Sequence of DPV Trichomonas vaginalis virus 3
Trichomonas vaginalis virus 3 capsid protein (cap) and RNA-dependent RNA polymerase (pol) genes, complete cds.
ACC No: AF325840
Dated: 2011-03-04 | Length: 4844 | CRC: -1198835809
ID AF325840; SV 1; linear; genomic RNA; STD; VRL; 4844 BP.
XX
AC AF325840;
XX
DT 05-DEC-2001 (Rel. 70, Created)
DT 04-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE Trichomonas vaginalis virus 3 capsid protein (cap) and RNA-dependent RNA
DE polymerase (pol) genes, complete cds.
XX
KW .
XX
OS Trichomonas vaginalis virus 3
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN [1]
RP 1-4844
RX PUBMED; 21110050.
RA Bessarab I.N., Nakajima R., Liu H.W., Tai J.H.;
RT "Identification and characterization of a type III Trichomonas vaginalis
RT virus in the protozoan pathogen Trichomonas vaginalis";
RL Arch. Virol. 156(2):285-294(2011).
XX
RN [2]
RP 1-4844
RA Bessarab I.N., Tai J.H.;
RT "The complete DNA sequence of type III Trichomonas vaginalis virus";
RL Unpublished.
XX
RN [3]
RP 1-4844
RA Bessarab I.N., Tai J.H.;
RT ;
RL Submitted (04-DEC-2000) to the EMBL/GenBank/DDBJ databases.
RL Division of Infectious Diseases, Institute of Biomedical Sciences, Academia
RL Sinica, Taipei, Taiwan 11529, Republic of China
XX
FH Key Location/Qualifiers
FH
FT source 1. .4844
FT /organism="Trichomonas vaginalis virus 3"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:170965"
FT gene 360. .2486
FT /gene="cap"
FT CDS 360. .2486
FT /codon_start=1
FT /gene="cap"
FT /product="capsid protein"
FT /db_xref="UniProtKB/TrEMBL:Q8V616"
FT /protein_id="AAL37369.1"
FT /translation="MSAPEPLNTEVRSPNGVSEAIETQNMAVTQSSVSNEIKNDTQSDL
FT QTLKKQLQPLYRSTDFNTLYNFFYGLDVPASTDRVGHAIQRNTSVNDTNEVVSFPLTAT
FT VSHTFSNTPVPANIQPLQISVADDSVNYELDESGTLCPTLDSSVHVQRATSLASALKVK
FT LTGEIMHSDSVRPVQTPQLIAYLFGVLLGVKDRVNIHRNQPTNLWRSLCSPGRAAQAKP
FT FFDEFPNNKFRTGALLAPPLPDAGFGPFPAEGLNQNSKLDFRSKGYVFYKQRTYNPDEM
FT NRAFWFLWAIYNRMPEDFQLSYPLNITFCTSELPVQNPMPGADAISNEQCEKALLLLEK
FT VVLEFFNNDRKLAYYYVFKGCQFVMRPCSCYQEGGLIRKASRNVALRGFTGIYYLAGFT
FT DQYANMISCAVHPGVVGALFQYVDTMVLQAVFSLSGPKLVRFAAPPEYQGRHACPFSFV
FT ADENYWGIAPGIEAEPVGMYYMDIIQRKAEHDLFIETFMDIYGSTASIICANIETSLFT
FT SGTNVLNHRMQKDFARDTPKPGTLRHQHAIINRFHEPEYAYRLGILANGVIPLSGSFEV
FT DILKEAELLVTGEDIRNLPGLRCLCTRGLDAILGLRPVQQKRKKMCYFRTLDGNFHEVT
FT IRSETRDLQVWRDHGYLARPYACHIIDSEGIEFYDKSNGLYKGRVNVLVSGFAIPGRAY
FT QGPRLQVATMAAQI"
FT gene 2645. .4690
FT /gene="pol"
FT CDS 2645. .4690
FT /codon_start=1
FT /gene="pol"
FT /product="RNA-dependent RNA polymerase"
FT /note="translated via ribosomal frameshift"
FT /db_xref="GOA:Q8V615"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="UniProtKB/TrEMBL:Q8V615"
FT /protein_id="AAL37370.1"
FT /translation="MDHVSDIAYLNFLRWVLLPYNGQTLRPHPSVWRQTPYPEHVNLKF
FT LNKEMELELFPLKKAPQADLKVNCYARNVLASTELTDDLLKQSLPIGLNNDSVCGIVIV
FT LELLRIAGVPSKLLPIIGQAIANKDPFIKELSDFNKMIGATTSRIANILTECNTLIGRG
FT VKSSDPSADLYHRVAPEGNRHEAKIPRHILIEAINKIYKNEMTDMPPPGDFKLHLITSP
FT LWCKAGSHHHPHFAKYSSRLDFVMDVPADKIAAVPPSVFITQAEKLEHGKTRYIYNCDT
FT XSYLFFDYILHYVECVWSNESVLLNPAAMSVERFSVLDYPEYCMIDYTDFNSQHSLESQ
FT KLVFECLRPYLPSEMHPILDWCIASMDHMEIGGQHWLSTLPSGHRATTFINSVLNKAYL
FT IPYIGDTTSFHCGDDVLLCGKYDYQTLIDTLPYELNKSKQSFGPNAEFLRLHRRAGDVI
FT GYPSRAVSSLVSGNWLSKTSWEWQPSLISVTNQCNVIISRSQLNIRFIPAMQQELRNRY
FT IDKMSEPFDVGSDYYVMPGCPCYSDAATTIVPNVPQLECSDVPFSQAQKVFDTMRDICP
FT EFTTVNDVIDRVLARRTSNAVKNITYNVCAPVAPQVCIAVNPAHYQFLLRKKYYPREHI
FT APPGFDDSTNSKLVFSTYDLAPSIAMKSCAVLTPAKIICGHGLRSG"
XX
SQ Sequence 4844 BP; 1270 A; 1287 C; 1025 G; 1258 T; 4 other;
af325840 Length: 4844 04-MAR-2011 Type: N Check: 1994 ..
1 cttaaaaagc ctagtccact ttttaagccg gttagacttc accgtagata
51 cttgggcaaa attaatcaac accctcctgg aatcgccggg gtgttgcgag
101 ccgtaagaga ccggttctaa aggactgaca tagcgccgcg agggtaggtg
151 gtcgatagcc cgtttgacgg agtagcgata ttcctgattc tggtgtagca
201 tcgacggggg ccccctagcg tgagctcagc acgttgtgaa aacgaaaaac
251 tgcatgtctg aggcttcgca gtagcgtgag ctcggagcac cctaaaaagt
301 gctctgtttt gtaacagcca acgattgtta cgaaactcta gtgtattgcg
351 tgcaacggta tgtcagctcc cgagccctta aatactgaag tacgctcacc
401 taatggtgtt agtgaagcca tagaaactca aaacatggct gtcactcaaa
451 gcagtgtgtc aaacgaaatt aaaaatgaca cacaaagtga tctgcaaaca
501 cttaaaaaac agttacaacc gctctacaga tccacagatt ttaatactct
551 ttataatttc ttttatggtt tagatgtccc agcttcaaca gatcgcgtcg
601 gtcacgctat ccagcgtaac acctcagtca atgatacaaa tgaagttgtt
651 agtttccctc ttacggcgac ggtatcacac acgttttcaa acacgccagt
701 tccagccaac atacagcctc ttcaaatctc agtagccgac gattcagtca
751 actatgagct cgatgaaagt ggaacattat gtccaacgtt agatagctcc
801 gtccatgtcc aaagagccac ttccttggcc agcgctctca aggtcaaatt
851 aacgggcgaa atcatgcact ctgactcagt cagaccagtc caaactccac
901 aattgattgc ttatttattc ggcgtcctcc tcggtgtcaa agatcgcgtc
951 aacattcacc gcaatcaacc cactaactta tggagaagtt tatgttcgcc
1001 tggtcgtgct gctcaggcaa agcctttctt cgatgaattt ccaaacaaca
1051 agttcaggac cggtgctctt ttggcacctc ctctccccga tgccggcttc
1101 ggtcctttcc cagctgaagg ccttaaccaa aattccaagc ttgattttag
1151 atcaaaggga tacgtcttct acaaacaacg cacttacaat ccagacgaaa
1201 tgaaccgtgc gttctggttc ctttgggcga tctacaatcg tatgcctgaa
1251 gatttccaac tatcataccc attaaacatt accttctgca cttccgaatt
1301 gccagtccaa aacccgatgc caggggccga cgcaatctca aatgagcaat
1351 gtgaaaaagc gctccttctc ctcgaaaaag tcgtcctcga attcttcaac
1401 aatgatcgca aactcgctta ttattacgtt ttcaaaggat gccagttcgt
1451 tatgcgccct tgctcctgct accaagaagg aggcttgatc cgcaaagcct
1501 cacgcaacgt tgccctccgt ggcttcaccg gtatctatta tttggccggc
1551 ttcacagatc aatacgccaa catgatttca tgtgctgttc acccaggtgt
1601 tgttggcgct ctcttccaat acgtcgatac gatggtttta caagcggttt
1651 tctccctctc tggcccaaag ttggtccgct tcgccgctcc gcctgaatat
1701 caaggtcgcc acgcttgtcc tttctcattt gtcgccgacg aaaattactg
1751 gggcattgct ccgggtattg aagccgaacc cgtcggcatg tattacatgg
1801 acatcatcca acgcaaggcc gagcatgatt tgttcatcga aaccttcatg
1851 gatatctacg gttcaacagc ttccatcatt tgcgccaata tcgaaacgag
1901 cttattcacc tctggcacta acgtcttgaa ccatcgcatg caaaaagact
1951 tcgctcgcga cactcctaag ccaggaaccc tccgtcatca acacgccatc
2001 atcaaccgct tccacgaacc tgaatacgcc taccgccttg gcatccttgc
2051 taatggtgtt atccctctca gcggctcatt cgaggtcgat atcctcaaag
2101 aagctgagct tctcgtcaca ggtgaagata tccgcaatct ccctggttta
2151 cgttgcttgt gcacacgcgg ccttgatgca atcctcggtc tccgcccagt
2201 ccagcagaag cgcaagaaga tgtgttactt ccgcactctc gatggcaact
2251 tccatgaagt aacaatcaga tcagagacgc gcgatttaca ggtctggcgt
2301 gatcacggct accttgctcg tccatacgcg tgccatatta tcgattcaga
2351 aggcatagaa ttctacgaca aatccaacgg tctctataag ggccgtgtca
2401 atgtccttgt ttctggattt gccatcccag gtcgcgcgta tcagggccct
2451 cgcttgcagg tagcaacaat ggccgcccag atctaagcga cgtcccggcg
2501 acaggaagtc tgtccaacct cattaccctt tccaaagcaa gtcggctacc
2551 ataccgtaag ctgagggaag gcgtgagagc gtcagactac accgtcgccc
2601 gcgagttagc tagcgccttt cgcaattctc gcctaactcg ccaaatggat
2651 catgtctcag atatagctta tcttaatttc ctgagatggg tgttgttacc
2701 ttacaacggt caaacattac gaccacaccc cagcgtgtgg cgtcagacac
2751 cctaccccga acatgtcaat ttgaagttcc tgaacaagga aatggagctc
2801 gaactcttcc cacttaagaa ggccccacaa gccgatctta aagtgaactg
2851 ttacgcgcga aacgtccttg cttccacaga gctaaccgac gacttactca
2901 agcagagttt acccataggt ctcaacaatg actcagtttg tggaatcgtc
2951 atcgttttag agctgcttcg gattgcaggt gttccaagta agttactacc
3001 aattattggc caagctattg ccaataaaga tccattcatt aaggaattgt
3051 ccgatttcaa caagatgata ggagcgacga cttcccgtat tgctaacatt
3101 ctcacagagt gcaatacatt gataggtcgc ggtgttaagt catctgatcc
3151 aagtgccgat ttgtatcacc gggtagcgcc tgagggcaat aggcacgagg
3201 cgaagattcc tcgacacatc cttatcgaag ccataaacaa aatctacaaa
3251 aacgaaatga cagacatgcc tccaccagga gatttcaagc tccacttaat
3301 aacgagcccc ctatggtgta aggctggttc tcatcatcat ccacacttcg
3351 ccaagtatag ttcacgcttg gatttcgtta tggatgttcc agcagacaaa
3401 attgctgctg taccaccctc ggttttcatc actcaagcgg agaaattgga
3451 acacggtaag actaggtaca tttataactg tgacacantt tcttacctgt
3501 tcttcgatta catcctacat tatgtcgaat gtgtgtggtc aaacgagtca
3551 gtcttgctca acccagctgc tatgagtgtt gagcggttta gcgtcctaga
3601 ctatccggag tattgcatga tcgattacac agatttcaat tctcaacaca
3651 gccttgaatc ccagaagctt gtattcgagt gtttgagacc gtacttgcca
3701 agcgaaatgc atccaatctt agattggtgt atcgctagca tggaccacat
3751 ggaaattggc gggcaacatt ggttaagcac gttgccttcg ggacatagag
3801 ctactacgtt tatcaactca gtcctgaata aagcatacct gattccttac
3851 ataggcgaca ccacctcttt ccattgcggt gacgacgtat tactatgtgg
3901 yaaatacgac tatcagacac tcattgatac cctaccctat gaattaaaca
3951 agagcaaaca gagctttgga cctaatgccg agttcttgcg cttgcatagg
4001 cgtgcgggtg acgtgatagg ctacccatca agggctgttt cgagtctcgt
4051 atctggaaat tggttaagta agacttcatg ggaatggcag ccaagtctca
4101 tttcggtcac gaatcaatgc aatgtgatca tctcacgctc acagttaaac
4151 atcaggttca tccccgctat gcagcaggaa ctacgcaatc gttacataga
4201 taaaatgagc gagcccttcg atgtcggctc ggattactac gtcatgccag
4251 gttgtccatg ttatagtgat gccgcgacaa caatcgttcc gaatgttccc
4301 caactggaat gttccgacgt accgttttcg caggcacaaa aggtttttga
4351 tactatgcgc gacatctgtc ctgagttcac cacagtcaac gacgtcatcg
4401 acagagttct agctcgtcgg acttccaatg ctgtcaaaaa catcacgtac
4451 aatgtttgtg ctcctgtagc acctcaagtt tgcatagccg taaacccagc
4501 acattaccaa tttctgttac gtaagaagta ctacccacgt gaacacattg
4551 cgccccccgg ctttgatgat tcaacgaact ctaagcttgt tttytcgact
4601 tacgatctag ctccttcaat tgctatgaaa tcgtgcgctg ttttgacccc
4651 ggcaaagata atatgcggtc acggactacg cagtggttga ttyagcacgc
4701 tagtaccgcg cgacagtcgg taccgtctag gccacgtaca gtctattgtc
4751 ctcggaccct ctgcctatag gttaatagga atacagtgtt actgttgtgt
4801 gtatcgctct aggcacacga acgtgctacc ccacgtttag ttca