Sequence of DPV Pigeon circovirus
Columbid circovirus (CoCV), complete genome.
ACC No: AF252610
Dated: 2001-01-18 | Length: 2037 | CRC: 1274374322
!!NA_SEQUENCE 1.0
ID AF252610 standard; circular DNA; VRL; 2037 BP.
XX
AC AF252610;
XX
SV AF252610.1
XX
DT 09-JUN-2000 (Rel. 64, Created)
DT 18-JAN-2001 (Rel. 66, Last updated, Version 7)
XX
DE Columbid circovirus (CoCV), complete genome.
XX
KW .
XX
OS columbid circovirus
OC Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN [1]
RP 1-2037
RA Mankertz A., Hattermann K., Ehlers B., Soike D.;
RT "Cloning and sequencing of columbid circovirus (CoCV), a new circovirus
RT from pigeons";
RL Arch. Virol. 145:2469-2479(2000).
XX
RN [2]
RP 1-2037
RA Mankertz A., Hattermann K., Ehlers B., Soike D.;
RT ;
RL Submitted (05-APR-2000) to the EMBL/GenBank/DDBJ databases.
RL P24, Robert Koch Institut, Nordufer 20, Berlin 13353, Germany
XX
DR SPTREMBL; Q9IG41; Q9IG41.
DR SPTREMBL; Q9IG42; Q9IG42.
DR SPTREMBL; Q9IG43; Q9IG43.
DR SPTREMBL; Q9IG44; Q9IG44.
DR SPTREMBL; Q9IG45; Q9IG45.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2037
FT /db_xref="taxon:126070"
FT /organism="columbid circovirus"
FT /specific_host="pigeon"
FT repeat_region 17. .32
FT /note="potential binding site for replicase"
FT /rpt_type=INVERTED
FT repeat_region complement(36. .51)
FT /note="potential binding site for replicase"
FT /rpt_type=INVERTED
FT CDS 41. .994
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IG45"
FT /note="Rep; 36.3 kDa"
FT /gene="rep"
FT /product="replicase"
FT /protein_id="AAF74196.1"
FT /translation="MAPCKPGSNPPKGRVSAAEGGARREATRRPPREAAAKRWCFTLNN
FT PTEEEIKSLETWLVSDFHYAIVGKEVGEQGTPHLQGFVHLKQKKRLPQLKQLFKRAHWE
FT KARGSDEDNEKYCSKEGNVLLTLGIPAKGNRSDLSEAVAAVKAGRAMTEVARDFSEIYV
FT KYGRGLRDLKLLIGQQPRDFKTEVIVITGPPGCGKSRWAADYPGSKFYKMKGEWWDGYD
FT HQEVVIIDDFYGWLPFCELLRVTDRYPHKVPVKGAFVEFTSRVIIVTSNSPPDAWYSEE
FT RCCVQALFRRINKWLVWNHDKFEDAPDCMKKYPINY"
FT repeat_region complement(43. .48)
FT /note="potential binding site for replicase"
FT /rpt_type=DIRECT
FT CDS complement(410. .790)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IG44"
FT /evidence=NOT_EXPERIMENTAL
FT /note="ORFC2; similar to 13.7 kDa BFDV ORF3 protein"
FT /product="unknown"
FT /protein_id="AAF74198.1"
FT /translation="MRVPVGHTQQLTEGQPAVEVINDDYFLVVVPVPPFTLHLVEFTSG
FT VVSCPTALPATGRARDDDDFRFEVTGLLTNQQLQVAQATPIFDVYLTEVSRDLGHCSSG
FT FHRGNSLAEIAPVSLRRNAQGK"
FT CDS complement(736. .984)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IG43"
FT /evidence=NOT_EXPERIMENTAL
FT /note="ORFC4; 8.9 kDa; similar to large polymerase protein
FT of newcastle disease virus CAB51327"
FT /product="unknown"
FT /protein_id="AAF74200.1"
FT /translation="MGYFFIQSGASSNLSWFQTSHLLIRRKSAWTQHLSSLYQASGGLL
FT LVTIITRDVNSTKAPFTGTLCGYRSVTRSSSQKGSQP"
FT CDS complement(1166. .1987)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IG42"
FT /note="Cap; 31.9 kDa; protein translation starts with an
FT alternative start codon"
FT /transl_except=(pos:1985. .1987,aa:Met)
FT /gene="cap"
FT /product="capsid protein"
FT /protein_id="AAF74197.1"
FT /translation="MRRRRFRRRRAPIRRRRIRRRRTRLSRNIRGHRRSSRIYYFRLRR
FT KDKITLTQATNDFKFGTGIFTFKLADVLTVGLNAPTLKVPFEDYQIALVKVEMRPLGVD
FT ITTWKGFGHTVPMYDARLKTFQGQVDLGDDPLMDFDGARKWDLRKGFKRLIRPRPQLTI
FT ADLATANQSAATWFSGRNQWIPLQVSGNSLFPQKVNHYGLAFSYLQPQPDPMYYECEVT
FT FYVKFRQFAWTTLNVPPTPNIEGMELMHICNGDCNQCFADALDPDSAVDSE"
FT repeat_region complement(1562. .1567)
FT /note="potential binding site for replicase"
FT /rpt_type=DIRECT
FT rep_origin join(<2009. .2037,1. .>26)
FT /note="putative stem loop structure required for
FT replication"
FT repeat_region complement(2014. .2019)
FT /note="potential binding site for replicase"
FT /rpt_type=DIRECT
FT misc_feature join(2031. .2037,1. .2)
FT /note="sequence conserved in circoviridae, geminiviridae
FT and nanoviridae"
FT CDS join(complement(1. .292),complement(2036. .2037))
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IG41"
FT /evidence=NOT_EXPERIMENTAL
FT /note="ORFC3; 10 kDa"
FT /product="unknown"
FT /protein_id="AAF74199.1"
FT /translation="MHKTLQMRGPLLPDLLPHNGIVEVTHQPRFQALNLFFSGVVQSEA
FT PSLCCSLAGGSTGRFATGAAFGGGHAALGGVAAWFARSHIAARCGSVAPSRG"
XX
SQ Sequence 2037 BP; 464 A; 545 C; 588 G; 440 T; 0 other;
AF252610 Length: 2037 September 18, 2002 10:52 Type: N Check: 9851 ..
1 acccgcgact tggagccacg gagccacatc gcgcagcgat atggctccgt
51 gcaaaccagg cagcaacccc cccaagggcc gcgtgtccgc cgccgaaggc
101 ggcgcccgtc gcgaagcgac ccgtcgaccc ccccgcgagg ctgcagcaaa
151 gcgatggtgc ttcactttga acaaccccac tgaagaagag attaagagcc
201 tggaaacgtg gctggtgagt gacttccact atgccattgt ggggaaggag
251 gtcggggagc aggggacccc gcatctgcaa ggttttgtgc atctaaagca
301 gaagaagcgg ttgccgcaac ttaagcagct ttttaagcgt gcgcattggg
351 agaaagcgcg cggcagtgat gaggacaatg agaagtactg ctctaaagag
401 ggtaatgtgc tacttaccct gggcattcct gcgaagggaa accggagcga
451 tctcagcgag gctgttgccg cggtgaaagc cggaagagca atgaccgagg
501 tcgcgcgaga cttcagtgag atatacgtca aatatgggcg tggcttgcgc
551 gacctgaagc tgctgattgg tcagcagccc cgtgacttca aaacggaagt
601 catcgtcatc acgggcccgc ccggttgcgg gaagagccgt tgggcagctg
651 actaccccgg aagtaaattc tacaagatga agggtgaatg gtgggacggg
701 tacgaccacc aggaagtagt catcattgat gacttctacg gctggctgcc
751 cttctgtgag ctgctgcgtg tgaccgaccg gtacccgcat aaggtgcccg
801 tgaaaggggc ctttgtggag ttcacgtctc gcgtgataat agtgaccagc
851 aacagtcccc ccgatgcctg gtacagcgag gaaaggtgct gtgtccaggc
901 gctcttccgg cggatcaaca agtggctggt ctggaaccac gacaagttcg
951 aagatgctcc ggattgtatg aagaagtacc ccatcaacta ttagcccccc
1001 acccccatga cactagtaaa gggacccaag ccagccgagc cggccgcgcc
1051 cgcgagcgaa gcgagcggcc gcgcggcctg gcgagtctgg cgggtccgga
1101 gcggagcgac cgcgaatgcg ggagcgaagc gactacactc gaaaatgaat
1151 ttgcaataaa aggctttatt cagaatccac agctgagtct gggtctaatg
1201 catctgcaaa acactggtta caatccccat tacaaatatg catcaattcc
1251 atgccctcaa tgttgggggt cggggggaca ttgagggtgg tccaagcaaa
1301 ctgcctgaac ttgacataga aggtcacttc acattcataa tacatggggt
1351 ctggttgggg ttgcaggtaa ctgaatgcga gcccatagtg attaactttc
1401 tggggaaaca agctgttgcc tgatacctgc agtggtatcc actggtttct
1451 ccctgagaac catgttgctg ccgactggtt tgccgtagcc agatccgcga
1501 ttgttagttg aggtcgtggc cttatgaggc gtttaaaccc ctttctcaaa
1551 tcccattttc tggctccgtc aaagtccatg agggggtcat ctcccaagtc
1601 cacctgccct tgaaaggttt tcagcctggc atcatacatc gggacagtgt
1651 gcccgaatcc tttccatgtc gtgatgtcaa cgcctagtgg tctcatttcc
1701 accttcacta acgcaatctg atagtcctca aatgggactt tcagcgttgg
1751 cgcgttaaga cccactgtga gtacatccgc gagtttgaat gtaaatatgc
1801 cagtaccgaa tttgaaatca ttggtcgcct gtgtcaatgt gatcttgtcc
1851 ttgcgacgta ggcggaagta gtaaatacgg ctactcctcc tgtggccacg
1901 tatgttccgg gagaggcgtg tccttcgtct cctgatccgg cgtcggcgaa
1951 tgggcgccct cctccggcgg aatctccgcc tccttatctg cggaagtgcg
2001 acgtcacttc cgtggctcca agtcgcggct tagtatt