 145:2469-2479(2000). XX RN [2] RP 1-2037 RA Mankertz A., Hattermann K., Ehlers B., Soike D.; RT ; RL Submitted (05-APR-2000) to the EMBL/GenBank/DDBJ databases. RL P24, Robert Koch Institut, Nordufer 20, Berlin 13353, Germany XX DR SPTREMBL; Q9IG41; Q9IG41. DR SPTREMBL; Q9IG42; Q9IG42. DR SPTREMBL; Q9IG43; Q9IG43. DR SPTREMBL; Q9IG44; Q9IG44. DR SPTREMBL; Q9IG45; Q9IG45. XX FH Key Location/Qualifiers FH FT source 1. .2037 FT /db_xref="taxon:126070" FT /organism="columbid circovirus" FT /specific_host="pigeon" FT repeat_region 17. .32 FT /note="potential binding site for replicase" FT /rpt_type=INVERTED FT repeat_region complement(36. .51) FT /note="potential binding site for replicase" FT /rpt_type=INVERTED FT CDS 41. .994 FT /codon_start=1 FT /db_xref="SPTREMBL:Q9IG45" FT /note="Rep; 36.3 kDa" FT /gene="rep" FT /product="replicase" FT /protein_id="AAF74196.1" FT /translation="MAPCKPGSNPPKGRVSAAEGGARREATRRPPREAAAKRWCFTLNN FT PTEEEIKSLETWLVSDFHYAIVGKEVGEQGTPHLQGFVHLKQKKRLPQLKQLFKRAHWE FT KARGSDEDNEKYCSKEGNVLLTLGIPAKGNRSDLSEAVAAVKAGRAMTEVARDFSEIYV FT KYGRGLRDLKLLIGQQPRDFKTEVIVITGPPGCGKSRWAADYPGSKFYKMKGEWWDGYD FT HQEVVIIDDFYGWLPFCELLRVTDRYPHKVPVKGAFVEFTSRVIIVTSNSPPDAWYSEE FT RCCVQALFRRINKWLVWNHDKFEDAPDCMKKYPINY" FT repeat_region complement(43. .48) FT /note="potential binding site for replicase" FT /rpt_type=DIRECT FT CDS complement(410. .790) FT /codon_start=1 FT /db_xref="SPTREMBL:Q9IG44" FT /evidence=NOT_EXPERIMENTAL FT /note="ORFC2; similar to 13.7 kDa BFDV ORF3 protein" FT /product="unknown" FT /protein_id="AAF74198.1" FT /translation="MRVPVGHTQQLTEGQPAVEVINDDYFLVVVPVPPFTLHLVEFTSG FT VVSCPTALPATGRARDDDDFRFEVTGLLTNQQLQVAQATPIFDVYLTEVSRDLGHCSSG FT FHRGNSLAEIAPVSLRRNAQGK" FT CDS complement(736. .984) FT /codon_start=1 FT /db_xref="SPTREMBL:Q9IG43" FT /evidence=NOT_EXPERIMENTAL FT /note="ORFC4; 8.9 kDa; similar to large polymerase protein FT of newcastle disease virus CAB51327" FT /product="unknown" FT /protein_id="AAF74200.1" FT /translation="MGYFFIQSGASSNLSWFQTSHLLIRRKSAWTQHLSSLYQASGGLL FT LVTIITRDVNSTKAPFTGTLCGYRSVTRSSSQKGSQP" FT CDS complement(1166. .1987) FT /codon_start=1 FT /db_xref="SPTREMBL:Q9IG42" FT /note="Cap; 31.9 kDa; protein translation starts with an FT alternative start codon" FT /transl_except=(pos:1985. .1987,aa:Met) FT /gene="cap" FT /product="capsid protein" FT /protein_id="AAF74197.1" FT /translation="MRRRRFRRRRAPIRRRRIRRRRTRLSRNIRGHRRSSRIYYFRLRR FT KDKITLTQATNDFKFGTGIFTFKLADVLTVGLNAPTLKVPFEDYQIALVKVEMRPLGVD FT ITTWKGFGHTVPMYDARLKTFQGQVDLGDDPLMDFDGARKWDLRKGFKRLIRPRPQLTI FT ADLATANQSAATWFSGRNQWIPLQVSGNSLFPQKVNHYGLAFSYLQPQPDPMYYECEVT FT FYVKFRQFAWTTLNVPPTPNIEGMELMHICNGDCNQCFADALDPDSAVDSE" FT repeat_region complement(1562. .1567) FT /note="potential binding site for replicase" FT /rpt_type=DIRECT FT rep_origin join(<2009. .2037,1. .>26) FT /note="putative stem loop structure required for FT replication" FT repeat_region complement(2014. .2019) FT /note="potential binding site for replicase" FT /rpt_type=DIRECT FT misc_feature join(2031. .2037,1. .2) FT /note="sequence conserved in circoviridae, geminiviridae FT and nanoviridae" FT CDS join(complement(1. .292),complement(2036. .2037)) FT /codon_start=1 FT /db_xref="SPTREMBL:Q9IG41" FT /evidence=NOT_EXPERIMENTAL FT /note="ORFC3; 10 kDa" FT /product="unknown" FT /protein_id="AAF74199.1" FT /translation="MHKTLQMRGPLLPDLLPHNGIVEVTHQPRFQALNLFFSGVVQSEA FT PSLCCSLAGGSTGRFATGAAFGGGHAALGGVAAWFARSHIAARCGSVAPSRG" XX SQ Sequence 2037 BP; 464 A; 545 C; 588 G; 440 T; 0 other; AF252610 Length: 2037 September 18, 2002 10:52 Type: N Check: 9851 .. 1 acccgcgact tggagccacg gagccacatc gcgcagcgat atggctccgt 51 gcaaaccagg cagcaacccc cccaagggcc gcgtgtccgc cgccgaaggc 101 ggcgcccgtc gcgaagcgac ccgtcgaccc ccccgcgagg ctgcagcaaa 151 gcgatggtgc ttcactttga acaaccccac tgaagaagag attaagagcc 201 tggaaacgtg gctggtgagt gacttccact atgccattgt ggggaaggag 251 gtcggggagc aggggacccc gcatctgcaa ggttttgtgc atctaaagca 301 gaagaagcgg ttgccgcaac ttaagcagct ttttaagcgt gcgcattggg 351 agaaagcgcg cggcagtgat gaggacaatg agaagtactg ctctaaagag 401 ggtaatgtgc tacttaccct gggcattcct gcgaagggaa accggagcga 451 tctcagcgag gctgttgccg cggtgaaagc cggaagagca atgaccgagg 501 tcgcgcgaga cttcagtgag atatacgtca aatatgggcg tggcttgcgc 551 gacctgaagc tgctgattgg tcagcagccc cgtgacttca aaacggaagt 601 catcgtcatc acgggcccgc ccggttgcgg gaagagccgt tgggcagctg 651 actaccccgg aagtaaattc tacaagatga agggtgaatg gtgggacggg 701 tacgaccacc aggaagtagt catcattgat gacttctacg gctggctgcc 751 cttctgtgag ctgctgcgtg tgaccgaccg gtacccgcat aaggtgcccg 801 tgaaaggggc ctttgtggag ttcacgtctc gcgtgataat agtgaccagc 851 aacagtcccc ccgatgcctg gtacagcgag gaaaggtgct gtgtccaggc 901 gctcttccgg cggatcaaca agtggctggt ctggaaccac gacaagttcg 951 aagatgctcc ggattgtatg aagaagtacc ccatcaacta ttagcccccc 1001 acccccatga cactagtaaa gggacccaag ccagccgagc cggccgcgcc 1051 cgcgagcgaa gcgagcggcc gcgcggcctg gcgagtctgg cgggtccgga 1101 gcggagcgac cgcgaatgcg ggagcgaagc gactacactc gaaaatgaat 1151 ttgcaataaa aggctttatt cagaatccac agctgagtct gggtctaatg 1201 catctgcaaa acactggtta caatccccat tacaaatatg catcaattcc 1251 atgccctcaa tgttgggggt cggggggaca ttgagggtgg tccaagcaaa 1301 ctgcctgaac ttgacataga aggtcacttc acattcataa tacatggggt 1351 ctggttgggg ttgcaggtaa ctgaatgcga gcccatagtg attaactttc 1401 tggggaaaca agctgttgcc tgatacctgc agtggtatcc actggtttct 1451 ccctgagaac catgttgctg ccgactggtt tgccgtagcc agatccgcga 1501 ttgttagttg aggtcgtggc cttatgaggc gtttaaaccc ctttctcaaa 1551 tcccattttc tggctccgtc aaagtccatg agggggtcat ctcccaagtc 1601 cacctgccct tgaaaggttt tcagcctggc atcatacatc gggacagtgt 1651 gcccgaatcc tttccatgtc gtgatgtcaa cgcctagtgg tctcatttcc 1701 accttcacta acgcaatctg atagtcctca aatgggactt tcagcgttgg 1751 cgcgttaaga cccactgtga gtacatccgc gagtttgaat gtaaatatgc 1801 cagtaccgaa tttgaaatca ttggtcgcct gtgtcaatgt gatcttgtcc 1851 ttgcgacgta ggcggaagta gtaaatacgg ctactcctcc tgtggccacg 1901 tatgttccgg gagaggcgtg tccttcgtct cctgatccgg cgtcggcgaa 1951 tgggcgccct cctccggcgg aatctccgcc tccttatctg cggaagtgcg 2001 acgtcacttc cgtggctcca agtcgcggct tagtatt