Sequence of DPV Eimeria brunetti RNA virus 1

Eimeria brunetti RNA virus 1, complete genome.

ACC No: AF356189

Dated: 2001-03-29 | Length: 5358 | CRC: 747289175

                !!NA_SEQUENCE 1.0
ID   AF356189   standard; RNA; VRL; 5358 BP.
XX
AC   AF356189;
XX
SV   AF356189.1
XX
DT   29-MAR-2001 (Rel. 67, Created)
DT   29-MAR-2001 (Rel. 67, Last updated, Version 1)
XX
DE   Eimeria brunetti RNA virus 1, complete genome.
XX
KW   .
XX
OS   Eimeria brunetti RNA virus 1
OC   Viruses; dsRNA viruses; Totiviridae.
XX
RN   [1]
RP   1-5358
RA   Fraga J.S., Katsuyama A.M., Fernandez S., Madeira A.M.B.N., Briones M.R.S.,
RA   Gruber A.;
RT   "The genome of the Eimeria brunetti RNA virus 1 is more closely related to
RT   fungal than to protozoan viruses";
RL   Unpublished.
XX
RN   [2]
RP   1-5358
RA   Gruber A., Fraga J.S., Katsuyama A.M., Fernandez S., Madeira A.M.B.N.;
RT   ;
RL   Submitted (05-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Pathology, Faculty of Veterinary Medicine and Zootechny - University of Sao
RL   Paulo, Av. Prof. Orlando Marques de Paiva 87, Sao Paulo, SP 05508-000,
RL   Brazil
XX
DR   SPTREMBL; Q98XW8; Q98XW8.
DR   SPTREMBL; Q98XW9; Q98XW9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .5358
FT                   /db_xref="taxon:155414"
FT                   /note="Eb-RV1"
FT                   /virion
FT                   /organism="Eimeria brunetti RNA virus 1"
FT   5'UTR           1. .357
FT   CDS             358. .2670
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q98XW9"
FT                   /evidence=NOT_EXPERIMENTAL
FT                   /note="capsid protein; ORF1"
FT                   /product="coat protein"
FT                   /protein_id="AAK26437.1"
FT                   /translation="MSIGTSNALRTRTNCGRKMDSGYKISCLLGEVVPGGARVEVPTFG
FT                   NYRKYMSRLEMRACTRGLPQSTYCPIQFEVGAAFNLGTCAKNFKRETWLQHVMREGPML
FT                   GCSYATPVEVRKVLKEERFRQVGQAEWLTFNFDAIVCVLGAVAATLTLVPDLSTADWRN
FT                   TSPSVRGLVSVEDLHAANSGGVVYYDPCALGIHAECAKWLMIYAANVCGATVVVPHLTL
FT                   DVNNRPICKDYDGAELRRGLSVLLNILGTYYSMANAGDMYALALMTGVHRVLTVVGHSD
FT                   EGGWLRDVLRQGWWQQPHGGVPRSLPFSSGISVDDGRTLGTFVALVDSIALGTAAAVAH
FT                   CDPLVPVGDNVFPTVFTVDLPEDGELANGVMQRLMARTIADGCAKFSELYATALAKLFR
FT                   LHVNVTELHAAGVLQQMASYFAESGSRHTDMAVCHPFFWIEPTTVLPAGEFGFPAEIYG
FT                   YASLCHATQRRTMPFFEAIEEEGLSDTVVSHWRVRIRSPRTCGYVLYTTNHPKNGLANL
FT                   LLRGFNSSALVLGTKSPEEIRCKKAAKGFVTFADLMWKRGQAKLPHPAEVLNVDGTFTV
FT                   SILHAAITTRHYQKPIEHIPPPEDLSRMYLTLHATRLAYYKAGPANVEPGGVRRLRNMG
FT                   VDAINDMNGVVQNTMLRMSSFPPPSETAPVLNKPGRAFGGAAAAVSERCVEPVRGDAAE
FT                   ESPPRVAQGQAVEATMVHASAPAPQPHRGPGPSDGGGGLGGHRDLVAGVGDATAVAAGA
FT                   VTVPESGSRQTASATQQ"
FT   CDS             2667. .5321
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q98XW8"
FT                   /evidence=NOT_EXPERIMENTAL
FT                   /note="ORF2"
FT                   /function="involved in dsRNA replication"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="AAK26438.1"
FT                   /translation="MMTELLPRLTPVVAADEMGELYLRTTFPRPPLAGTFNDTGLFPVM
FT                   YAETASLQHAVRRILRHGPLSLTQSECLARSTFTAVGDEAVLCRRAEEAFWDLLLASEW
FT                   PMHVAPVPWLLKHVVTLIARGLKQSLLEHRIPGGWIKHIRNGRSPSKEWLLGYWPRKSH
FT                   PLAGKKANLFLDCVIADFLQNYKCLGPVLEGWMKRTHLLGIYEDQACNIIVYAQAVMLE
FT                   FGFEESLYLATWAVLRAKQAKALSDVLKAMGQNMCAVGRHLCELAVLQGRGVNRLDLLE
FT                   DAERRVSATFNCPIVHVPADALRQCVRDVLRRELRTRVVLPPSDDFFRRRYAWCVGGAH
FT                   NLNGNDHWLPRSLLPQFPAALLWNRRAALNCVERNPLKRWSGHVRVSVAEKVEQGKGRA
FT                   IYSCDTLSYTAFSWLLEAVEKEWASRSVILNPGKGGTLGMMNRIRGAATGGRRQCYLML
FT                   DYSDFNSQHSNEAMRIVIEETLACCDHNEPELAAKLLKSIDDMHIYLRGVHIGRVAGSL
FT                   MSGHRATTYWNSVLNAAYVRYAIGRVAYDTYKPFHVGDDVLILLDSPADAWNVVKKLEH
FT                   IGCTLQRSKQSVGIGGYEFLRVAGSPFTGVGGYVARSVAGLVSGSWVSSVKMAPREALQ
FT                   SLIQQARSIMNRSGNPAAYKLLISSARRTIGIDQQYLEEFLSGNVALAPGPCYRSDRRY
FT                   VARHVEWESSADDPYGGGRLLIGGIEIEKLPNHAARDYVNWAASEVERVGLAMVGRVPW
FT                   RAMALTAYAAMEPSLYGNPSGGVRAAYISPRTVRLIDHYIDAADITTTDSQHGILAQYP
FT                   LLSLLRNYFSMEDLTYLLNFVGRDAGIDARVTAWGGTNEGICVCGLLPYADAAGAASRV
FT                   LGNAIHVSVPVAV"
FT   misc_feature    2667. .2670
FT                   /note="overlap between ORF1 and ORF2"
FT   3'UTR           5322. .5358
XX
SQ   Sequence 5358 BP; 1132 A; 1316 C; 1690 G; 1220 T; 0 other;

AF356189  Length: 5358  December 21, 2001 15:32  Type: N  Check: 8028  ..

       1  tgaatgaaaa gcgcgagcgc ggcgtcgtgt cgaccgcttt tctgatcctg
      51  ctggttgctg gaccaatacc catcagtagc aggcaggggg agtgcctcga
     101  gtcacagtta acgtcggctg tgtcacgacg gtcagctcct agtaaattgc
     151  ataggagttc accctgtgta ttcgccctgc ggggtggtac actggaacca
     201  cggtccctta gcccagggat agcgccgtgg ggggatcgca tgagggcgta
     251  gttagggttc tgctattcag acgtacgcac attaagtgta gtaggccgtc
     301  atgtggtggt aagcctaccg ctggtaccgg ggtacagcgc ctacgaccta
     351  caagctcatg tcgataggaa cttccaatgc cttgcgcacg agaacgaatt
     401  gcggacggaa gatggattcg ggttataaga tctcgtgttt attgggagag
     451  gtcgttcccg gtggcgcccg ggtggaggtt ccgacttttg gcaattatcg
     501  taaatacatg tcgcgtcttg agatgcgagc ctgcacgcgt ggtctacctc
     551  aatcgacgta ctgtcctata cagtttgagg ttggagcagc gtttaatctc
     601  ggcacatgtg ccaagaactt taagcgagag acttggcttc agcatgtcat
     651  gcgtgagggg cctatgttgg gctgctcgta tgctacaccg gttgaggtca
     701  ggaaggtact caaggaggag aggttcaggc aggttggcca ggcagaatgg
     751  ctgactttta acttcgacgc cattgtgtgt gtgctgggcg cagtggctgc
     801  tacgttgacg ttggtgcctg acctctcaac tgcggattgg cgaaatacga
     851  gcccttcagt acggggtctt gtgtcggtgg aagacctcca tgctgccaat
     901  tcggggggcg ttgtgtatta tgatccgtgc gctttgggca tccacgcgga
     951  gtgcgcaaaa tggctaatga tctacgcggc caacgtgtgc ggagcgaccg
    1001  ttgtggtgcc gcacttgaca ctggacgtaa acaatcgccc gatatgcaaa
    1051  gattatgatg gagcggaact gcgtcggggg ctttcggtcc tgctcaacat
    1101  attgggcacg tactactcta tggcaaatgc gggtgatatg tatgcgttgg
    1151  ccctgatgac aggggtgcac agagttctga ccgtcgtcgg gcacagtgac
    1201  gagggaggtt ggctgcgcga tgtgctgcgt cagggttggt ggcagcaacc
    1251  acatgggggc gtgccacgat ctttgccttt cagttcgggc atatctgtgg
    1301  atgatggccg cactttggga acattcgttg ctttggtgga cagtatcgct
    1351  ttaggtacgg cggctgcagt cgcccattgc gacccgctcg tacctgtggg
    1401  agacaacgtt tttcctactg tgtttactgt cgacttgcct gaagacggtg
    1451  agctggctaa cggtgtcatg cagagattga tggcccgcac gattgctgat
    1501  gggtgtgcca agttcagcga actatacgct actgcgctag ctaagctttt
    1551  tcggctacac gtcaatgtga ctgagttgca cgctgctggc gtattacagc
    1601  agatggcaag ttactttgcg gaaagtggct ccagacacac ggacatggca
    1651  gtgtgtcacc ccttcttttg gatagagccc acgacggtgt tgcctgctgg
    1701  tgagttcggt ttccccgcgg agatctacgg gtatgcaagc ttgtgtcacg
    1751  ccacccagcg gcgaaccatg ccgtttttcg aggcgataga agaggagggc
    1801  ctcagtgata cagtggtgag tcactggcgc gtacggatac gcagtccgcg
    1851  cacctgtggg tacgtacttt acaccacaaa ccatccgaag aacggactgg
    1901  ccaacttgct gctccgaggt ttcaacagca gtgcgttggt gctgggtact
    1951  aaatctcctg aagagatcag atgtaagaag gcggcaaaag gctttgttac
    2001  ctttgctgac ttgatgtgga agcgcggaca ggccaaacta ccgcatccag
    2051  cagaagttct taatgttgat ggaacgttta ctgtgagtat cttacatgct
    2101  gcaataacta cacgccacta ccagaaaccg attgaacaca tacccccacc
    2151  agaagattta agtaggatgt atctaacatt acacgctacc agactggctt
    2201  actataaggc tgggcctgcg aacgtagagc ccgggggtgt gcgtcggttg
    2251  cgtaacatgg gtgttgacgc gatcaacgat atgaacggtg tggtgcagaa
    2301  cacgatgctg cggatgtcga gttttccccc gccgagtgag acggcgcccg
    2351  tgctgaacaa gccaggccgg gcctttggcg gggctgctgc ggccgttagt
    2401  gagcggtgtg ttgagccagt gcgcggcgac gcagctgagg agtcgccacc
    2451  gcgtgtggcg caaggccaag ccgtagaggc caccatggtt cacgcgagcg
    2501  caccggcacc gcagccacac cggggaccgg gtcccagtga cggtggcgga
    2551  ggtctcgggg gacaccggga cctagtcgcg ggagtgggtg atgctacagc
    2601  cgttgcggcg ggggcggtaa cggtacctga gagcggtagc cggcaaactg
    2651  cctccgccac acagcaatga tgactgagct gctgccacga ctgacccccg
    2701  tcgtggcggc tgacgagatg ggggaactct atttaaggac aacctttccg
    2751  cggcctccat tggctgggac ctttaacgac acagggttat tcccagtcat
    2801  gtacgcggag acagcgagtc tgcaacacgc ggtccgtcgc atcttacgac
    2851  acgggccgct gtctttgact cagagcgaat gcctcgcccg ctcaacattc
    2901  accgcagtcg gggatgaggc cgtgttgtgt aggcgcgcgg aggaggcgtt
    2951  ttgggactta ctgttagcca gcgagtggcc aatgcatgtg gcaccggtgc
    3001  catggctgct gaagcatgtt gtgactttga ttgctagggg cctaaaacag
    3051  tccttgttgg aacatagaat tccaggcggc tggattaagc atatcagaaa
    3101  tggacggtct ccaagcaagg agtggctgct gggctactgg ccacgcaagt
    3151  cacaccccct ggccggcaag aaagcgaact tatttttgga ctgtgtgatc
    3201  gctgacttcc tacagaacta caagtgcctg ggccctgttt tggagggttg
    3251  gatgaaacgc actcacttgt tgggtatata tgaagatcag gcgtgcaaca
    3301  tcattgttta tgcgcaggcc gttatgctcg aatttggctt cgaggagagc
    3351  ttgtatctag ccacatgggc agtattgagg gccaagcaag ctaaagcgtt
    3401  gtctgatgtt ctgaaggcaa tgggccagaa catgtgtgcc gttgggcgcc
    3451  acttatgcga actcgcggtg ttgcagggac gcggcgtcaa caggctggac
    3501  ttgcttgagg acgctgagcg ccgggtcagt gcgacattca actgtcccat
    3551  agtgcacgtc ccagcggacg cgttgagaca gtgcgttcgt gacgtcctca
    3601  ggagagagct gagaacgcgt gtggtgctgc cgcccagcga cgatttcttc
    3651  cgtcgtcgct acgcctggtg tgtgggtggc gcacacaatc ttaatggcaa
    3701  cgatcactgg ttgccgcgct cgctgctgcc ccagttcccg gctgcgttgc
    3751  tgtggaaccg cagagctgct ctcaactgcg tcgaacgtaa cccgctcaag
    3801  aggtggtcgg ggcacgtgcg ggtgtcggtt gccgagaaag ttgaacaagg
    3851  gaagggtcgt gccatttact cgtgtgacac gctaagctat acggcgttta
    3901  gttggttgct agaggctgtg gaaaaagaat gggcatcacg ctctgtgata
    3951  ctgaaccccg gcaagggtgg caccttaggg atgatgaaca ggatcagagg
    4001  cgctgcgacc gggggcagac gtcaatgcta cttgatgctg gattactctg
    4051  actttaactc ccaacactcg aatgaggcta tgcggattgt gatagaggag
    4101  acgttggcct gctgcgacca caacgagcct gagcttgcgg ccaaattgtt
    4151  gaagtcgatc gatgacatgc acatctactt gcgaggcgtc catattggca
    4201  gagttgccgg ctcactaatg agtggacacc gtgccactac ctactggaat
    4251  agcgtcctca atgctgcata cgtgcgttac gctatcggac gagtggcgta
    4301  cgacacatac aaaccgttcc acgtaggtga cgacgtgcta attctgctgg
    4351  atagccctgc agacgcgtgg aatgtagtga agaagctgga gcacattggc
    4401  tgcactctac aacgctcgaa gcagtctgtg ggcataggtg gctacgagtt
    4451  cctgcgtgtc gctggctcgc cattcactgg tgtgggcggt tacgtggcga
    4501  ggtcggtggc aggcctggta agtggtagtt gggtgtcaag cgtcaagatg
    4551  gcacctcgtg aagcactcca atcactgata caacaggcgc ggagcataat
    4601  gaatcgcagt ggtaaccctg ccgcctacaa gctgctcatc agcagtgcca
    4651  ggcgcacgat cgggattgac cagcaatatt tggaggaatt cttgtcgggt
    4701  aacgtagcct tggcgcctgg accgtgttac cgcagtgatc ggcgatacgt
    4751  ggcacgtcat gtcgaatggg agagttcggc tgatgacccg tacggtgggg
    4801  ggagattgtt gatcggcggt attgaaattg agaagcttcc aaaccatgct
    4851  gcgagagact acgtgaactg ggcggcgagc gaggtcgaac gtgtcgggct
    4901  agccatggtc gggcgtgtgc cctggagagc gatggcgttg actgcttatg
    4951  cggctatgga accgtcgctg tatgggaacc cgtctggcgg tgtgcgtgct
    5001  gcgtacatat cacctcgtac cgtgcggtta atcgatcatt atattgacgc
    5051  agcggatata acaacaacgg attcacaaca cggtatacta gcacagtacc
    5101  ccctgctatc tttattgcga aactatttca gcatggagga cctgacctac
    5151  ctgcttaatt tcgtcggaag agatgccggg atagatgcgc gagtgacggc
    5201  gtggggaggt actaacgagg gtatttgtgt ctgtggtcta ctaccttatg
    5251  cagatgctgc aggtgcggcg tcacgtgtac tgggcaacgc gatacacgtg
    5301  tctgtgccgg tagcggtgtg aaacgaccgt gaggtcgggg accttcacac
    5351  cgataggc