Sequence of DPV Maize streak virus
Maize streak virus - A[MatB], complete genome.
ACC No: AF329882
Dated: 2005-04-15 | Length: 2689 | CRC: 120523384
!!NA_SEQUENCE 1.0
ID AF329882 standard; circular genomic DNA; VRL; 2689 BP.
XX
AC AF329882;
XX
SV AF329882.1
XX
DT 19-JUL-2001 (Rel. 68, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE Maize streak virus - A[MatB], complete genome.
XX
KW .
XX
OS Maize streak virus - A[MatB]
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN [1]
RP 1-2689
RX DOI; 10.1006/viro.2001.1075.
RX MEDLINE; 21488909.
RX PUBMED; 11601896.
RA Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B.,
RA Njuguna J., James D., Rybicki E.P.;
RT "Sequence diversity and virulence in Zea mays of Maize streak virus
RT isolates";
RL Virology 288(2):247-255(2001).
XX
RN [2]
RP 1-2689
RA Martin D.P., James D., Rybicki E.P.;
RT ;
RL Submitted (20-DEC-2000) to the EMBL/GenBank/DDBJ databases.
RL Microbiology, University of Cape Town, Private Bag, Cape Town, WC 7000,
RL South Africa
XX
FH Key Location/Qualifiers
FH
FT source 1. .2689
FT /country="Zimbabwe"
FT /db_xref="taxon:268324"
FT /mol_type="genomic DNA"
FT /note="isolated in 1994 from severely infected maize
FT subtype: MSV-A1"
FT /virion
FT /organism="Maize streak virus - A[MatB]"
FT /strain="MSV-A"
FT /isolate="MSV-MatB"
FT misc_feature join(2682. .2689,1. .2)
FT /note="conserved nonanucleotide at origin of (+) strand
FT replication"
FT stem_loop 20. .2662
FT gene 150. .455
FT /gene="V1"
FT CDS 150. .455
FT /codon_start=1
FT /db_xref="InterPro:IPR002621"
FT /db_xref="UniProt/TrEMBL:Q77JB8"
FT /note="MP; facilitates intercellular movement of viral DNA"
FT /gene="V1"
FT /product="movement protein"
FT /protein_id="AAK73443.1"
FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT gene 466. .1207
FT /gene="V2"
FT CDS 466. .1200
FT /codon_start=1
FT /db_xref="GOA:Q91MI3"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="UniProt/TrEMBL:Q91MI3"
FT /note="nuclear localized ss/ds DNA binding protein"
FT /gene="V2"
FT /product="coat protein"
FT /protein_id="AAK73444.1"
FT /translation="MSTSKRKRGDDSSWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL
FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT polyA_signal 1203. .1207
FT /gene="V2"
FT gene complement(1213. .2527)
FT /gene="C1/C2"
FT polyA_signal complement(1213. .1219)
FT /gene="C1/C2"
FT primer_bind 1277. .1352
FT /note="origin of (-) strand replication"
FT CDS join(complement(1886. .2527),complement(1353. .1793))
FT /codon_start=1
FT /db_xref="GOA:Q91MI2"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001146"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="UniProt/TrEMBL:Q91MI2"
FT /note="replication initiator/associated protein; required
FT for initiation and termination of viral DNA replication"
FT /gene="C1/C2"
FT /product="Rep"
FT /protein_id="AAK73446.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPY
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQSSDERSRK
FT QSLYIVGPTRTGKSTWARSLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKFCPCWKQLV
FT GCQRDFIVNPKYGKKKKVQKKSKPTIILANSDEDWMKEMTPGQLEYFEANCVIYIMSPG
FT EKWYSPPELPPTEAVHSDRS"
FT gene complement(1709. .2527)
FT /gene="C1"
FT CDS complement(1709. .2527)
FT /codon_start=1
FT /db_xref="GOA:Q91MI1"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001146"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="UniProt/TrEMBL:Q91MI1"
FT /note="replication initiator/associated protein ORFA;
FT possibly involved in cell cycle regulation"
FT /gene="C1"
FT /product="RepA"
FT /protein_id="AAK73445.1"
FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPY
FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML
FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA"
FT repeat_region 2595. .2602
FT /note="iteron"
XX
SQ Sequence 2689 BP; 681 A; 637 C; 694 G; 677 T; 0 other;
AF329882 Length: 2689 April 19, 2005 08:54 Type: N Check: 6224 ..
1 accgcgcctt cttttcctgc gagggcccgg tagggcccga gcgatttgat
51 gtaaagcttg gtcctgcttt gtatgattta tctaaagcag cccattctaa
101 agaaaccggt cccgggcact ataaattgcc taacaagtgc gattcattca
151 tggatccaca gaacgccctg tattatcagc cgcgggtacc cacagcagct
201 ccggcatccg caggagtgcc gtggagtcgc gtaggcgagg tagctatttt
251 gagctttgtt gcactgattt gcttttacct gctttacctt tgggtgctga
301 gagaccttat cttagttctg aaggctcgac aaggcagatc cacggaggag
351 ctgatatttg gaggacaagc tgtggatagg agcaacccta tccctaatct
401 accagcacca ccaagtcagg gcaatcccgg gccatttgtt ccaggcacgg
451 gataagcatt cagccatgtc cacgtccaag aggaagcggg gagatgattc
501 gagttggagt aagcgggtta ctaagaagaa gccctcttca gctggtctga
551 agagggctgg cagcaaggcc gataggccat ccctccaaat ccagacactc
601 cagcatgctg ggaccaccat gataacggtc ccatccggag gagtatgtga
651 cctcatcaac acctatgccc gaggatctga cgagggcaac cgccacacca
701 gcgagactct cacgtacaag atcgccatcg actaccactt cgttgccgac
751 gcggcagcct gccgctactc caacaccgga accggtgtaa tgtggctggt
801 gtatgacacc actcccggcg gacaagctcc gaccccgcaa actatatttg
851 cctaccctga cacgctaaaa gcgtggccgg ccacatggaa ggtgagccgg
901 gagctgtgtc atcgcttcgt ggtgaaacgg cgatggttgt tcaacatgga
951 gaccgacggg cggattggtt cggacattcc tccctcgaat gcaagttgga
1001 agccttgcaa gcgcaacatc tacttccaca agttcacgag cgggttggga
1051 gtgagaacgc agtggaagaa tgtaacggac ggaggagttg gtgccatcca
1101 gagaggagcg ttgtacatgg tcattgcccc cggcaatggt cttacattta
1151 ctgcccatgg gcagacccgt ctgtacttta agagtgttgg caaccagtaa
1201 tgaataaaaa ctcccgtttt attatatctg atgaatgctg aaagcttaca
1251 ttaatatgtc gtgcgatggc acgaaaaaac acacgcaatc aatacagggg
1301 ggtagtaggc gggcggctaa gggtggtgct cggcgggcag aacatcgaaa
1351 aatcaagatc tatctgaatg tactgcctcc gtaggaggca gctcaggggg
1401 agaataccat ttctcccccg gcgacataat gtaaatgacg cagtttgcct
1451 cgaaatactc cagctgccct ggagtcattt ccttcatcca atcttcatcc
1501 gagttggcga ggattattgt aggcttagac ttcttctgca ccttcttctt
1551 cttaccatac ttggggttta caatgaaatc cctctgacag ccaactaact
1601 gtttccaaca aggacagaat ttaaacggga tatcatctac gatgttgtag
1651 attgcgtctt cgttgtatga agaccaatca acattatttt gccagtaatt
1701 atgaacccct aggcttctgg cccaagtaga ttttcctgtt cttgttgggc
1751 cgacgatgta gaggctctgc tttcttgatc tttcatctga tgactggata
1801 cattatccat ccattggagg tcagaaattg catcctcgag ggtataacag
1851 gtaggttgaa ggagcatgta agcttcggga ctaacctgga agatgttagg
1901 ctggagccaa tcattgattg actcattaca aagtaaatca ggtgaggatt
1951 gcggatgagg attggtgaac tcttcctgaa tctcaggaaa aagcttattt
2001 gcagagtatt caaaatactg caattttgtg gaccaatcat agggaagctc
2051 tttctggatc atggagaggt actcttcctt ggaagtagag tgtgaaataa
2101 tgtctcgcat tatttcatct ttggaaggct ttttttcctt aacttctgaa
2151 tcagattttc ctaggaaggg ggacttccta ggaatgaaag tacctctctc
2201 aaacatagcc agaggttcct tgaggatgta atccctcacc ctgtttactg
2251 acttggcact ctgaatgttt gggtgaaacc cattaatatc aaagaacctt
2301 gagtccgata ttcttaccgg cttctctgtt tgaagcaatg catgtaaatg
2351 caaacttcca tctttatgtg cctctcgggc acatagaatg tacttgggaa
2401 tccaacgaac aacgagctcc cagatcatct gacaggcgat ttcaggattt
2451 tctggacact ttggataggt gaggaacgtg ttagcgttcc ggtgtgagaa
2501 ctgacggttg gatgaggagg aggccatagc cgacgacgga ggttgaggct
2551 gagggatggc agactgggag ctccaaactc tatagtatac ctgtgcgcct
2601 tcgaaatccg ccgctccctt gtcttatagt ggttgtgaat gggccggacc
2651 gggtcggccc agcaggaaaa gaaggcgcgc actaatatt