Sequence of DPV Porcine type-C oncovirus
Porcine endogenous retrovirus class E clone P14.1, complete genome.
ACC No: AF356697
Dated: 2001-08-14 | Length: 8072 | CRC: 175001127
!!NA_SEQUENCE 1.0
ID AF356697 standard; genomic DNA; VRL; 8072 BP.
XX
AC AF356697;
XX
SV AF356697.1
XX
DT 14-AUG-2001 (Rel. 68, Created)
DT 14-AUG-2001 (Rel. 68, Last updated, Version 1)
XX
DE Porcine endogenous retrovirus class E clone P14.1, complete genome.
XX
KW .
XX
OS Porcine endogenous retrovirus E
OC Viruses; Retroid viruses; Retroviridae; Mammalian type C retroviruses;
OC 1-Mammalian type C virus group; Porcine endogenous retrovirus.
XX
RN [1]
RP 1-8072
RX MEDLINE; 21351036.
RX PUBMED; 11457988.
RA Mang R., Maas J., Chen X., Goudsmit J., van Der Kuyl A.C.;
RT "Identification of a novel type C porcine endogenous retrovirus: evidence
RT that copy number of endogenous retroviruses increases during host
RT inbreeding";
RL J. Gen. Virol. 82(Pt 8):1829-1834(2001).
XX
RN [2]
RP 1-8072
RA Mang R., Maas J., Chen X., Goudsmit J., van der Kuyl A.C.;
RT ;
RL Submitted (06-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL Human Retrovirology, Amsterdam Institute of Viral Genomics, Meibergdreef
RL 45, Amsterdam 1105 BA, The Netherlands
XX
FH Key Location/Qualifiers
FH
FT source 1. .8072
FT /db_xref="taxon:168238"
FT /mol_type="genomic DNA"
FT /organism="Porcine endogenous retrovirus E"
FT /clone="P14.1"
FT LTR 1. .434
FT /note="5'LTR"
FT misc_feature 1059. .2618
FT /note="similar to exogenous retrovirus gag gene"
FT misc_feature 2619. .6239
FT /note="similar to exogenous retrovirus pol gene"
FT misc_feature 6093. .7624
FT /note="similar to exogenous retrovirus env gene"
FT LTR 7642. .8072
FT /note="3'LTR"
XX
SQ Sequence 8072 BP; 2277 A; 1976 C; 1901 G; 1918 T; 0 other;
AF356697 Length: 8072 January 7, 2005 14:54 Type: N Check: 4095 ..
1 tgaaatggag ttttaactaa agaacaaccc ccccccccct tggctaagaa
51 ggcagctgca agcctttcca actgtgctaa tcactatgcc acccttcttg
101 taataacata acaactgtgt gctctctgtc caagccagca gccctgctaa
151 ttaggtaccc agcattgctt atcagttctg cttctgtaac cttgcttgct
201 caatttctta gggaggaaca ctgtctgctt ggggatgggg gaggtccagg
251 atgcttacat gggaaaatca agaccttgta gtgtataaaa gttactgaga
301 acaaagacct ggtgctcaga ctctggaggt gactcctctg agcccacacc
351 agtgctgaat aaaccttgct tttccatatc tctgagtgct gtttgtctcc
401 ttctgttgcc acagtttttg tggtttctgc aacattttgg tgcattggct
451 gggaagccga caaccgagct ggcctcttgt gccaccgttg tctgggaact
501 gggggaggcc acggtcaccg gcctggtgac aggtggatag cacacaccgg
551 ccattttgcc ggatccagac cctcacttgg gccatggcct tggccacacc
601 gcttcccgaa tggactcaga aggagagtgg aaacaggttc ctggacagga
651 cgtcagactg gtgagtgccc cggggacatc tgcccaagtc aggacccacc
701 atatggtgaa ggagagactg atcacctctc agtgaccaaa gggtcactca
751 ggtcagggtt tgctccgttg gcatcgggag gcttgtcaat tctggtgtgt
801 gtgtgtgagt gactggagag aacaagagcc catgctccac catctttgga
851 ctacggagtc agagtgagtc ctaacctgca gttccatggc gaccctcatg
901 cggcttatgg tggccctctt cagggggatc ctgatgttgg ggtttataca
951 gtcccaccta tgctaagagg cgcctgaaat atctcctcca ggggagaggt
1001 cagacggacg aagagattgt tcgtcttgcg tcaccggcac agggtgggac
1051 ttcacacaat gggtaaatcg gcttccaagc ccactgtctt agagcatatg
1101 gttaagaatt ttaagaaagg attttctaga gattatggtg ttaaactgag
1151 tcctggaaaa ctgtgtaccc tctgtaccct agagtgaccc tcatttggtg
1201 atggttggcc tccagaaggg accttagatg tgttcacagt tgcagcagta
1251 tataatgtta taacaggaga ccctggacac ccagacccat ttccatatat
1301 tgatcaatgg ttggaaatta cctatttgag gcccccatag gttcggttct
1351 gcactacaga ccagggacag tgtaaggtgc tagtagccca gtccaagaag
1401 aaaatcttgt cccaaaaaag gtgccaccta tttatcaagg ggaacctgag
1451 gactcgcccc ctatgccacc atcttatgtg ctgccggccc cacctccagg
1501 agccaaaggt ccccagatgc cagatagccc accaccttct gtttctcctc
1551 caccttctgc ttctgaagtt cccgaggcaa tatcacccct gcagccagtt
1601 tctccagaac ctatgagcag gcgtctccat tcagctcagg cagcagccac
1651 tccagcatta caaatgccct tacgggagac acggggacca cagcaagtca
1701 cccccaatgg gaccatacaa gaggggggat gttttttatt attaccagcc
1751 cttttccacc gctgatctcc tcaactggaa acaccgcact ccctcatatt
1801 ctgaaaagct tcaggcactg attgatctct tagaattcat tttccagaca
1851 cactgtccca ccttgataga ctgacagcaa cttcttttta ctctatttga
1901 cactgaagag tgctggcgaa ttgtaacaga agcccaaaaa tggtttcagg
1951 ccaatgcagg gggtcaagca gacttggcaa actgggtgag ggaaaccttc
2001 ccagaagaaa acccccactg ggactatgac actgaagaag ggaaacgtaa
2051 ccttgagagg tactggtagg ccttcctaca gggggcaaaa gctggggcta
2101 aaaagcccac taatatagct aagatcagtg agatactaca agagccgaat
2151 gaaagcccag ccaaattcta tgagagacta tgtgaggctt tccgaaccta
2201 cactcctttt gatcccgagg cccctgagaa ccaaagggtg ataaatcaga
2251 tatccataaa aagctacaga aattagaagg ctttgcagga gagaatgcca
2301 ctaaactgtt ggaaatagcc aacaaagttt ttattaaccg agaccaggtg
2351 gcccactgtg atgcagaaaa gagaatgaaa caaaaagtga ctcttctggc
2401 agcctccctg tcaaaacttg tgcccccagt gggaccaccc cataggggac
2451 aaggcacaag gccagggaaa aggagtcccc tggaacatga ccaatgtgct
2501 tactgcaaag aaaagggaca ttggaaaaat gaatgcccca accgtcctga
2551 gaaaaagacc aaagccccac ctagccggta ccgatctgag ccactcagca
2601 ccaacctgat cggcctagcg gagtctgact ggggggacca ggctctctcc
2651 aactgggccg ctgagagcct atggtcagaa ttcaagtagg gggccacccc
2701 atagacttta tggttgacac aggtgccgaa ctttctgtgg ttacacaacc
2751 tgtggctccc ctctcgggga aagaaaccac cattgttggg gccacaggta
2801 accaaaccca caggcccttc tgcggtcctc gacgatgtcg gttaggaggc
2851 catgaagtaa tacatgaatt tctttaccta actgactgcc cagttcccct
2901 gatgggaaaa gacctgctgg ctaaaatggg gacacaaatt tccttttcta
2951 ctgatggatc agcccaactc aaattgacag aaccgccctc tcctttaatc
3001 atggctcttg ctgtaaaaag agaagaggaa tggtgcttgt actcttcccc
3051 ttcagaaatg gggaccattc ccccagaact agagactaaa tacccattgg
3101 tttgggctga aggaaaccca ccaggactgg caaaatgcca cgctcctgtc
3151 ttaattgatc taaaacccag agctcaactg gtaaagctat ggcaatactc
3201 aatgcccaga gaagcttgac tgggaatcca ggttcacctg gataggctgc
3251 ttcagcacgg actgttaata aaatgtcagt acccttggaa caccccttta
3301 ctgccaatga aaaaaccggg aacacaggac taccgcccag tacaggactt
3351 gagagccata aatgaagcaa cagtcacatt acacccatcc gtccctaacc
3401 catatacact gctagggctg atcccctcca ctgctgagtg gtttacttgt
3451 ctggacttaa aagatgcttt tttctgcctc cggatgccac ctgccagtca
3501 gcccttgttt gcttttgaat ggcagaatac acatacaggg acaaaggaac
3551 agctcacctg gactagactc ccacaaggat tcaaaaactc tcccactctt
3601 tttagcagcg ccttagctgc tgacctggct gaatttcctg gacaaaaact
3651 gggctgtgtt ttgctacatt atgttgacga cctcttacta gctggcacca
3701 tggaggctca gtgcctagag ggaacaagag ctctcttttc cctactgatg
3751 gaagcagggt attgggtatc aaagaaaaag gcacaaatat gtaaaaaaca
3801 agtcaagtat ctgggcttca acatcatgca gggccaatga atgctgggga
3851 ctgaaagaaa gcaggcagtt tgtgccattc ctgtccctac catctgccgg
3901 aatgttcgtg agttcctagg ggcagcagaa ttctgctgga tatggatccc
3951 caggttttca gacctggcta ggcctctgta tgaggctcta aaaggagaag
4001 aaaaggctcc ccttaaatgg ggaccaagcc aggagacagc gtttcagaca
4051 atcaaaacta aactcactga ggctccagcc ttgggacttc ctgatgtaac
4101 cagagaattt aacctttttg ttcatgagaa aaatggggtg gctttgggag
4151 tcttaacaag aatttgggcc ttggcagagg ccagtggcat atctgtctaa
4201 acaaattgac tcagttgctg ccggatggcc tccctgcctc tgagagctgg
4251 cagctaccac cttgttggtg agagaggttg acaagttgac cctgggacaa
4301 aacctcaatg ttaaagtccc acactcagtt gtaaccctaa tggataccag
4351 gggccaccat tggctcacac atgcacgaat gactcaatat caagggttac
4401 tatgtgaaaa tccatgggta aaattggagg ttgtatgaac tctgaaccca
4451 gctacttttc tgccagatga agcggggccc ccagaccata actgcctgga
4501 ggtactagat gaggtgtttt ccagcaggcc tgacttgact gataaaccac
4551 tccaaaatcc tgacctggtt ttatatattg atggcagcag ctttatggag
4601 gatggaaaaa ggatggcagg atatgctgtg gtatctgact taaaagtgat
4651 agaagcagag gtgcttcctc aaggctggtc agcacagaga gcagaattat
4701 gggccttaat cagagcactg gagctcagcc aagaccagca agttaatatc
4751 tataccgact catgatatgc ctttgcaact ttacatgtcc atggagcctt
4801 atataaagaa agagggctcc tcactgctga aggaaaagga attaaaaacc
4851 aggctgaaat cttaaagctc ctagaggcag tatgggaacc taaagaagtt
4901 gcagttatcc actgtaaagg ccaccaaaag ggggatgacc cagtaacaaa
4951 aggaaaccat agtgctgatg cagcttccag acaggcagcc cggggacaac
5001 agccagacaa acctaaggtc ttgctggccc cagaaatgcc agctgtcccc
5051 aaatattctc cagaggaaga aaaatggata agggaggaag gaggaactaa
5101 aactaaaacg ggatggtggg tcacacggga ccaccgagtt tacattccag
5151 aacagctggc ccacaaacta gtctgccaag aacatgagct aacccacatg
5201 gacaaaactg ccttagagac cctactgggc tggtactatc tcattgctca
5251 tcttcctgca ctctgctcct ctgtctccca aaggtgcata acctgtttac
5301 agaataatgc ctgccagggg ccccacagac cagctggggc acagcactgc
5351 agactgtccc catttgagga tatggaagtg gacttcactg aggtcacccc
5401 tagtaaagag tacaaatatt tactaatttt tatctgtact ttttcaggat
5451 gggtagaggc catccctacc tgaactgaaa aggcaaggaa agtaatcaag
5501 gcactcctga gaaacattat tcccagatac ggaatgcctc tgaccatcag
5551 gtcagataat ggactggcat tcatggctga aacagtacaa caggtggcaa
5601 aagctttaca gatccgatgg aaactacatt ctgcttattg ccctcaaagt
5651 tcagggaaag tagaatgcat gaaccgaacc cttaaacaga ccctggcaga
5701 gttatgtcag gaaactggct tgccctggat agacatgttg ctggtggccc
5751 tcttaaaagt gagatgctca ccccgagcgg gaataggatt cttgccattt
5801 gaaatcttat atgaaaggca acctccacta atcagtttaa aaggaaacac
5851 cagggagttg agagacttgg aattacataa acaattacaa ggactggggc
5901 tcactatttc ttggatatat aaatgggtca cagacagaat acctgtgtcc
5951 ttaggtataa cagtacaccc ccacaagctg ggggaccagg tgtggataaa
6001 ggactggaaa aatgagccct tgaggccagt atggaagggc ccctatactg
6051 taattctaac cacccccacc actcttaaag taacaggaat agatgcttgg
6101 atccatcatt ccagagttaa accagctggc ccagctgaca accgtggaga
6151 gtgggagact gccctcgatc cagagacctc tttgcctgac aatacagaga
6201 aggagacgat gatctcaaag ccctgctctg accacataag cattcgcatt
6251 gatggaagag gccttgaccc tggaactgtg ctacatttcc agagaatcac
6301 atttgcactc caagctgcct ctcacagggt ctttcattcc ttttataaag
6351 agataagaaa caccccacct cccgttccgg ccacaactaa gaatttgttc
6401 ttagccctgg cagaaaatat tacacaaact ttcaaggtct cctcttgtta
6451 tgtatgtggg ggaacaaaca caggagacca ctggccttgg caagccagag
6501 agctggaccc attagagcct cataatgaga ctacataccc ccaactcacc
6551 aatggggtat ggctcctcag aactgctatt atagggagaa attgtcttgc
6601 gaggtgggga ggacagttta atgtttgagt tggaagccta acatgtttag
6651 gcctaaggta ttataatctg actgcccaaa agactcaatg gtggtcatcc
6701 tccaatcgct caaagcccaa gcctaatccc ttgtctaact tttccctcct
6751 tcgacaagca tgggaagata tcagtactaa tatccattgg cgggcaccaa
6801 agggattata ttggatttgt ggaaaaaaat ggcctattcc atactcccct
6851 ccaaattgga ctggggtatg tgtactggga acaatcagat cttccttctt
6901 cctgctcctg ctgtcactag gggagcaact gggagttcct atatacagca
6951 cagggtgccc agagagaccg gagggctgtc caaattggag actggaaagt
7001 tgatgaatgg cccccagaac agataattca atattatgga cctgccacct
7051 gggcagagga tggctcttgg agatatcaca cccctatcta tatgctgaac
7101 cgcatcatca gactacaggc agttttggaa cttataacaa atgacactga
7151 aagggccttg actatattgg cccaacaaca aactaaaatg ctcagtgcaa
7201 tctaccaaaa tcgcttggcc ttggattatt tacttgcttc tgaaggaggg
7251 ctttgtggaa aatttaactt aagtaattgc tgtctacaaa tagatgacac
7301 cagaaaggtg gtagaagaaa ttgctgaccg catgactaaa ctagcccatg
7351 tacctgtaca aacttggaaa ggatgggatg cagacagtct ctttggtaaa
7401 tggttctctt ggttgggaga aattaagaca atggttggaa tagtcatggt
7451 tatactcgca gggtgcctac ttgttccctg ccttgtacct ctcctgataa
7501 atattataaa aggttttata aaaaccatgg ttgaaagaaa aacagcctcc
7551 cacctgctac ttattagagg ctaccaaagg gttatgactg atgatgatct
7601 gtaaagggtg cagatgcacc ctgaacatca agagggggga atgaaatgaa
7651 gttttaacta aagaacaacc cccccccttg gctaagaagg cagctgcaag
7701 cctttccaac tgtgctaatc actatgccac ccttcttgta ataacataac
7751 aactgtgtgc tctctgtcca agccagcagc cctgctaatt aggtacccag
7801 cattgcttat cagttctgct tctgtaacct tgcttgctca atttcttagg
7851 gaggaacact gtctgcttgg ggatggggga ggtccaggat gcttacatgg
7901 gaaaatcaag accttgtagt gtataaaagt tactgagaac aaagacctgg
7951 tgctcagact ctggaggtga ctcctctgag cccacaccag tgctgaataa
8001 accttgcttt tccatatctc tgagtgctgt ttgtctcctt ctgttgccac
8051 agtttttgtg gtttctgcaa ca