Sequence of DPV African cassava mosaic virus
African cassava mosaic virus-[Cameroon-DO2] strain ACMV-CM/D02 component A, complete sequence.
ACC No: AF366902
Dated: 2005-04-15 | Length: 2781 | CRC: 1268998942
!!NA_SEQUENCE 1.0
ID AF366902 standard; genomic DNA; VRL; 2781 BP.
XX
AC AF366902;
XX
SV AF366902.1
XX
DT 03-APR-2002 (Rel. 71, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE African cassava mosaic virus-[Cameroon-DO2] strain ACMV-CM/D02 component A,
DE complete sequence.
XX
KW .
XX
OS African cassava mosaic virus-[Cameroon-DO2]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2781
RA Fondong V.N., Pita J.S., Rey C.M., Fauquet C.M.;
RT "Characterization of cassava mosaic viruses from Cameroon";
RL Unpublished.
XX
RN [2]
RP 1-2781
RA Fondong V.N., Pita J.S., Rey C.M., Fauquet C.M.;
RT ;
RL Submitted (29-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Cornell University, 334 Plant Science Building, Ithaca, NY
RL 14853, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /chromosome="component A"
FT /country="Cameroon: southwestern rainforest region"
FT /db_xref="taxon:222061"
FT /mol_type="genomic DNA"
FT /organism="African cassava mosaic virus-[Cameroon-DO2]"
FT /strain="ACMV-CM/D02"
FT CDS 143. .484
FT /codon_start=1
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProt/TrEMBL:Q8QUW4"
FT /note="previously AR2"
FT /gene="AV2"
FT /product="precoat protein"
FT /protein_id="AAM00358.1"
FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSPLGHDLVRDL
FT VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQAHV
FT QKAHDVQDV"
FT CDS 303. .1079
FT /codon_start=1
FT /db_xref="GOA:Q8QUW3"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:Q8QUW3"
FT /note="previously AR1"
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AAM00359.1"
FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW
FT MNRPMYRKPMMYRMYRSPDLPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH
FT RVGKRFCIKSAYILGKIWMDENIKKQNHTNNVMFYLLTDRRPYGNTPQDFGQIFNMFDN
FT EPSTATIKNDLRERFQVLRKFHATVIGGPFGIKEQALVKRFYRLNHHVTYNHQEAGKYE
FT NHPENALLLYMACTHASNPVYATLKIRIYFYDSIGN"
FT CDS complement(1076. .1480)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:Q8QUW2"
FT /note="REn; previously AL3"
FT /gene="AC3"
FT /product="replicational enhancer protein"
FT /protein_id="AAM00360.1"
FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI
FT ITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISINH
FT VIRAADHVLFNVIEKTIACQLTHEIKFNIY"
FT CDS complement(1221. .1628)
FT /codon_start=1
FT /db_xref="GOA:Q8QUW1"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:Q8QUW1"
FT /note="TRAP; previously AL2"
FT /gene="AC2"
FT /product="transcriptional activator"
FT /protein_id="AAM00361.1"
FT /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI
FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ
FT PAEGAGDSQMFSQLQDLDDLTASDWSFLKGL"
FT CDS complement(1537. .2613)
FT /codon_start=1
FT /db_xref="GOA:Q8QUW0"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:Q8QUW0"
FT /note="Rep; previously AL1"
FT /gene="AC1"
FT /product="replicase"
FT /protein_id="AAM00362.1"
FT /translation="MRTPRFRVQAKNVFLTYPKGSIPKEHLLSFIQTLSLPSNPKFIKI
FT CRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTSFHPNIQGAKSSSDVKSYLD
FT KDGDTVEWGXFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN
FT LNSNLERIFQEPPAPYISPFPCSSFDQVPVELEEWVADNVRASAARPWRPNSIVIEGDS
FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGSQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY
FT SGSNQSQSQTIQEASHPA"
FT CDS complement(2157. .2579)
FT /codon_start=1
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProt/TrEMBL:Q8QUV9"
FT /note="previously AL4"
FT /gene="AC4"
FT /product="transcriptional regulator AC4"
FT /protein_id="AAM00363.1"
FT /translation="MSFSHTQRVLSPKNTCCHSFKHSLSHLTLSSLKSVESCIRMGNLT
FT CMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSHTWIRTATPSNGDBF
FT RSMDDLLEAVNSPQMMLTPKRLTAAVSQKLLMSLGN"
XX
SQ Sequence 2781 BP; 741 A; 564 C; 687 G; 788 T; 1 other;
AF366902 Length: 2781 April 19, 2005 08:55 Type: N Check: 2068 ..
1 taatattacc ggttggcccc gccccccttt aaacgtggtc cccgcgcact
51 acgtatgtcg gccaatcatg ctgtagcgtt aaaggttatt tattagtggt
101 gggccactat atacttgcag gcgaagtcgt tgctagtgcg caatgtggga
151 tccactggtg aatgagtttc ctgactcggt gcatgggctt aggtgtatgc
201 ttgcaattaa atatttgcag gccttagagg atacatacga gcccagtcct
251 ctgggccacg atctggtgag agatttagtc tcagttatca gggctcgtaa
301 ttatgtcgaa gcgaccagga gatatcatca tttccactcc aggctccaag
351 gttcgtcgaa ggctgaactt cgacagccca tacaggaacc gtgctactgc
401 ccccactgtc cacgtcacaa atcgaaaacg ggcctggatg aacaggccca
451 tgtacagaaa gcccatgatg tacaggatgt atagaagccc agacctaccc
501 aggggctgtg aaggcccatg taaggtccag tcgtttgagc agagggatga
551 tgttaagcac cttggtatct gtaaggtgat tagtgatgtg acacgtgggc
601 ctgggctgac acacagggtc ggaaagaggt tttgtatcaa gtccgcttac
651 attcttggta agatctggat ggatgaaaat attaagaagc agaatcacac
701 taataatgtg atgttttacc tgcttacgga tagaaggcct tatggcaata
751 cgccccaaga ctttgggcag atatttaaca tgtttgataa tgagcccagt
801 actgcaacaa ttaagaacga tttgagggaa aggtttcagg tgttgaggaa
851 atttcatgcc actgttattg gtggtccatt tggcattaag gaacaggctt
901 tggtgaaaag gttttacagg ttgaatcatc acgtgacata taatcatcag
951 gaggcaggga agtatgagaa tcacccagag aatgcgttgc ttttgtacat
1001 ggcatgtact catgcttcca atcctgtata tgctacgttg aaaatacgta
1051 tatacttcta tgacagtatt ggcaattaat aaatattgaa ttttatttca
1101 tgagtcaact gacacgcaat agttttttca attacattga acaaaacatg
1151 atcagcagct ctaattacat ggttaattga gataacacct atattatcca
1201 agtatttaag tacttggtat ctaaagaccc ttaagaaaag accagtctga
1251 ggctgtaagg tcgtccagat cctgaagttg agaaaacatt tgtgaatccc
1301 cagctccttc cgcaggttgt gattgaatcg aacctggact gttatgatgt
1351 cctggttcag caggaatggt cgttgttggt gcctggttat tgtgaaatac
1401 aggggattgt ttatttccca ggtatacacg ccattcattg cttgaggagc
1451 agtgatgagt tcccctgtgc gtaaatccat gattggagca gttgatatgg
1501 aggtaatatg aacagccaca gacaagatcc actctcctac gccggatggc
1551 tcgcttcttg aattgtctgt gactgacttt gattggaacc tgagtagagt
1601 ggttctgtga gggtgatgaa gattgcattc tttaatgccc aggcctttag
1651 cgcttcttgc ttttcctcgt ctaggaactc tttataggac gaggttggtc
1701 ctggattgca gaggaagata gtgggaatgc cacctttaat ttgaacgggt
1751 ttcccgtatt ttgtgttgga ctgccagtcc cgctgggacc ccataaattc
1801 cttaaagtgc tttaggtagt gtggatcgac gtcatcaatg acgttgtacc
1851 aggcagcatt attgaagacc tttggactaa ggtccaggtg tccacacagg
1901 taattgtgtg ggcctaaaga tctggcccat atcgtcttcc ctgttctgct
1951 atcaccttct atgacaatac tattgggtct ccatggccgc gcagcggaag
2001 cccgaacatt atcagcgacc cattcttcaa gttcaacagg aacttggtca
2051 aaggaagaac atgggaaggg agaaatataa ggagctggtg gctcctggaa
2101 aatcctttct aaattactat ttagattatg aaactgaagt acaaagtcct
2151 ttgggactaa ttccctaatg acattaagag cttctgactt actgccgctg
2201 ttaagcgctt tggcgtaagc atcatttgcg gactgttgac cgcctctagc
2251 agatcgtcca tcgatctgaa atygtcccca ttcgacggtg tcgccgtcct
2301 tatccaggta tgacttgaca tctgagcttg atttggcacc ttgaatgttg
2351 gggtggaaac tggtgctaca gcttgggtgt acacaatcga agagacgatt
2401 gttcgtaatc gtgattttgc cctcgaattg gatgagggca tgcaagtgag
2451 gttccccatt ctgatgcagc tctctacaga ttttaatgaa cttagggtta
2501 gatgggagag agagtgtttg aatgaatgac agcaggtgtt ctttggggat
2551 agaacccttt gggtatgtga gaaagacatt cttggcttga actctaaaac
2601 gaggagtcct cattttgacc aagtcaattg gagacactca actagagaca
2651 ctcttgagca tctcctcctg ttaattggag acattatata gttgtctcca
2701 aatggcattc tggtaataag tggaacttta atttgaatga aaaggctcaa
2751 aaggcgcaga acacccaagg ggccaaccgt a