Sequence of DPV Porcine type-C oncovirus

Porcine endogenous retrovirus class E clone P14.1, complete genome.

ACC No: AF356697

Dated: 2001-08-14 | Length: 8072 | CRC: 175001127

                !!NA_SEQUENCE 1.0
ID   AF356697   standard; genomic DNA; VRL; 8072 BP.
XX
AC   AF356697;
XX
SV   AF356697.1
XX
DT   14-AUG-2001 (Rel. 68, Created)
DT   14-AUG-2001 (Rel. 68, Last updated, Version 1)
XX
DE   Porcine endogenous retrovirus class E clone P14.1, complete genome.
XX
KW   .
XX
OS   Porcine endogenous retrovirus E
OC   Viruses; Retroid viruses; Retroviridae; Mammalian type C retroviruses;
OC   1-Mammalian type C virus group; Porcine endogenous retrovirus.
XX
RN   [1]
RP   1-8072
RX   MEDLINE; 21351036.
RX   PUBMED; 11457988.
RA   Mang R., Maas J., Chen X., Goudsmit J., van Der Kuyl A.C.;
RT   "Identification of a novel type C porcine endogenous retrovirus: evidence
RT   that copy number of endogenous retroviruses increases during host
RT   inbreeding";
RL   J. Gen. Virol. 82(Pt 8):1829-1834(2001).
XX
RN   [2]
RP   1-8072
RA   Mang R., Maas J., Chen X., Goudsmit J., van der Kuyl A.C.;
RT   ;
RL   Submitted (06-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Human Retrovirology, Amsterdam Institute of Viral Genomics, Meibergdreef
RL   45, Amsterdam 1105 BA, The Netherlands
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .8072
FT                   /db_xref="taxon:168238"
FT                   /mol_type="genomic DNA"
FT                   /organism="Porcine endogenous retrovirus E"
FT                   /clone="P14.1"
FT   LTR             1. .434
FT                   /note="5'LTR"
FT   misc_feature    1059. .2618
FT                   /note="similar to exogenous retrovirus gag gene"
FT   misc_feature    2619. .6239
FT                   /note="similar to exogenous retrovirus pol gene"
FT   misc_feature    6093. .7624
FT                   /note="similar to exogenous retrovirus env gene"
FT   LTR             7642. .8072
FT                   /note="3'LTR"
XX
SQ   Sequence 8072 BP; 2277 A; 1976 C; 1901 G; 1918 T; 0 other;

AF356697  Length: 8072  January 7, 2005 14:54  Type: N  Check: 4095  ..

       1  tgaaatggag ttttaactaa agaacaaccc ccccccccct tggctaagaa
      51  ggcagctgca agcctttcca actgtgctaa tcactatgcc acccttcttg
     101  taataacata acaactgtgt gctctctgtc caagccagca gccctgctaa
     151  ttaggtaccc agcattgctt atcagttctg cttctgtaac cttgcttgct
     201  caatttctta gggaggaaca ctgtctgctt ggggatgggg gaggtccagg
     251  atgcttacat gggaaaatca agaccttgta gtgtataaaa gttactgaga
     301  acaaagacct ggtgctcaga ctctggaggt gactcctctg agcccacacc
     351  agtgctgaat aaaccttgct tttccatatc tctgagtgct gtttgtctcc
     401  ttctgttgcc acagtttttg tggtttctgc aacattttgg tgcattggct
     451  gggaagccga caaccgagct ggcctcttgt gccaccgttg tctgggaact
     501  gggggaggcc acggtcaccg gcctggtgac aggtggatag cacacaccgg
     551  ccattttgcc ggatccagac cctcacttgg gccatggcct tggccacacc
     601  gcttcccgaa tggactcaga aggagagtgg aaacaggttc ctggacagga
     651  cgtcagactg gtgagtgccc cggggacatc tgcccaagtc aggacccacc
     701  atatggtgaa ggagagactg atcacctctc agtgaccaaa gggtcactca
     751  ggtcagggtt tgctccgttg gcatcgggag gcttgtcaat tctggtgtgt
     801  gtgtgtgagt gactggagag aacaagagcc catgctccac catctttgga
     851  ctacggagtc agagtgagtc ctaacctgca gttccatggc gaccctcatg
     901  cggcttatgg tggccctctt cagggggatc ctgatgttgg ggtttataca
     951  gtcccaccta tgctaagagg cgcctgaaat atctcctcca ggggagaggt
    1001  cagacggacg aagagattgt tcgtcttgcg tcaccggcac agggtgggac
    1051  ttcacacaat gggtaaatcg gcttccaagc ccactgtctt agagcatatg
    1101  gttaagaatt ttaagaaagg attttctaga gattatggtg ttaaactgag
    1151  tcctggaaaa ctgtgtaccc tctgtaccct agagtgaccc tcatttggtg
    1201  atggttggcc tccagaaggg accttagatg tgttcacagt tgcagcagta
    1251  tataatgtta taacaggaga ccctggacac ccagacccat ttccatatat
    1301  tgatcaatgg ttggaaatta cctatttgag gcccccatag gttcggttct
    1351  gcactacaga ccagggacag tgtaaggtgc tagtagccca gtccaagaag
    1401  aaaatcttgt cccaaaaaag gtgccaccta tttatcaagg ggaacctgag
    1451  gactcgcccc ctatgccacc atcttatgtg ctgccggccc cacctccagg
    1501  agccaaaggt ccccagatgc cagatagccc accaccttct gtttctcctc
    1551  caccttctgc ttctgaagtt cccgaggcaa tatcacccct gcagccagtt
    1601  tctccagaac ctatgagcag gcgtctccat tcagctcagg cagcagccac
    1651  tccagcatta caaatgccct tacgggagac acggggacca cagcaagtca
    1701  cccccaatgg gaccatacaa gaggggggat gttttttatt attaccagcc
    1751  cttttccacc gctgatctcc tcaactggaa acaccgcact ccctcatatt
    1801  ctgaaaagct tcaggcactg attgatctct tagaattcat tttccagaca
    1851  cactgtccca ccttgataga ctgacagcaa cttcttttta ctctatttga
    1901  cactgaagag tgctggcgaa ttgtaacaga agcccaaaaa tggtttcagg
    1951  ccaatgcagg gggtcaagca gacttggcaa actgggtgag ggaaaccttc
    2001  ccagaagaaa acccccactg ggactatgac actgaagaag ggaaacgtaa
    2051  ccttgagagg tactggtagg ccttcctaca gggggcaaaa gctggggcta
    2101  aaaagcccac taatatagct aagatcagtg agatactaca agagccgaat
    2151  gaaagcccag ccaaattcta tgagagacta tgtgaggctt tccgaaccta
    2201  cactcctttt gatcccgagg cccctgagaa ccaaagggtg ataaatcaga
    2251  tatccataaa aagctacaga aattagaagg ctttgcagga gagaatgcca
    2301  ctaaactgtt ggaaatagcc aacaaagttt ttattaaccg agaccaggtg
    2351  gcccactgtg atgcagaaaa gagaatgaaa caaaaagtga ctcttctggc
    2401  agcctccctg tcaaaacttg tgcccccagt gggaccaccc cataggggac
    2451  aaggcacaag gccagggaaa aggagtcccc tggaacatga ccaatgtgct
    2501  tactgcaaag aaaagggaca ttggaaaaat gaatgcccca accgtcctga
    2551  gaaaaagacc aaagccccac ctagccggta ccgatctgag ccactcagca
    2601  ccaacctgat cggcctagcg gagtctgact ggggggacca ggctctctcc
    2651  aactgggccg ctgagagcct atggtcagaa ttcaagtagg gggccacccc
    2701  atagacttta tggttgacac aggtgccgaa ctttctgtgg ttacacaacc
    2751  tgtggctccc ctctcgggga aagaaaccac cattgttggg gccacaggta
    2801  accaaaccca caggcccttc tgcggtcctc gacgatgtcg gttaggaggc
    2851  catgaagtaa tacatgaatt tctttaccta actgactgcc cagttcccct
    2901  gatgggaaaa gacctgctgg ctaaaatggg gacacaaatt tccttttcta
    2951  ctgatggatc agcccaactc aaattgacag aaccgccctc tcctttaatc
    3001  atggctcttg ctgtaaaaag agaagaggaa tggtgcttgt actcttcccc
    3051  ttcagaaatg gggaccattc ccccagaact agagactaaa tacccattgg
    3101  tttgggctga aggaaaccca ccaggactgg caaaatgcca cgctcctgtc
    3151  ttaattgatc taaaacccag agctcaactg gtaaagctat ggcaatactc
    3201  aatgcccaga gaagcttgac tgggaatcca ggttcacctg gataggctgc
    3251  ttcagcacgg actgttaata aaatgtcagt acccttggaa caccccttta
    3301  ctgccaatga aaaaaccggg aacacaggac taccgcccag tacaggactt
    3351  gagagccata aatgaagcaa cagtcacatt acacccatcc gtccctaacc
    3401  catatacact gctagggctg atcccctcca ctgctgagtg gtttacttgt
    3451  ctggacttaa aagatgcttt tttctgcctc cggatgccac ctgccagtca
    3501  gcccttgttt gcttttgaat ggcagaatac acatacaggg acaaaggaac
    3551  agctcacctg gactagactc ccacaaggat tcaaaaactc tcccactctt
    3601  tttagcagcg ccttagctgc tgacctggct gaatttcctg gacaaaaact
    3651  gggctgtgtt ttgctacatt atgttgacga cctcttacta gctggcacca
    3701  tggaggctca gtgcctagag ggaacaagag ctctcttttc cctactgatg
    3751  gaagcagggt attgggtatc aaagaaaaag gcacaaatat gtaaaaaaca
    3801  agtcaagtat ctgggcttca acatcatgca gggccaatga atgctgggga
    3851  ctgaaagaaa gcaggcagtt tgtgccattc ctgtccctac catctgccgg
    3901  aatgttcgtg agttcctagg ggcagcagaa ttctgctgga tatggatccc
    3951  caggttttca gacctggcta ggcctctgta tgaggctcta aaaggagaag
    4001  aaaaggctcc ccttaaatgg ggaccaagcc aggagacagc gtttcagaca
    4051  atcaaaacta aactcactga ggctccagcc ttgggacttc ctgatgtaac
    4101  cagagaattt aacctttttg ttcatgagaa aaatggggtg gctttgggag
    4151  tcttaacaag aatttgggcc ttggcagagg ccagtggcat atctgtctaa
    4201  acaaattgac tcagttgctg ccggatggcc tccctgcctc tgagagctgg
    4251  cagctaccac cttgttggtg agagaggttg acaagttgac cctgggacaa
    4301  aacctcaatg ttaaagtccc acactcagtt gtaaccctaa tggataccag
    4351  gggccaccat tggctcacac atgcacgaat gactcaatat caagggttac
    4401  tatgtgaaaa tccatgggta aaattggagg ttgtatgaac tctgaaccca
    4451  gctacttttc tgccagatga agcggggccc ccagaccata actgcctgga
    4501  ggtactagat gaggtgtttt ccagcaggcc tgacttgact gataaaccac
    4551  tccaaaatcc tgacctggtt ttatatattg atggcagcag ctttatggag
    4601  gatggaaaaa ggatggcagg atatgctgtg gtatctgact taaaagtgat
    4651  agaagcagag gtgcttcctc aaggctggtc agcacagaga gcagaattat
    4701  gggccttaat cagagcactg gagctcagcc aagaccagca agttaatatc
    4751  tataccgact catgatatgc ctttgcaact ttacatgtcc atggagcctt
    4801  atataaagaa agagggctcc tcactgctga aggaaaagga attaaaaacc
    4851  aggctgaaat cttaaagctc ctagaggcag tatgggaacc taaagaagtt
    4901  gcagttatcc actgtaaagg ccaccaaaag ggggatgacc cagtaacaaa
    4951  aggaaaccat agtgctgatg cagcttccag acaggcagcc cggggacaac
    5001  agccagacaa acctaaggtc ttgctggccc cagaaatgcc agctgtcccc
    5051  aaatattctc cagaggaaga aaaatggata agggaggaag gaggaactaa
    5101  aactaaaacg ggatggtggg tcacacggga ccaccgagtt tacattccag
    5151  aacagctggc ccacaaacta gtctgccaag aacatgagct aacccacatg
    5201  gacaaaactg ccttagagac cctactgggc tggtactatc tcattgctca
    5251  tcttcctgca ctctgctcct ctgtctccca aaggtgcata acctgtttac
    5301  agaataatgc ctgccagggg ccccacagac cagctggggc acagcactgc
    5351  agactgtccc catttgagga tatggaagtg gacttcactg aggtcacccc
    5401  tagtaaagag tacaaatatt tactaatttt tatctgtact ttttcaggat
    5451  gggtagaggc catccctacc tgaactgaaa aggcaaggaa agtaatcaag
    5501  gcactcctga gaaacattat tcccagatac ggaatgcctc tgaccatcag
    5551  gtcagataat ggactggcat tcatggctga aacagtacaa caggtggcaa
    5601  aagctttaca gatccgatgg aaactacatt ctgcttattg ccctcaaagt
    5651  tcagggaaag tagaatgcat gaaccgaacc cttaaacaga ccctggcaga
    5701  gttatgtcag gaaactggct tgccctggat agacatgttg ctggtggccc
    5751  tcttaaaagt gagatgctca ccccgagcgg gaataggatt cttgccattt
    5801  gaaatcttat atgaaaggca acctccacta atcagtttaa aaggaaacac
    5851  cagggagttg agagacttgg aattacataa acaattacaa ggactggggc
    5901  tcactatttc ttggatatat aaatgggtca cagacagaat acctgtgtcc
    5951  ttaggtataa cagtacaccc ccacaagctg ggggaccagg tgtggataaa
    6001  ggactggaaa aatgagccct tgaggccagt atggaagggc ccctatactg
    6051  taattctaac cacccccacc actcttaaag taacaggaat agatgcttgg
    6101  atccatcatt ccagagttaa accagctggc ccagctgaca accgtggaga
    6151  gtgggagact gccctcgatc cagagacctc tttgcctgac aatacagaga
    6201  aggagacgat gatctcaaag ccctgctctg accacataag cattcgcatt
    6251  gatggaagag gccttgaccc tggaactgtg ctacatttcc agagaatcac
    6301  atttgcactc caagctgcct ctcacagggt ctttcattcc ttttataaag
    6351  agataagaaa caccccacct cccgttccgg ccacaactaa gaatttgttc
    6401  ttagccctgg cagaaaatat tacacaaact ttcaaggtct cctcttgtta
    6451  tgtatgtggg ggaacaaaca caggagacca ctggccttgg caagccagag
    6501  agctggaccc attagagcct cataatgaga ctacataccc ccaactcacc
    6551  aatggggtat ggctcctcag aactgctatt atagggagaa attgtcttgc
    6601  gaggtgggga ggacagttta atgtttgagt tggaagccta acatgtttag
    6651  gcctaaggta ttataatctg actgcccaaa agactcaatg gtggtcatcc
    6701  tccaatcgct caaagcccaa gcctaatccc ttgtctaact tttccctcct
    6751  tcgacaagca tgggaagata tcagtactaa tatccattgg cgggcaccaa
    6801  agggattata ttggatttgt ggaaaaaaat ggcctattcc atactcccct
    6851  ccaaattgga ctggggtatg tgtactggga acaatcagat cttccttctt
    6901  cctgctcctg ctgtcactag gggagcaact gggagttcct atatacagca
    6951  cagggtgccc agagagaccg gagggctgtc caaattggag actggaaagt
    7001  tgatgaatgg cccccagaac agataattca atattatgga cctgccacct
    7051  gggcagagga tggctcttgg agatatcaca cccctatcta tatgctgaac
    7101  cgcatcatca gactacaggc agttttggaa cttataacaa atgacactga
    7151  aagggccttg actatattgg cccaacaaca aactaaaatg ctcagtgcaa
    7201  tctaccaaaa tcgcttggcc ttggattatt tacttgcttc tgaaggaggg
    7251  ctttgtggaa aatttaactt aagtaattgc tgtctacaaa tagatgacac
    7301  cagaaaggtg gtagaagaaa ttgctgaccg catgactaaa ctagcccatg
    7351  tacctgtaca aacttggaaa ggatgggatg cagacagtct ctttggtaaa
    7401  tggttctctt ggttgggaga aattaagaca atggttggaa tagtcatggt
    7451  tatactcgca gggtgcctac ttgttccctg ccttgtacct ctcctgataa
    7501  atattataaa aggttttata aaaaccatgg ttgaaagaaa aacagcctcc
    7551  cacctgctac ttattagagg ctaccaaagg gttatgactg atgatgatct
    7601  gtaaagggtg cagatgcacc ctgaacatca agagggggga atgaaatgaa
    7651  gttttaacta aagaacaacc cccccccttg gctaagaagg cagctgcaag
    7701  cctttccaac tgtgctaatc actatgccac ccttcttgta ataacataac
    7751  aactgtgtgc tctctgtcca agccagcagc cctgctaatt aggtacccag
    7801  cattgcttat cagttctgct tctgtaacct tgcttgctca atttcttagg
    7851  gaggaacact gtctgcttgg ggatggggga ggtccaggat gcttacatgg
    7901  gaaaatcaag accttgtagt gtataaaagt tactgagaac aaagacctgg
    7951  tgctcagact ctggaggtga ctcctctgag cccacaccag tgctgaataa
    8001  accttgcttt tccatatctc tgagtgctgt ttgtctcctt ctgttgccac
    8051  agtttttgtg gtttctgcaa ca