Sequence of DPV Pigeon circovirus

Columbid circovirus (CoCV), complete genome.

ACC No: AF252610

Dated: 2001-01-18 | Length: 2037 | CRC: 1274374322

                !!NA_SEQUENCE 1.0
ID   AF252610   standard; circular DNA; VRL; 2037 BP.
XX
AC   AF252610;
XX
SV   AF252610.1
XX
DT   09-JUN-2000 (Rel. 64, Created)
DT   18-JAN-2001 (Rel. 66, Last updated, Version 7)
XX
DE   Columbid circovirus (CoCV), complete genome.
XX
KW   .
XX
OS   columbid circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-2037
RA   Mankertz A., Hattermann K., Ehlers B., Soike D.;
RT   "Cloning and sequencing of columbid circovirus (CoCV), a new circovirus
RT   from pigeons";
RL   Arch. Virol. 145:2469-2479(2000).
XX
RN   [2]
RP   1-2037
RA   Mankertz A., Hattermann K., Ehlers B., Soike D.;
RT   ;
RL   Submitted (05-APR-2000) to the EMBL/GenBank/DDBJ databases.
RL   P24, Robert Koch Institut, Nordufer 20, Berlin 13353, Germany
XX
DR   SPTREMBL; Q9IG41; Q9IG41.
DR   SPTREMBL; Q9IG42; Q9IG42.
DR   SPTREMBL; Q9IG43; Q9IG43.
DR   SPTREMBL; Q9IG44; Q9IG44.
DR   SPTREMBL; Q9IG45; Q9IG45.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2037
FT                   /db_xref="taxon:126070"
FT                   /organism="columbid circovirus"
FT                   /specific_host="pigeon"
FT   repeat_region   17. .32
FT                   /note="potential binding site for replicase"
FT                   /rpt_type=INVERTED
FT   repeat_region   complement(36. .51)
FT                   /note="potential binding site for replicase"
FT                   /rpt_type=INVERTED
FT   CDS             41. .994
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IG45"
FT                   /note="Rep; 36.3 kDa"
FT                   /gene="rep"
FT                   /product="replicase"
FT                   /protein_id="AAF74196.1"
FT                   /translation="MAPCKPGSNPPKGRVSAAEGGARREATRRPPREAAAKRWCFTLNN
FT                   PTEEEIKSLETWLVSDFHYAIVGKEVGEQGTPHLQGFVHLKQKKRLPQLKQLFKRAHWE
FT                   KARGSDEDNEKYCSKEGNVLLTLGIPAKGNRSDLSEAVAAVKAGRAMTEVARDFSEIYV
FT                   KYGRGLRDLKLLIGQQPRDFKTEVIVITGPPGCGKSRWAADYPGSKFYKMKGEWWDGYD
FT                   HQEVVIIDDFYGWLPFCELLRVTDRYPHKVPVKGAFVEFTSRVIIVTSNSPPDAWYSEE
FT                   RCCVQALFRRINKWLVWNHDKFEDAPDCMKKYPINY"
FT   repeat_region   complement(43. .48)
FT                   /note="potential binding site for replicase"
FT                   /rpt_type=DIRECT
FT   CDS             complement(410. .790)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IG44"
FT                   /evidence=NOT_EXPERIMENTAL
FT                   /note="ORFC2; similar to 13.7 kDa BFDV ORF3 protein"
FT                   /product="unknown"
FT                   /protein_id="AAF74198.1"
FT                   /translation="MRVPVGHTQQLTEGQPAVEVINDDYFLVVVPVPPFTLHLVEFTSG
FT                   VVSCPTALPATGRARDDDDFRFEVTGLLTNQQLQVAQATPIFDVYLTEVSRDLGHCSSG
FT                   FHRGNSLAEIAPVSLRRNAQGK"
FT   CDS             complement(736. .984)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IG43"
FT                   /evidence=NOT_EXPERIMENTAL
FT                   /note="ORFC4; 8.9 kDa; similar to large polymerase protein
FT                   of newcastle disease virus CAB51327"
FT                   /product="unknown"
FT                   /protein_id="AAF74200.1"
FT                   /translation="MGYFFIQSGASSNLSWFQTSHLLIRRKSAWTQHLSSLYQASGGLL
FT                   LVTIITRDVNSTKAPFTGTLCGYRSVTRSSSQKGSQP"
FT   CDS             complement(1166. .1987)
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IG42"
FT                   /note="Cap; 31.9 kDa; protein translation starts with an
FT                   alternative start codon"
FT                   /transl_except=(pos:1985. .1987,aa:Met)
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /protein_id="AAF74197.1"
FT                   /translation="MRRRRFRRRRAPIRRRRIRRRRTRLSRNIRGHRRSSRIYYFRLRR
FT                   KDKITLTQATNDFKFGTGIFTFKLADVLTVGLNAPTLKVPFEDYQIALVKVEMRPLGVD
FT                   ITTWKGFGHTVPMYDARLKTFQGQVDLGDDPLMDFDGARKWDLRKGFKRLIRPRPQLTI
FT                   ADLATANQSAATWFSGRNQWIPLQVSGNSLFPQKVNHYGLAFSYLQPQPDPMYYECEVT
FT                   FYVKFRQFAWTTLNVPPTPNIEGMELMHICNGDCNQCFADALDPDSAVDSE"
FT   repeat_region   complement(1562. .1567)
FT                   /note="potential binding site for replicase"
FT                   /rpt_type=DIRECT
FT   rep_origin      join(<2009. .2037,1. .>26)
FT                   /note="putative stem loop structure required for
FT                   replication"
FT   repeat_region   complement(2014. .2019)
FT                   /note="potential binding site for replicase"
FT                   /rpt_type=DIRECT
FT   misc_feature    join(2031. .2037,1. .2)
FT                   /note="sequence conserved in circoviridae, geminiviridae
FT                   and nanoviridae"
FT   CDS             join(complement(1. .292),complement(2036. .2037))
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9IG41"
FT                   /evidence=NOT_EXPERIMENTAL
FT                   /note="ORFC3; 10 kDa"
FT                   /product="unknown"
FT                   /protein_id="AAF74199.1"
FT                   /translation="MHKTLQMRGPLLPDLLPHNGIVEVTHQPRFQALNLFFSGVVQSEA
FT                   PSLCCSLAGGSTGRFATGAAFGGGHAALGGVAAWFARSHIAARCGSVAPSRG"
XX
SQ   Sequence 2037 BP; 464 A; 545 C; 588 G; 440 T; 0 other;

AF252610  Length: 2037  September 18, 2002 10:52  Type: N  Check: 9851  ..

       1  acccgcgact tggagccacg gagccacatc gcgcagcgat atggctccgt
      51  gcaaaccagg cagcaacccc cccaagggcc gcgtgtccgc cgccgaaggc
     101  ggcgcccgtc gcgaagcgac ccgtcgaccc ccccgcgagg ctgcagcaaa
     151  gcgatggtgc ttcactttga acaaccccac tgaagaagag attaagagcc
     201  tggaaacgtg gctggtgagt gacttccact atgccattgt ggggaaggag
     251  gtcggggagc aggggacccc gcatctgcaa ggttttgtgc atctaaagca
     301  gaagaagcgg ttgccgcaac ttaagcagct ttttaagcgt gcgcattggg
     351  agaaagcgcg cggcagtgat gaggacaatg agaagtactg ctctaaagag
     401  ggtaatgtgc tacttaccct gggcattcct gcgaagggaa accggagcga
     451  tctcagcgag gctgttgccg cggtgaaagc cggaagagca atgaccgagg
     501  tcgcgcgaga cttcagtgag atatacgtca aatatgggcg tggcttgcgc
     551  gacctgaagc tgctgattgg tcagcagccc cgtgacttca aaacggaagt
     601  catcgtcatc acgggcccgc ccggttgcgg gaagagccgt tgggcagctg
     651  actaccccgg aagtaaattc tacaagatga agggtgaatg gtgggacggg
     701  tacgaccacc aggaagtagt catcattgat gacttctacg gctggctgcc
     751  cttctgtgag ctgctgcgtg tgaccgaccg gtacccgcat aaggtgcccg
     801  tgaaaggggc ctttgtggag ttcacgtctc gcgtgataat agtgaccagc
     851  aacagtcccc ccgatgcctg gtacagcgag gaaaggtgct gtgtccaggc
     901  gctcttccgg cggatcaaca agtggctggt ctggaaccac gacaagttcg
     951  aagatgctcc ggattgtatg aagaagtacc ccatcaacta ttagcccccc
    1001  acccccatga cactagtaaa gggacccaag ccagccgagc cggccgcgcc
    1051  cgcgagcgaa gcgagcggcc gcgcggcctg gcgagtctgg cgggtccgga
    1101  gcggagcgac cgcgaatgcg ggagcgaagc gactacactc gaaaatgaat
    1151  ttgcaataaa aggctttatt cagaatccac agctgagtct gggtctaatg
    1201  catctgcaaa acactggtta caatccccat tacaaatatg catcaattcc
    1251  atgccctcaa tgttgggggt cggggggaca ttgagggtgg tccaagcaaa
    1301  ctgcctgaac ttgacataga aggtcacttc acattcataa tacatggggt
    1351  ctggttgggg ttgcaggtaa ctgaatgcga gcccatagtg attaactttc
    1401  tggggaaaca agctgttgcc tgatacctgc agtggtatcc actggtttct
    1451  ccctgagaac catgttgctg ccgactggtt tgccgtagcc agatccgcga
    1501  ttgttagttg aggtcgtggc cttatgaggc gtttaaaccc ctttctcaaa
    1551  tcccattttc tggctccgtc aaagtccatg agggggtcat ctcccaagtc
    1601  cacctgccct tgaaaggttt tcagcctggc atcatacatc gggacagtgt
    1651  gcccgaatcc tttccatgtc gtgatgtcaa cgcctagtgg tctcatttcc
    1701  accttcacta acgcaatctg atagtcctca aatgggactt tcagcgttgg
    1751  cgcgttaaga cccactgtga gtacatccgc gagtttgaat gtaaatatgc
    1801  cagtaccgaa tttgaaatca ttggtcgcct gtgtcaatgt gatcttgtcc
    1851  ttgcgacgta ggcggaagta gtaaatacgg ctactcctcc tgtggccacg
    1901  tatgttccgg gagaggcgtg tccttcgtct cctgatccgg cgtcggcgaa
    1951  tgggcgccct cctccggcgg aatctccgcc tccttatctg cggaagtgcg
    2001  acgtcacttc cgtggctcca agtcgcggct tagtatt