Sequence of DPV Oat necrotic mottle virus
Oat necrotic mottle virus isolate Pp polyprotein gene, partial cds.
ACC No: AF454461
Dated: 2002-05-03 | Length: 1728 | CRC: -1136876729
!!NA_SEQUENCE 1.0 ID AF454461 standard; RNA; VRL; 1728 BP. XX AC AF454461; XX SV AF454461.1 XX DT 28-DEC-2001 (Rel. 70, Created) DT 03-MAY-2002 (Rel. 71, Last updated, Version 2) XX DE Oat necrotic mottle virus isolate Pp polyprotein gene, partial cds. XX KW . XX OS Oat necrotic mottle virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; OC Rymovirus. XX RN [1] RP 1-1728 RX MEDLINE; 21904451. RX PUBMED; 11907340. RA Rabenstein F., Seifers D.L., Schubert J., French R., Stenger D.C.; RT "Phylogenetic relationships, strain diversity and biogeography of RT tritimoviruses"; RL J. Gen. Virol. 83(Pt 4):895-906(2002). XX RN [2] RP 1-1728 RA Rabenstein F., Seifers D.L., Schubert J., French R., Stenger D.C.; RT ; RL Submitted (03-DEC-2001) to the EMBL/GenBank/DDBJ databases. RL USDA-ARS, University of Nebraska, 344 Keim Hall, Lincoln, NE 68583, USA XX FH Key Location/Qualifiers FH FT source 1. .1728 FT /db_xref="taxon:112437" FT /organism="Oat necrotic mottle virus" FT /isolate="Pp" FT /specific_host="Poa pratensis" FT CDS <1. .1584 FT /codon_start=1 FT /product="polyprotein" FT /protein_id="AAL51047.1" FT /translation="GQPSTVVDNTLCLIMAMEYCRLRVLDEHKHDMTILYVCNGDDLLI FT NANTKDRDFVQQYYSGYMKELELNYSFDEAYRSIEQVEYMSHTFKKRGAKFIPKLKRER FT IVAILEWQRSKEPKAIQSAIIAAYVEAFGYDDLTEMIEELAAEVSITWPEFKLPARKEV FT EDLYLTGNRTDLGEEIKECGEKYCVYESSAAASDDVLAAANTGTQTNQGGGTVAPAANA FT GTAAKDGSSGSGTAQTQLSDGSTMSGLDKGKNAVGQGQGSKGNTGSFTNNPVRDGGKAQ FT DVKDQTPGLVFPDPKVTTKAIYIPRVVRDKVKPEMINNMIKYQPRVELIDNRYATLEQL FT TTWMTEAAAGLDVTEDVFVNVLLPGWVYHCIVNTTSPENKALGTWRVVNNAGQDGEKQL FT EYKIEPMYKSARPSMRSIMRHFGEGARVMIEESVRIGRPIIPRGFDKAGVLSVNNIVAA FT CDFIMRNADDTPNFVQVQNSVAVNRLRGIQNKLFAQARLSAGTNEDNSRHDADDVRENT FT HSFAGVNALA" XX SQ Sequence 1728 BP; 528 A; 366 C; 463 G; 371 T; 0 other; AF454461 Length: 1728 May 8, 2002 15:55 Type: N Check: 845 .. 1 ggtcagccga gtaccgttgt cgataatacg ctgtgcctaa tcatggcaat 51 ggaatactgc agattacgag ttctagatga acacaaacac gatatgacaa 101 ttctgtatgt ttgtaatggc gatgatctct tgatcaatgc aaataccaaa 151 gatcgtgatt ttgttcagca gtattacagt ggctacatga aagaactcga 201 actcaactat tcattcgacg aggcgtacag gtcgattgag caagtggagt 251 acatgtcgca cacattcaag aaacgaggcg ctaaattcat tcccaagctc 301 aagcgtgagc gcattgtagc aattcttgaa tggcagagga gcaaggaacc 351 aaaggcaatc caaagtgcaa taatagcagc atatgtcgaa gcatttggat 401 atgatgacct cactgaaatg attgaggaac ttgcagctga ggtctcaatc 451 acatggccag agtttaagct accagcacgt aaagaggttg aggatctgta 501 tctcactggt aaccgaaccg atttgggtga ggaaatcaag gagtgcggtg 551 aaaaatactg cgtgtacgaa tctagtgcag cagcttccga cgacgtgtta 601 gcagcagcaa acactggcac acagacgaac caaggtggag gaacagttgc 651 accagctgct aatgcaggga ccgccgctaa ggatggatcc agcgggtcag 701 gaacagcaca aacgcagcta agcgatggct ccacaatgtc gggtttggac 751 aaaggcaaga atgcggtcgg acaaggccaa ggatcaaaag gcaacactgg 801 ctctttcaca aataacccag ttcgagatgg aggaaaagca caagacgtga 851 aagatcaaac accagggtta gtttttccag atccgaaagt cacaacgaaa 901 gctatctaca taccaagggt cgtccgagat aaggtgaaac ctgaaatgat 951 caataatatg atcaagtacc agccacgagt tgagctcatt gataatcgtt 1001 acgccacgct cgagcaattg acaacgtgga tgacggaggc ggcggctggt 1051 cttgacgtaa cggaggacgt ctttgtgaat gtgttactac caggatgggt 1101 gtaccactgc atcgttaaca caactagccc ggagaacaaa gcactgggaa 1151 cgtggcgagt tgtgaataac gctgggcagg atggtgaaaa acagctggag 1201 tacaaaattg aacctatgta caaatcggca aggccatcaa tgcgctcaat 1251 aatgcgacac tttggagaag gtgcccgagt gatgattgaa gagagcgtac 1301 ggattggaag gccaattata ccaagagggt tcgacaaagc tggtgtgtta 1351 agcgtcaata acattgtggc cgcgtgtgat tttatcatgc gtaatgcaga 1401 cgacacacca aacttcgtgc aagtgcaaaa cagtgtggca gtcaacagac 1451 tgagaggcat acaaaacaag ttatttgcac aagcgcgact gagtgcgggt 1501 accaacgaag acaactccag gcatgatgca gatgatgtca gggagaacac 1551 gcacagcttc gccggtgtga acgctcttgc gtaagcaccc taggagcaac 1601 agactcacag gtaccgggtt tgagcggaat aacgctgcgt ttcgtcaact 1651 cttagtggtt gttaggcgcg tacttctctt ctgaggtgtg cgtttctgat 1701 agctatttgt gagttggggc gacgctcc