Sequence of DPV Trichomonas vaginalis virus 3
Trichomonas vaginalis virus 3 capsid protein (cap) and RNA-dependent RNA polymerase (pol) genes, complete cds.
ACC No: AF325840
Dated: 2011-03-04 | Length: 4844 | CRC: -1198835809
ID AF325840; SV 1; linear; genomic RNA; STD; VRL; 4844 BP. XX AC AF325840; XX DT 05-DEC-2001 (Rel. 70, Created) DT 04-MAR-2011 (Rel. 108, Last updated, Version 4) XX DE Trichomonas vaginalis virus 3 capsid protein (cap) and RNA-dependent RNA DE polymerase (pol) genes, complete cds. XX KW . XX OS Trichomonas vaginalis virus 3 OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4844 RX PUBMED; 21110050. RA Bessarab I.N., Nakajima R., Liu H.W., Tai J.H.; RT "Identification and characterization of a type III Trichomonas vaginalis RT virus in the protozoan pathogen Trichomonas vaginalis"; RL Arch. Virol. 156(2):285-294(2011). XX RN [2] RP 1-4844 RA Bessarab I.N., Tai J.H.; RT "The complete DNA sequence of type III Trichomonas vaginalis virus"; RL Unpublished. XX RN [3] RP 1-4844 RA Bessarab I.N., Tai J.H.; RT ; RL Submitted (04-DEC-2000) to the EMBL/GenBank/DDBJ databases. RL Division of Infectious Diseases, Institute of Biomedical Sciences, Academia RL Sinica, Taipei, Taiwan 11529, Republic of China XX FH Key Location/Qualifiers FH FT source 1. .4844 FT /organism="Trichomonas vaginalis virus 3" FT /mol_type="genomic RNA" FT /db_xref="taxon:170965" FT gene 360. .2486 FT /gene="cap" FT CDS 360. .2486 FT /codon_start=1 FT /gene="cap" FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:Q8V616" FT /protein_id="AAL37369.1" FT /translation="MSAPEPLNTEVRSPNGVSEAIETQNMAVTQSSVSNEIKNDTQSDL FT QTLKKQLQPLYRSTDFNTLYNFFYGLDVPASTDRVGHAIQRNTSVNDTNEVVSFPLTAT FT VSHTFSNTPVPANIQPLQISVADDSVNYELDESGTLCPTLDSSVHVQRATSLASALKVK FT LTGEIMHSDSVRPVQTPQLIAYLFGVLLGVKDRVNIHRNQPTNLWRSLCSPGRAAQAKP FT FFDEFPNNKFRTGALLAPPLPDAGFGPFPAEGLNQNSKLDFRSKGYVFYKQRTYNPDEM FT NRAFWFLWAIYNRMPEDFQLSYPLNITFCTSELPVQNPMPGADAISNEQCEKALLLLEK FT VVLEFFNNDRKLAYYYVFKGCQFVMRPCSCYQEGGLIRKASRNVALRGFTGIYYLAGFT FT DQYANMISCAVHPGVVGALFQYVDTMVLQAVFSLSGPKLVRFAAPPEYQGRHACPFSFV FT ADENYWGIAPGIEAEPVGMYYMDIIQRKAEHDLFIETFMDIYGSTASIICANIETSLFT FT SGTNVLNHRMQKDFARDTPKPGTLRHQHAIINRFHEPEYAYRLGILANGVIPLSGSFEV FT DILKEAELLVTGEDIRNLPGLRCLCTRGLDAILGLRPVQQKRKKMCYFRTLDGNFHEVT FT IRSETRDLQVWRDHGYLARPYACHIIDSEGIEFYDKSNGLYKGRVNVLVSGFAIPGRAY FT QGPRLQVATMAAQI" FT gene 2645. .4690 FT /gene="pol" FT CDS 2645. .4690 FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /note="translated via ribosomal frameshift" FT /db_xref="GOA:Q8V615" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q8V615" FT /protein_id="AAL37370.1" FT /translation="MDHVSDIAYLNFLRWVLLPYNGQTLRPHPSVWRQTPYPEHVNLKF FT LNKEMELELFPLKKAPQADLKVNCYARNVLASTELTDDLLKQSLPIGLNNDSVCGIVIV FT LELLRIAGVPSKLLPIIGQAIANKDPFIKELSDFNKMIGATTSRIANILTECNTLIGRG FT VKSSDPSADLYHRVAPEGNRHEAKIPRHILIEAINKIYKNEMTDMPPPGDFKLHLITSP FT LWCKAGSHHHPHFAKYSSRLDFVMDVPADKIAAVPPSVFITQAEKLEHGKTRYIYNCDT FT XSYLFFDYILHYVECVWSNESVLLNPAAMSVERFSVLDYPEYCMIDYTDFNSQHSLESQ FT KLVFECLRPYLPSEMHPILDWCIASMDHMEIGGQHWLSTLPSGHRATTFINSVLNKAYL FT IPYIGDTTSFHCGDDVLLCGKYDYQTLIDTLPYELNKSKQSFGPNAEFLRLHRRAGDVI FT GYPSRAVSSLVSGNWLSKTSWEWQPSLISVTNQCNVIISRSQLNIRFIPAMQQELRNRY FT IDKMSEPFDVGSDYYVMPGCPCYSDAATTIVPNVPQLECSDVPFSQAQKVFDTMRDICP FT EFTTVNDVIDRVLARRTSNAVKNITYNVCAPVAPQVCIAVNPAHYQFLLRKKYYPREHI FT APPGFDDSTNSKLVFSTYDLAPSIAMKSCAVLTPAKIICGHGLRSG" XX SQ Sequence 4844 BP; 1270 A; 1287 C; 1025 G; 1258 T; 4 other; af325840 Length: 4844 04-MAR-2011 Type: N Check: 1994 .. 1 cttaaaaagc ctagtccact ttttaagccg gttagacttc accgtagata 51 cttgggcaaa attaatcaac accctcctgg aatcgccggg gtgttgcgag 101 ccgtaagaga ccggttctaa aggactgaca tagcgccgcg agggtaggtg 151 gtcgatagcc cgtttgacgg agtagcgata ttcctgattc tggtgtagca 201 tcgacggggg ccccctagcg tgagctcagc acgttgtgaa aacgaaaaac 251 tgcatgtctg aggcttcgca gtagcgtgag ctcggagcac cctaaaaagt 301 gctctgtttt gtaacagcca acgattgtta cgaaactcta gtgtattgcg 351 tgcaacggta tgtcagctcc cgagccctta aatactgaag tacgctcacc 401 taatggtgtt agtgaagcca tagaaactca aaacatggct gtcactcaaa 451 gcagtgtgtc aaacgaaatt aaaaatgaca cacaaagtga tctgcaaaca 501 cttaaaaaac agttacaacc gctctacaga tccacagatt ttaatactct 551 ttataatttc ttttatggtt tagatgtccc agcttcaaca gatcgcgtcg 601 gtcacgctat ccagcgtaac acctcagtca atgatacaaa tgaagttgtt 651 agtttccctc ttacggcgac ggtatcacac acgttttcaa acacgccagt 701 tccagccaac atacagcctc ttcaaatctc agtagccgac gattcagtca 751 actatgagct cgatgaaagt ggaacattat gtccaacgtt agatagctcc 801 gtccatgtcc aaagagccac ttccttggcc agcgctctca aggtcaaatt 851 aacgggcgaa atcatgcact ctgactcagt cagaccagtc caaactccac 901 aattgattgc ttatttattc ggcgtcctcc tcggtgtcaa agatcgcgtc 951 aacattcacc gcaatcaacc cactaactta tggagaagtt tatgttcgcc 1001 tggtcgtgct gctcaggcaa agcctttctt cgatgaattt ccaaacaaca 1051 agttcaggac cggtgctctt ttggcacctc ctctccccga tgccggcttc 1101 ggtcctttcc cagctgaagg ccttaaccaa aattccaagc ttgattttag 1151 atcaaaggga tacgtcttct acaaacaacg cacttacaat ccagacgaaa 1201 tgaaccgtgc gttctggttc ctttgggcga tctacaatcg tatgcctgaa 1251 gatttccaac tatcataccc attaaacatt accttctgca cttccgaatt 1301 gccagtccaa aacccgatgc caggggccga cgcaatctca aatgagcaat 1351 gtgaaaaagc gctccttctc ctcgaaaaag tcgtcctcga attcttcaac 1401 aatgatcgca aactcgctta ttattacgtt ttcaaaggat gccagttcgt 1451 tatgcgccct tgctcctgct accaagaagg aggcttgatc cgcaaagcct 1501 cacgcaacgt tgccctccgt ggcttcaccg gtatctatta tttggccggc 1551 ttcacagatc aatacgccaa catgatttca tgtgctgttc acccaggtgt 1601 tgttggcgct ctcttccaat acgtcgatac gatggtttta caagcggttt 1651 tctccctctc tggcccaaag ttggtccgct tcgccgctcc gcctgaatat 1701 caaggtcgcc acgcttgtcc tttctcattt gtcgccgacg aaaattactg 1751 gggcattgct ccgggtattg aagccgaacc cgtcggcatg tattacatgg 1801 acatcatcca acgcaaggcc gagcatgatt tgttcatcga aaccttcatg 1851 gatatctacg gttcaacagc ttccatcatt tgcgccaata tcgaaacgag 1901 cttattcacc tctggcacta acgtcttgaa ccatcgcatg caaaaagact 1951 tcgctcgcga cactcctaag ccaggaaccc tccgtcatca acacgccatc 2001 atcaaccgct tccacgaacc tgaatacgcc taccgccttg gcatccttgc 2051 taatggtgtt atccctctca gcggctcatt cgaggtcgat atcctcaaag 2101 aagctgagct tctcgtcaca ggtgaagata tccgcaatct ccctggttta 2151 cgttgcttgt gcacacgcgg ccttgatgca atcctcggtc tccgcccagt 2201 ccagcagaag cgcaagaaga tgtgttactt ccgcactctc gatggcaact 2251 tccatgaagt aacaatcaga tcagagacgc gcgatttaca ggtctggcgt 2301 gatcacggct accttgctcg tccatacgcg tgccatatta tcgattcaga 2351 aggcatagaa ttctacgaca aatccaacgg tctctataag ggccgtgtca 2401 atgtccttgt ttctggattt gccatcccag gtcgcgcgta tcagggccct 2451 cgcttgcagg tagcaacaat ggccgcccag atctaagcga cgtcccggcg 2501 acaggaagtc tgtccaacct cattaccctt tccaaagcaa gtcggctacc 2551 ataccgtaag ctgagggaag gcgtgagagc gtcagactac accgtcgccc 2601 gcgagttagc tagcgccttt cgcaattctc gcctaactcg ccaaatggat 2651 catgtctcag atatagctta tcttaatttc ctgagatggg tgttgttacc 2701 ttacaacggt caaacattac gaccacaccc cagcgtgtgg cgtcagacac 2751 cctaccccga acatgtcaat ttgaagttcc tgaacaagga aatggagctc 2801 gaactcttcc cacttaagaa ggccccacaa gccgatctta aagtgaactg 2851 ttacgcgcga aacgtccttg cttccacaga gctaaccgac gacttactca 2901 agcagagttt acccataggt ctcaacaatg actcagtttg tggaatcgtc 2951 atcgttttag agctgcttcg gattgcaggt gttccaagta agttactacc 3001 aattattggc caagctattg ccaataaaga tccattcatt aaggaattgt 3051 ccgatttcaa caagatgata ggagcgacga cttcccgtat tgctaacatt 3101 ctcacagagt gcaatacatt gataggtcgc ggtgttaagt catctgatcc 3151 aagtgccgat ttgtatcacc gggtagcgcc tgagggcaat aggcacgagg 3201 cgaagattcc tcgacacatc cttatcgaag ccataaacaa aatctacaaa 3251 aacgaaatga cagacatgcc tccaccagga gatttcaagc tccacttaat 3301 aacgagcccc ctatggtgta aggctggttc tcatcatcat ccacacttcg 3351 ccaagtatag ttcacgcttg gatttcgtta tggatgttcc agcagacaaa 3401 attgctgctg taccaccctc ggttttcatc actcaagcgg agaaattgga 3451 acacggtaag actaggtaca tttataactg tgacacantt tcttacctgt 3501 tcttcgatta catcctacat tatgtcgaat gtgtgtggtc aaacgagtca 3551 gtcttgctca acccagctgc tatgagtgtt gagcggttta gcgtcctaga 3601 ctatccggag tattgcatga tcgattacac agatttcaat tctcaacaca 3651 gccttgaatc ccagaagctt gtattcgagt gtttgagacc gtacttgcca 3701 agcgaaatgc atccaatctt agattggtgt atcgctagca tggaccacat 3751 ggaaattggc gggcaacatt ggttaagcac gttgccttcg ggacatagag 3801 ctactacgtt tatcaactca gtcctgaata aagcatacct gattccttac 3851 ataggcgaca ccacctcttt ccattgcggt gacgacgtat tactatgtgg 3901 yaaatacgac tatcagacac tcattgatac cctaccctat gaattaaaca 3951 agagcaaaca gagctttgga cctaatgccg agttcttgcg cttgcatagg 4001 cgtgcgggtg acgtgatagg ctacccatca agggctgttt cgagtctcgt 4051 atctggaaat tggttaagta agacttcatg ggaatggcag ccaagtctca 4101 tttcggtcac gaatcaatgc aatgtgatca tctcacgctc acagttaaac 4151 atcaggttca tccccgctat gcagcaggaa ctacgcaatc gttacataga 4201 taaaatgagc gagcccttcg atgtcggctc ggattactac gtcatgccag 4251 gttgtccatg ttatagtgat gccgcgacaa caatcgttcc gaatgttccc 4301 caactggaat gttccgacgt accgttttcg caggcacaaa aggtttttga 4351 tactatgcgc gacatctgtc ctgagttcac cacagtcaac gacgtcatcg 4401 acagagttct agctcgtcgg acttccaatg ctgtcaaaaa catcacgtac 4451 aatgtttgtg ctcctgtagc acctcaagtt tgcatagccg taaacccagc 4501 acattaccaa tttctgttac gtaagaagta ctacccacgt gaacacattg 4551 cgccccccgg ctttgatgat tcaacgaact ctaagcttgt tttytcgact 4601 tacgatctag ctccttcaat tgctatgaaa tcgtgcgctg ttttgacccc 4651 ggcaaagata atatgcggtc acggactacg cagtggttga ttyagcacgc 4701 tagtaccgcg cgacagtcgg taccgtctag gccacgtaca gtctattgtc 4751 ctcggaccct ctgcctatag gttaatagga atacagtgtt actgttgtgt 4801 gtatcgctct aggcacacga acgtgctacc ccacgtttag ttca