Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate TAM11 coat protein gene, complete cds.
ACC No: AF342890
Dated: 2009-09-05 | Length: 672 | CRC: -1737796101
ID AF342890; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC AF342890; XX DT 30-MAR-2001 (Rel. 67, Created) DT 05-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Citrus tristeza virus isolate TAM11 coat protein gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RC Publication Status: Online-Only RP 1-672 RX PUBMED; 19642988. RA Herrera-Isidron L., Ochoa-Sanchez J.C., Rivera-Bustamante R., RA Martinez-Soriano J.P.; RT "Sequence diversity on four ORFs of citrus tristeza virus correlates with RT pathogenicity"; RL Virol. J. 6:116-116(2009). XX RN [2] RA Herrera-Isidron L., Villarreal-Garcia L.A., Rivera-Bustamante R., RA Martinez-Soriano J.P.; RT "Molecular Analysis of Citrus tristeza virus from Mexico"; RL Unpublished. XX RN [3] RP 1-672 RA Herrera-Isidron L., Villarreal-Garcia L.A., Rivera-Bustamante R., RA Martinez-Soriano J.P.; RT ; RL Submitted (26-JAN-2001) to the EMBL/GenBank/DDBJ databases. RL Departamento de Biotecnologia y Bioquimica, CINVESTAV Irapuato, km 9.6 lib. RL norte Carr. Irapuato-Leon, Irapuato, Guanajuato 36500, Mexico XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /isolate="TAM11" FT /mol_type="genomic RNA" FT /country="Mexico:State of Tamaulipas" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q990P2" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q990P2" FT /protein_id="AAK27476.1" FT /translation="MDDETKKLKNKNKEAKEGDDVVAAESSFGSMNLHIDPTLIAMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVDVDLPDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 198 A; 128 C; 166 G; 180 T; 0 other; af342890 Length: 672 05-SEP-2009 Type: N Check: 2486 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aagcgaaaga 51 aggcgacgac gttgttgccg ctgagtcttc tttcggttcc atgaacttac 101 acatcgatcc aactctgata gcgatgaatg acgtgcgtca gttgggtacc 151 caacagaacg ctgctttaaa cagagactta tttcttactt tgaaagggaa 201 atatcctaac ttacctgaca aagataagga ctttcacata gctatgatgt 251 tgtatcgttt agcagttaaa agttcatcat tacaaagcga tgacgacact 301 acgggtataa cgtacactcg ggagggtgtt gatgtggatt tgcctgacaa 351 actttggact gacgtcgtgt ttaactccaa gggtattggt aaccgtacta 401 acgcccttcg agtttggggt agaactaacg atgcccttta cttagctttt 451 tgtagacaga atcgcaattt gagttatggc ggacgtccgt tagatgcagg 501 gattccggcc gggtatcact acctgtgtgc agatttcttg accggagctg 551 gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg 601 ttgaagaagc gaggagctga tgaagtcgta gttaccaatg tcaggcagct 651 tgggaaattt aacacacgtt ga