Sequence of DPV Oat necrotic mottle virus

Oat necrotic mottle virus isolate Pp polyprotein gene, partial cds.

ACC No: AF454461

Dated: 2002-05-03 | Length: 1728 | CRC: -1136876729

                !!NA_SEQUENCE 1.0
ID   AF454461   standard; RNA; VRL; 1728 BP.
XX
AC   AF454461;
XX
SV   AF454461.1
XX
DT   28-DEC-2001 (Rel. 70, Created)
DT   03-MAY-2002 (Rel. 71, Last updated, Version 2)
XX
DE   Oat necrotic mottle virus isolate Pp polyprotein gene, partial cds.
XX
KW   .
XX
OS   Oat necrotic mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Rymovirus.
XX
RN   [1]
RP   1-1728
RX   MEDLINE; 21904451.
RX   PUBMED; 11907340.
RA   Rabenstein F., Seifers D.L., Schubert J., French R., Stenger D.C.;
RT   "Phylogenetic relationships, strain diversity and biogeography of
RT   tritimoviruses";
RL   J. Gen. Virol. 83(Pt 4):895-906(2002).
XX
RN   [2]
RP   1-1728
RA   Rabenstein F., Seifers D.L., Schubert J., French R., Stenger D.C.;
RT   ;
RL   Submitted (03-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, University of Nebraska, 344 Keim Hall, Lincoln, NE 68583, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1728
FT                   /db_xref="taxon:112437"
FT                   /organism="Oat necrotic mottle virus"
FT                   /isolate="Pp"
FT                   /specific_host="Poa pratensis"
FT   CDS             <1. .1584
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AAL51047.1"
FT                   /translation="GQPSTVVDNTLCLIMAMEYCRLRVLDEHKHDMTILYVCNGDDLLI
FT                   NANTKDRDFVQQYYSGYMKELELNYSFDEAYRSIEQVEYMSHTFKKRGAKFIPKLKRER
FT                   IVAILEWQRSKEPKAIQSAIIAAYVEAFGYDDLTEMIEELAAEVSITWPEFKLPARKEV
FT                   EDLYLTGNRTDLGEEIKECGEKYCVYESSAAASDDVLAAANTGTQTNQGGGTVAPAANA
FT                   GTAAKDGSSGSGTAQTQLSDGSTMSGLDKGKNAVGQGQGSKGNTGSFTNNPVRDGGKAQ
FT                   DVKDQTPGLVFPDPKVTTKAIYIPRVVRDKVKPEMINNMIKYQPRVELIDNRYATLEQL
FT                   TTWMTEAAAGLDVTEDVFVNVLLPGWVYHCIVNTTSPENKALGTWRVVNNAGQDGEKQL
FT                   EYKIEPMYKSARPSMRSIMRHFGEGARVMIEESVRIGRPIIPRGFDKAGVLSVNNIVAA
FT                   CDFIMRNADDTPNFVQVQNSVAVNRLRGIQNKLFAQARLSAGTNEDNSRHDADDVRENT
FT                   HSFAGVNALA"
XX
SQ   Sequence 1728 BP; 528 A; 366 C; 463 G; 371 T; 0 other;

   AF454461  Length: 1728  May 8, 2002 15:55  Type: N  Check: 845  ..

       1  ggtcagccga gtaccgttgt cgataatacg ctgtgcctaa tcatggcaat
      51  ggaatactgc agattacgag ttctagatga acacaaacac gatatgacaa
     101  ttctgtatgt ttgtaatggc gatgatctct tgatcaatgc aaataccaaa
     151  gatcgtgatt ttgttcagca gtattacagt ggctacatga aagaactcga
     201  actcaactat tcattcgacg aggcgtacag gtcgattgag caagtggagt
     251  acatgtcgca cacattcaag aaacgaggcg ctaaattcat tcccaagctc
     301  aagcgtgagc gcattgtagc aattcttgaa tggcagagga gcaaggaacc
     351  aaaggcaatc caaagtgcaa taatagcagc atatgtcgaa gcatttggat
     401  atgatgacct cactgaaatg attgaggaac ttgcagctga ggtctcaatc
     451  acatggccag agtttaagct accagcacgt aaagaggttg aggatctgta
     501  tctcactggt aaccgaaccg atttgggtga ggaaatcaag gagtgcggtg
     551  aaaaatactg cgtgtacgaa tctagtgcag cagcttccga cgacgtgtta
     601  gcagcagcaa acactggcac acagacgaac caaggtggag gaacagttgc
     651  accagctgct aatgcaggga ccgccgctaa ggatggatcc agcgggtcag
     701  gaacagcaca aacgcagcta agcgatggct ccacaatgtc gggtttggac
     751  aaaggcaaga atgcggtcgg acaaggccaa ggatcaaaag gcaacactgg
     801  ctctttcaca aataacccag ttcgagatgg aggaaaagca caagacgtga
     851  aagatcaaac accagggtta gtttttccag atccgaaagt cacaacgaaa
     901  gctatctaca taccaagggt cgtccgagat aaggtgaaac ctgaaatgat
     951  caataatatg atcaagtacc agccacgagt tgagctcatt gataatcgtt
    1001  acgccacgct cgagcaattg acaacgtgga tgacggaggc ggcggctggt
    1051  cttgacgtaa cggaggacgt ctttgtgaat gtgttactac caggatgggt
    1101  gtaccactgc atcgttaaca caactagccc ggagaacaaa gcactgggaa
    1151  cgtggcgagt tgtgaataac gctgggcagg atggtgaaaa acagctggag
    1201  tacaaaattg aacctatgta caaatcggca aggccatcaa tgcgctcaat
    1251  aatgcgacac tttggagaag gtgcccgagt gatgattgaa gagagcgtac
    1301  ggattggaag gccaattata ccaagagggt tcgacaaagc tggtgtgtta
    1351  agcgtcaata acattgtggc cgcgtgtgat tttatcatgc gtaatgcaga
    1401  cgacacacca aacttcgtgc aagtgcaaaa cagtgtggca gtcaacagac
    1451  tgagaggcat acaaaacaag ttatttgcac aagcgcgact gagtgcgggt
    1501  accaacgaag acaactccag gcatgatgca gatgatgtca gggagaacac
    1551  gcacagcttc gccggtgtga acgctcttgc gtaagcaccc taggagcaac
    1601  agactcacag gtaccgggtt tgagcggaat aacgctgcgt ttcgtcaact
    1651  cttagtggtt gttaggcgcg tacttctctt ctgaggtgtg cgtttctgat
    1701  agctatttgt gagttggggc gacgctcc