Sequence of DPV Potato virus X

Potato virus X strain Taiwan, complete genome.

ACC No: AF272736

Dated: 2005-08-26 | Length: 6451 | CRC: 1899526547

                !!NA_SEQUENCE 1.0
ID   AF272736   standard; genomic RNA; VRL; 6451 BP.
XX
AC   AF272736;
XX
SV   AF272736.2
XX
DT   13-SEP-2000 (Rel. 65, Created)
DT   26-AUG-2005 (Rel. 85, Last updated, Version 2)
XX
DE   Potato virus X strain Taiwan, complete genome.
XX
KW   .
XX
OS   Potato virus X
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-6451
RA   Liao J.-T., Hsu Y.-H.;
RT   "Potato virus X Taiwan strain sequence";
RL   Unpublished.
XX
RN   [2]
RP   1-6451
RA   Liao J.-T., Hsu Y.-H.;
RT   ;
RL   Submitted (26-MAY-2000) to the EMBL/GenBank/DDBJ databases.
RL   Graduate Institute of Agricultural Biotechnology, 250, Kuo-Kuang Road,,
RL   Taichung 40227, Taiwan
XX
RN   [3]
RC   Sequence update by submitter
RP   1-6451
RA   Liao J.-T., Hsu Y.-H.;
RT   ;
RL   Submitted (22-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Graduate Institute of Agricultural Biotechnology, 250, Kuo-Kuang Road,,
RL   Taichung 40227, Taiwan
XX
CC   On Aug 24, 2005 this sequence version replaced gi:10048274.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .6451
FT                   /db_xref="taxon:12183"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Potato virus X"
FT                   /strain="Taiwan"
FT   CDS             85. .4455
FT                   /codon_start=1
FT                   /note="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="AAZ82034.1"
FT                   /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV
FT                   EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM
FT                   RRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSYIVETFQ
FT                   NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQ
FT                   WLKVGKIKWRDPKDGLLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR
FT                   TFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS
FT                   SDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFG
FT                   LEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDLL
FT                   DCFTRMPSYAVNAEEDLAAIRKTPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHRKHSR
FT                   EVKHQAVKKAKRLAEIQGSMRAEGEAESNEMSGGMGAIPSNAELPSTSDARQELTLPIT
FT                   KPVPARWEDASSTDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALE
FT                   IQRDRSGTMIMPITEMVSGLEKEDFPEGTPKELARELLAMNRSPATIPLDLLRARDYGS
FT                   DVKNKRIGAITKTQATSWGEYLTGKIESLNERKVATCVIHGAGGSGKSHAIQKALREIG
FT                   KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIE
FT                   ALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD
FT                   LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTK
FT                   PKVQIVLDHNTQVCSTNVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV
FT                   REQALKEYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHSESHGHSNC
FT                   VQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA
FT                   MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWV
FT                   TKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS
FT                   AWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQI
FT                   FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF
FT                   HRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC
FT                   QDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL"
FT   CDS             4486. .5166
FT                   /codon_start=1
FT                   /db_xref="GOA:Q9E2G9"
FT                   /db_xref="InterPro:IPR000606"
FT                   /db_xref="InterPro:IPR005829"
FT                   /db_xref="UniProtKB/TrEMBL:Q9E2G9"
FT                   /note="TGBp1"
FT                   /product="triple-gene-block protein 1"
FT                   /protein_id="AAG12333.2"
FT                   /translation="MDILIISLKSLGYSRTSKSLDSGPLVVHAVAGAGKSTALRKLILR
FT                   HPTFTVHTLGVPDKVSIRTRGIQKPGPIPEGNFAILDEYTLDNTTRNSYQALFADPYQA
FT                   PEFSLEPHFYLETSFRVPRKVADLIASCGFDFETNSQEEGHLEITGIFKGPLLGKVIAI
FT                   DEEAETTLSRHGVEFVKPCQVTGLEFKVVTIVSASPIEEIGQSTAFYNAITRSKGLTYV
FT                   RAGT"
FT   CDS             5147. .5494
FT                   /codon_start=1
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q77RX1"
FT                   /note="TGBp2"
FT                   /product="triple-gene-block protein 2"
FT                   /protein_id="AAG12334.2"
FT                   /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN
FT                   IHSLPHGGAYRDGTKAILYNSPNLGSRVSLHNGKNAAFAAVLLLTLLIYGSKYISQRNH
FT                   TYACGNNHSSH"
FT   CDS             5427. .5639
FT                   /codon_start=1
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q85247"
FT                   /note="TGBp3"
FT                   /product="triple-gene-block protein 3"
FT                   /protein_id="AAG12335.2"
FT                   /translation="MEVNTYLNAIILMLVVTIIAVISTSLVRTEPCVIKITGESITVLA
FT                   RKLDAETIRAIADLKPLSVERLSFH"
FT   CDS             5650. .6363
FT                   /codon_start=1
FT                   /db_xref="GOA:Q77LU0"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q77LU0"
FT                   /note="CP"
FT                   /product="coat protein"
FT                   /protein_id="AAG12336.1"
FT                   /translation="MSAPASTTQATGSTTSTTTKTAGATPATASGLFTIPDGDFFSTAR
FT                   AIVASNAVATNEDLSKIEAIWKDMKVPTDTMAQAAWDLVRHCADVGSSAQTEMIDTGPY
FT                   SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD
FT                   FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI
FT                   TGTTTAEAVVTLPPP"
XX
SQ   Sequence 6451 BP; 1994 A; 1519 C; 1472 G; 1466 T; 0 other;

AF272736  Length: 6451  August 30, 2005 08:46  Type: N  Check: 4202  ..

       1  gaaaactaaa ccatacacca ccaacacaac caaacccacc acgcccaatt
      51  gttacacacc cgcttgaaaa agaaagtcta acaaatggcc aaagtgcgcg
     101  aggtttacca atcctttaca gactccacca caaaaactct catccaagat
     151  gaggcttata gaaatattcg tcccatcatg gaaaaacata aactagctaa
     201  cccgtacgct caaacggttg aagcggctaa tgatctagag gggttcggca
     251  tagccaccaa tccctatagc attgaattgc atacacatgc agccgctaag
     301  accatagaga ataaacttct agaggtgctt ggttccatcc taccacaaga
     351  acctgttaca tttatgttcc ttaagcccag gaagctaaac tatatgagaa
     401  gaaacccgcg gattaaggac attttccaca atgttgctat tgaaccaaga
     451  gacgtagcaa ggtaccccaa ggaaacaata attgacaaac tcacagagat
     501  cacaacggac acagcatata ttagtgacac tctgcacttc ctggatccaa
     551  gctacatagt ggagacattc cagaactgcc caaaactgca aacattgtat
     601  gcgaccttag ttctccccgt tgaggcagcc ttcaaaatgg aaagcactca
     651  cccaaacata tacagcctca aatacttcgg agatggtttc cagtatatac
     701  caggcaacca tggtggtgga gcataccatc atgaatttgc tcatttacaa
     751  tggctcaaag tgggaaagat caagtggagg gaccccaagg atggccttct
     801  cggacatctc aattacacga ctgagcaggt tgagatgcac acagtgacag
     851  tgcagttgca ggaatcgttc gcggcaaacc atttgtactg catcagaaga
     901  ggggacttgc tcacaccgga ggtgcgcact ttcggccaac ctgacaggta
     951  tgtgattcca ccacagatct ttctcccgaa agttcacaac tgcaagaagc
    1001  cgattcttaa gaaaactatg atgcagctct tcttgtatgt taggacagtc
    1051  aaggtcgcaa aaaattgtga catttttgcc aaagtcagac aattaattaa
    1101  atcatctgac ttggacaaat attctgccgt ggaactggtt tacctagtaa
    1151  gctatatgga gttcctggct gatttacaag ctaccacctg cttctcagac
    1201  acactttctg gtggcttgct aacaaagacc cttgcaccgg taagagcttg
    1251  gatacaagag aaaaagatgc agctgtttgg tcttgaggac tacgcgaagt
    1301  tagtcaaagc agttgatttc cacccggtgg atttctcttt taaagtggaa
    1351  acttgggact tcagattcca ccccttgcaa gcgtggaaag ccttccgacc
    1401  aagggaagtg tcggatgtag aggaaatgga gagtttgttc tcagatgggg
    1451  acctgcttga ttgcttcaca agaatgccat cttacgcagt aaacgcagag
    1501  gaagatttag ctgcaatcag gaaaacgcct gagatggatg tcggccaaga
    1551  agttaaagaa cctgcaggag acaggaatca atactcaaac cctgcagaaa
    1601  ctttcctcaa caagctccac aggaaacaca gtagggaggt gaaacatcag
    1651  gccgtaaaga aagctaaacg cctagctgaa atccaggggt ccatgagagc
    1701  tgaaggtgag gccgagtcaa atgagatgag cggaggcatg ggggcaatac
    1751  ctagcaacgc cgaacttcct agcacgagtg atgcccgaca agaactcaca
    1801  ctcccaatca ccaaacctgt ccctgcaagg tgggaagatg cttcatccac
    1851  agattctagt gtggaagagg agcaggtgaa actccctgga aaagaagccg
    1901  ttgagacagc aacacaacaa gttatcgaag gactcccttg gaaacactgg
    1951  attcctcaac taaatgctgt tgggtttaag gcactggaaa ttcagaggga
    2001  tagaagtgga acaatgatca tgcccatcac agaaatggtc tccgggttgg
    2051  agaaagagga cttcccggaa ggaactccaa aagagttggc acgagaattg
    2101  ctcgccatga acagaagccc tgccaccatc cctttggacc tgcttagagc
    2151  cagagactac ggcagtgatg tgaagaataa gagaattggt gccatcacaa
    2201  agacacaagc aacaagctgg ggcgagtacc taacaggaaa gatagagagc
    2251  ctgaatgaga ggaaagttgc gacttgtgtc attcatggag ctggaggctc
    2301  tggaaaaagt catgccattc agaaggcatt gagagaaatt ggcaagggct
    2351  cagacatcac tgtagtcctg ccgaccaatg aactgcgact agattggagt
    2401  aagaaggtgc ccaacactga accgtacatg ttcaagacct atgaaaaggc
    2451  gttaattggg ggaacaggca gcatagtcat ctttgacgat tactcaaaac
    2501  ttcctcccgg ttacatagaa gccttaatct gtttttactc caagatcaag
    2551  ctagtcattc taacaggaga tagcagacag agcgtctacc atgaaactgc
    2601  agaggacgcc tctatcaggc atttgggacc agcgacagag tacttctcaa
    2651  aatactgccg atactatctc aatgctacac accgcaacaa gaaagacctt
    2701  gcgaacatgc tcggtgtcta cagtgagagg acgggagtta ccgaaatcag
    2751  catgagcgcc gagttcttag aaggaatccc aactttggta ccctcggatg
    2801  aaaagagaag gctgtacatg ggtaccggga ggaatgacac gttcacatac
    2851  gctggatgcc aggggctaac taagccgaaa gtacaaatag tgctggacca
    2901  caacacccaa gtgtgtagca cgaatgtgat gtacacggca ctttctagag
    2951  ccaccgacag gattcacttc gtgaacacaa gtgcaaactc ttcggccttt
    3001  tgggaaaagt tagacagcac cccttatctc aagactttcc tatcagtggt
    3051  gagagaacaa gcactcaagg agtacgagcc ggcagaggca gagccaattc
    3101  gagagcctga gccccagaca cacatgtgtg tcgaaaatga ggagtccgtg
    3151  ctagaagagt acaaagagga actcttggaa aagtttgaca gagagatcca
    3201  ctctgaatcc catggccatt caaactgtgt ccaaactgaa gacacaacca
    3251  ttcagttgtt ctcgcatcaa caagcaaaag atgagaccct cctctgggcg
    3301  accatagatg cgcggctcaa gaccagcaat caagaaacaa acttccgaga
    3351  attcttgagc aagaaggaca ttggggacgt tctgtttttg aactaccaaa
    3401  aagctatggg tttgcccaaa gaacgtattc ctttttcaca agaggtctgg
    3451  gaagcttgtg cccatgaagt acaaagcaag tacctcagta agtcgaagtg
    3501  caacttgatc aatgggactg tgagacagag cccagacttt gatgaaaaca
    3551  aaattatggt attcctcaag tcgcagtggg tcacaaaggt ggaaaaacta
    3601  ggtctaccca agattaagcc aggtcaaacc atagcagctt tttatcagca
    3651  gactgtgatg ctttttggaa ctatggctag gtacatgcga tggttcagac
    3701  aggctttcca gccaaaagaa gtcttcataa actgtgagac cacgccagaa
    3751  gacatgtctg catgggcctt gaacaactgg aatttcagta gacctagctt
    3801  ggctaatgat tacacagcct tcgaccagtc tcaggatgga gctatgttgc
    3851  aatttgaggt gctcaaagct aagcaccact gcataccaga ggaaattatc
    3901  caagcataca tagacattaa gaccaatgca cagattttcc taggcacatt
    3951  gtcaattatg cgcctgactg gtgaaggtcc cacctttgat gcaaacactg
    4001  agtgcaacat agcttacacc catacaaagt ttgacatccc ggccggaact
    4051  gctcaagttt atgcaggaga cgactcagca ctggactgcg ttccagaagt
    4101  gaagcatagt ttccacaggc ttgaagacaa attactcctc aagtcgaagc
    4151  ccgtaatcac gcaacaaaag aaaggcagtt ggcctgagtt ttgtggttgg
    4201  ctgattacac caaaaggggt aatgaaagac ccaattaagc tccatgttag
    4251  cttaaaattg gccgaagcta agggtgaact caagaaatgt caagattcct
    4301  atgaaattga tctgagttat gcctatgacc acaaggactc tctacatgac
    4351  ctgttcgatg agaaacagtg tcaggcacat acactcactt gcaggacact
    4401  aatcaagtca gggagaggca ctgtctcact tccccgcctc agaaactttc
    4451  tttaaccgtt aagttacctt atagatttga ataagatgga tattctcatc
    4501  attagtttga aaagtttagg ttattctagg acttctaaat ctttagactc
    4551  aggacctttg gtagtacatg cagtagccgg agccggtaag tccacagccc
    4601  taaggaagtt gatcctcaga cacccaacat tcaccgtgca tacactcggg
    4651  gtccctgaca aggtgagtat cagaactaga ggcatacaga agccaggacc
    4701  tattcctgag ggcaatttcg caatcctcga tgagtatact ttggacaaca
    4751  ccacaaggaa ctcataccag gcactttttg ctgaccctta tcaggcacct
    4801  gagtttagcc tagagcccca cttttacttg gaaacatcat ttcgagttcc
    4851  gaggaaagtg gcagatttga tagcaagctg tggcttcgat ttcgagacca
    4901  actcacagga ggaagggcac ttagagatca ctggtatatt caaagggccc
    4951  ctacttggga aggtgatagc cattgacgag gaggctgaga caacgctgtc
    5001  caggcatggt gttgagtttg ttaagccctg ccaagtgact ggacttgaat
    5051  tcaaagtagt cactattgtg tctgcctcac caatagagga aattggccag
    5101  tccacagctt tctacaacgc catcaccagg tcaaagggat tgacatatgt
    5151  ccgcgcaggg acatagactg accgctccgg tcaattctga aaaagtgtac
    5201  atagtattag gtctatcatt tgctttagtt tcaattacct ttctgctttc
    5251  tagaaatagt ttaccccacg tcggtgacaa cattcacagc ttaccacacg
    5301  gaggagctta cagagacggc accaaagcaa tcttgtacaa ctccccaaat
    5351  ttagggtcac gagtgagtct acacaacgga aagaacgcag catttgctgc
    5401  cgttttgcta ctgactttgc tgatctatgg aagtaaatac atatctcaac
    5451  gcaatcatac ttatgcttgt ggtaacaatc atagcagtca ttagtacttc
    5501  cttagtgagg actgaacctt gtgtcatcaa gattactgga gaatcaatca
    5551  cagtgttggc ccgcaaatta gacgcagaaa ctatcagagc cattgccgat
    5601  ctcaagccac tctccgttga acggttaagt ttccattgat actcgaaaga
    5651  tgtcagcacc agctagcaca acacaggcca cagggtcaac tacttcaact
    5701  accacgaaaa ctgcaggcgc aactcctgcc acagcttcag gactgtttac
    5751  catcccggat ggggatttct ttagtacagc ccgtgccata gtagccagca
    5801  atgccgttgc aacaaatgag gacctcagta agattgaggc tatttggaag
    5851  gacatgaagg tgcctacaga cactatggca caggctgctt gggacttagt
    5901  cagacactgt gctgatgtgg gctcatctgc tcaaacagaa atgatagata
    5951  caggtcccta ttccaacggc atcagcagag ctagactggc agcagcgatc
    6001  aaagaggttt gcacacttag gcaattttgc atgaagtatg ccccagtggt
    6051  atggaactgg atgttgacta acaacagtcc acctgctaac tggcaagcac
    6101  aaggtttcaa gcctgagcac aaattcgctg cattcgactt ctttaatgga
    6151  gtcactaacc cagctgccat catgcccaaa gaggggctca tccggccacc
    6201  gtctgaagct gaaatgaatg ctgcccaaac tgctgccttt gtgaagatta
    6251  cgaaggccag ggcacaatcc aacgactttg ccagcttaga tgcagctgtc
    6301  actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct
    6351  tccaccacca taactacgtc tacataaccg acgcctaccc cagtttcata
    6401  gtattttctg gtttgattgt atgaataata taaataaaaa aaaaaaaaaa
    6451  a