Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate Sp-13, complete genome.
ACC No: AF484251
Dated: 2005-03-24 | Length: 6450 | CRC: -1066989282
!!NA_SEQUENCE 1.0 ID AF484251 standard; genomic RNA; VRL; 6450 BP. XX AC AF484251; XX SV AF484251.1 XX DT 08-JUL-2002 (Rel. 72, Created) DT 24-MAR-2005 (Rel. 83, Last updated, Version 2) XX DE Pepino mosaic virus isolate Sp-13, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae; OC Potexvirus. XX RN [1] RP 1-6450 RX PUBMED; 12376761. RA Aguilar J.M., Hernandez-Gallardo M.D., Cenis J.L., Lacasa A., Aranda M.A.; RT "Complete sequence of the Pepino mosaic virus RNA genome"; RL Arch. Virol. 147(10):2009-2015(2002). XX RN [2] RP 1-6450 RA Aguilar J.M., Hernandez-Gallardo M.D., Cenis J.L., Lacasa A., Aranda M.A.; RT ; RL Submitted (15-FEB-2002) to the EMBL/GenBank/DDBJ databases. RL Hortofruticultura Subtropical, Consejo Superior de Investigaciones RL Cientificas (CSIC), Estacion Experimental La Mayora-CSIC, Algarrobo-Costa, RL Malaga 29750, Spain XX FH Key Location/Qualifiers FH FT source 1. .6450 FT /country="Spain" FT /db_xref="taxon:112229" FT /mol_type="genomic RNA" FT /organism="Pepino mosaic virus" FT /isolate="Sp-13" FT /specific_host="tomato" FT 5'UTR 1. .86 FT CDS 87. .4406 FT /codon_start=1 FT /db_xref="GOA:Q8JSN4" FT /db_xref="InterPro:IPR000606" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007095" FT /db_xref="UniProt/TrEMBL:Q8JSN4" FT /note="RdRp" FT /product="RNA dependent RNA polymerase" FT /protein_id="AAM76161.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLHFMEPADVTHLFD FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVITTHTAIGQAISNAATTYKERRQLTQLVKKGTISLADFEQREPEIT FT YTEFEPETRPQVDCVTNYNNAVKNLGLSALDEQPQCSSSSSHIPCNEISLAMTDDDNAA FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ FT TTHDYHAVFDTAQSSGDLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS FT EYPSSIPADLVNTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWRESFA FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA FT LQKCKVPILVPSQMKKSAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAF FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKLKLTSKTLFPKQVKG FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT CDS 4432. .5136 FT /codon_start=1 FT /db_xref="GOA:Q8JSN3" FT /db_xref="InterPro:IPR000606" FT /db_xref="UniProt/TrEMBL:Q8JSN3" FT /product="TGB1 protein" FT /protein_id="AAM76162.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGTIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK FT LTIGELNARSNS" FT CDS 5117. .5488 FT /codon_start=1 FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProt/TrEMBL:Q8JJH7" FT /product="TGB2 protein" FT /protein_id="AAM76163.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT CDS 5340. .5594 FT /codon_start=1 FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProt/TrEMBL:Q8JSN2" FT /product="TGB3 protein" FT /protein_id="AAM76164.1" FT /translation="MSSYLSSFSRWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QAIIDSAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN" FT CDS 5633. .6346 FT /codon_start=1 FT /db_xref="GOA:Q8JJF2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProt/TrEMBL:Q8JJF2" FT /note="CP" FT /product="coat protein" FT /protein_id="AAM76165.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6347. .6450 FT polyA_site 6410 XX SQ Sequence 6450 BP; 2098 A; 1463 C; 1175 G; 1714 T; 0 other; AF484251 Length: 6450 March 29, 2005 13:35 Type: N Check: 315 .. 1 gaaaacaaaa taaataaata aatatacaaa gttaaactaa cacaacataa 51 ccacgtggaa aaacagcgaa agcactttac cacattatgt ctcgtgttag 101 aaatactttg gaaaagatca gagacccaca agtacagtcc agcatttgtg 151 aagctgccta tcaacatgtt cgacctgtac ttaaagaatc tctaatcaat 201 tgtccttacg cgcttaatga ttatgaagca gacacccttg agaatcttgg 251 tgtcacaatt aacccccatg caatccaaac acacacacat gccgcagcca 301 aagtagtcga aaatcgtatg cttgaaattg ttggacatca cttgcctaaa 351 gatgaaaaag taactttcat cttcctcaaa cgtagcaagc tgcgttacat 401 gagaagagct gctgtgcata aagatgtctt tgtcaatcat aacattgaac 451 caaaagactt cttcaggtat gatgaagagt ctacatcaac cagcttttcc 501 gttgatacga gaatcgcata catttcagat tctctacact ttatggaacc 551 tgctgatgtg actcacttgt ttgaccgttg ccaaaacctt aaaacattga 601 tggcaactgt tgtactacct gtggaagcta tacacagaca gacatctcta 651 ttccctgcga tttactccat taactacaat gaagaaggct ttgagtatat 701 cccaggatca cacggtggtg gggcatattt ccacaaatat gaaaccctag 751 aatggctcaa atactctaga ttcattggac atgatccatt gactggttta 801 aaatacacca ttacgattca aatggtggag agtcttggtg ccaaccacct 851 tttcctcttc caaagaggaa actttgagac gccgctatac aggacgtttc 901 aaaagaatag ttttgtgaca ttcccaaata tattccatcc ccgacacgtc 951 aatgccacaa aacctatgcc tagatcaagg gccatacagc tgtacttata 1001 tgtgaaatca gtaaataaag ttacgcaaag agatatattt gccaaggtta 1051 gacaactgat ttccactgct gagctagaat tgtatgaccc tgatgaactc 1101 acgcacgttg taaattattt cacatatgtg tcacaactgt catctatcaa 1151 tgattatgac aacatgctca aatccagttt cttcaaaaaa ctggttgcac 1201 ccatgcaaca cgactggagg tgcatgattg aattcttccg gggaaagagt 1251 gacttcaatc aactgctcac agctcttcaa tggaaagatt tttcctatac 1301 tattaagact gaagagcttg taattactac acacactgct ataggacaag 1351 caataagcaa tgcagctacc acatataaag aaagaaggca gctgactcaa 1401 ttggtcaaaa aaggtacaat atccttagca gattttgaac agagagaacc 1451 tgaaataact tacactgagt ttgagcctga aactaggccc caagtggact 1501 gcgttactaa ttataataat gcagtaaaaa atttaggtct ttctgcactt 1551 gatgaacagc ctcaatgttc atcttctagc agtcatatac cctgcaatga 1601 aatatcctta gcaatgactg atgacgacaa tgctgcggcc attcatgaaa 1651 ttgaatctct attgtctgaa ccgataatag ctcctcaact cccagcattg 1701 ccacacaaga catgggccag ttatgcttca gacacttcat ccatgaagaa 1751 ccgtgagatt gagaacataa ttgctgagct tgaaatctca cggaaggaaa 1801 ataatgtgca gcaaactact catgattacc atgcagtttt tgacacagct 1851 cagagctccg gagatctccc atggaaagca tggattccac ttctgaatgc 1901 acacggcttc aagggagacc aacttcaata cagtccggat ggcaaagtga 1951 ttcagccaat ccaggacatc aataacaaaa caccaagatc tgagtaccca 2001 tccagcattc ctgcagatct tgtgaataca ctgcgaaaca ttaaaagagc 2051 agtgtatgcc attcctatta gccatcgaag ggcaagtgct tacagctctg 2101 atatcaaaaa caataggacc ggcaaattac tctgttccca atcaaaagaa 2151 tggagggaaa gttttgcttt caaaatgcaa catgaagaca tcgttaaatc 2201 tggagtagtc attcatggct gtggcggctc tggaaaatca caagcattac 2251 aaaactttct cagaactctt ggcgactcta atgactgctg cacagtggtt 2301 gtgccaactg ttgaactcag aaatgattgg gtgaacaaat tgtgtaagct 2351 acccatggaa cacattaaaa catttgaaaa agcaatgatt caaccaggat 2401 tcccagttgt tatctttgat gactacacta aattgccacc tggttacatt 2451 gaagcctatt tgttccacca tgccaacact gaacttttca ttcttactgg 2501 agactcgcgg caaagtgtat atcatgagtc caacaatgaa gcatacattg 2551 cctcattaga tgaagccgtc gcttattatg ctaactactg tggattttac 2601 ctaaatgcta cacacagaaa tgttcgcagt ttggccaata agctaggtgt 2651 ttacagtgag aaagaaggtc acctcaaaat tacctttgcc tcaaatgctc 2701 tacaaaagtg caaagtgcca attttggtgc cctctcaaat gaagaagagt 2751 gctatgcaag acatagggca caaagccatg acctacgctg ggtgtcaagg 2801 gcttactgca ccgagagtcc aaattttgct tgacaaccac acacaacact 2851 gctcagacag ggtgctgtac acttgtctct ccagagctgt ggattccatc 2901 cactttatca atacaggccc aaacaattct gaattttggg acaagcttga 2951 ggcaacacca tacctcaaag catttattga tacttacaga gatgagaaaa 3001 cagaaatgct caattctaag cctgctgatg acagtcccgc tgagcctgaa 3051 gctccattga ctcactttcc agtgtcaaac ggcaataact tggaaaagtt 3101 agcttcagcg cttcctgaaa aatttgcaag agagttatat gataaacacc 3151 atggatattc taatacaatc caaactgaaa atccagtggt gcaacttttc 3201 cagcatcaac aagccaaaga tgaaacactt ttctgggcaa caatagaagc 3251 tagactttct attacaactc cggaagccaa cttacgagaa tttgtgctaa 3301 agaaagatgt tggagatatc ttgtttttca attaccacaa tgtcatgtgc 3351 ttacctgccg acccagtgga tttcgagcca agaacatggg aaatatgtgc 3401 tgctgaagtt aaaaatacat acttagccaa accaatggct aacttgatca 3451 atgctgctag cagacaatct cctgatttcg acgctaacaa aatttccctg 3501 ttcctaaaat ctcaatgggt caagaaagtg gaaaaattag gtgctgtcaa 3551 gtcaaagcct ggccagacca ttgcagcttt catgcaacaa acagtgatgt 3601 tgtatgggac catggccaga tacctcagaa agatgagaca aagatttcaa 3651 ccaaaacata ttttcatcaa ttgtgaaaca acaactgata atctgaacca 3701 atttgttaaa caaggttgga actttaacag aacagctcag acaaatgatt 3751 tcacagcttt tgaccaatca caagatggtg caatgcttca atttgaagtc 3801 atgaaggcaa aattcttcaa tatccctgcc gacatcattg aaggatacat 3851 caacatcaaa ttgaacgcca aaatttttct tggcacattg tccattatga 3901 ggttgtctgg tgaaggtcca acttttgatg ccaacacaga atgttcaata 3951 gcatatactg ctacaagata ccatcttgat tctacagtca agcaggttta 4001 tgctggagat gatatggcat tagatggagt tgtccaagaa aaaccctctt 4051 ttaaaaaact acagaacaag cttaaactca cctcaaagac actatttcca 4101 aaacaggtta aaggtgatta tgctgaattc tgtggttgga ctttcactcc 4151 tggtggtatc attaaaaacc ctttgaaaat gcatgcttcc attatgttgc 4201 aagaggcaat cggcaattta cacactgctg ccagatcata tgccattgac 4251 atgaaacatt cataccaaat gggtgatgag ctgcacaatt acttaacacc 4301 agatgaagct gaacaacact tccttgctgt tcggaagttg cacaagttac 4351 accaaggaga agcaatgaga cttggtgaaa agagccctcc aaaagcaaca 4401 cattgagggg ttaagttttc cccagttcga aatggaaaga tcaactctga 4451 ttaatttact tcaattgcac cacttcgagc caaaactcag tgttgaagga 4501 accatagttg tgcacggaat tgcaggcact gggaaaacca ctttacttag 4551 gactttattt tctgcttacc ctagcttagt tataggttca cctaggcctt 4601 gctatttaga taaacaaaac aaaatttcac aagtttgctt atcttgcttt 4651 cccaataccc attgtgatat tgtcgatgag tatcatttgc tagaaagttt 4701 tctagaacca aaattggcta tctttggtga cccctgtcaa tgcacataca 4751 ttgagagact tagagtccca cattacactt ccttcagaac tcatagattt 4801 ggaaagtcaa ctgctgagat tttgaacaaa ctgtttgacc ttaatatagt 4851 ctcagttaag aaagaagacg acatcgttga attctttaac ccttttgaag 4901 ttgaccccac tgagcatatc tctgcctctg aagaagaagt cttggacttt 4951 gtttctgacc aagtggtgac cactagctca gaggaactag caggacttga 5001 gtttgcagaa acaactttct actgcacaac attggccgca gctgttgctg 5051 aaaatcctgc taagactttc atctctctga ctagacacac ccacaaactc 5101 accattgggg aactaaatgc caggtctaac tcctagagct gacctcactg 5151 acacatacaa aatcattgcc attgctttct tgttgtcagc ttgcatttac 5201 ttccaaaata gccactacca acctgttgct ggagacaact tgcaccgttt 5251 gccttttggt ggccaatatc aagacggcac caaaaagata tcctattttc 5301 cacaacagca gtcatacttt cattctggaa acaaattaaa tgtcctcata 5351 cttatcttca ttctcacgtt gggtattgtc ctcaccaata aatttagttt 5401 tagctttagt cgtactactc accagcattc ttgctataac acacattcag 5451 caaccaacaa tacacaacca ttgtcaggcc atcattgaca gtgctgcaat 5501 agtcataaca aattgtgaga acacaccaga agtgcttaaa gcaataaact 5551 tctccccttg gaacgggtta agttttccta aatttgaaaa ttagtattga 5601 gtgttcacaa aaatcaactt caataaacaa tcatgcctga cacaacacct 5651 gttgctgcca cttcaagtgc accacccaca gccaaagatg ctggtgccaa 5701 agctccttct gacttctcaa atcccaatac agctcctagt ctcagtgatt 5751 tgaagaaagt caagtatgtc tccaccgtga cctccgtggc cacaccagct 5801 gaaattgaag ccctaggcaa aatcttcacc gctatgggcc ttgccgccaa 5851 tgagactggt ccggccatgt gggatctagc tcgtgcatat gctgatgtgc 5901 agagttctaa atcggcacag ctgattggag ctaccccttc caaccctgca 5951 ctatcacgcc gagcccttgc tgctcagttt gatcgaatca atataacccc 6001 caggcaattt tgcatgtact ttgccaaagt tgtttggaac atacttctcg 6051 acagcaacat tccaccagca aattgggcca aacttggtta ccaagaagat 6101 acaaaatttg ctgcatttga cttcttcgat ggagtcacca accctgccag 6151 cctgcagcct gctgatggtc ttatcaggca gccaaatgaa aaagaactag 6201 ctgctcactc cgtagctaag tacggcgcct tggctaggca aaagatctcc 6251 acaggtaatt atattaccac acttggagaa gtcacacgtg gacacatggg 6301 aggagctaac accatgtacg cgatagacgc accccctgaa ctttaaacac 6351 tcgaaactta atcagagtgg ggttttctac agtttatttt cctaattatt 6401 tctttgaaat aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa