Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate Sp-13, complete genome.

ACC No: AF484251

Dated: 2005-03-24 | Length: 6450 | CRC: -1066989282

                !!NA_SEQUENCE 1.0
ID   AF484251   standard; genomic RNA; VRL; 6450 BP.
XX
AC   AF484251;
XX
SV   AF484251.1
XX
DT   08-JUL-2002 (Rel. 72, Created)
DT   24-MAR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate Sp-13, complete genome.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-6450
RX   PUBMED; 12376761.
RA   Aguilar J.M., Hernandez-Gallardo M.D., Cenis J.L., Lacasa A., Aranda M.A.;
RT   "Complete sequence of the Pepino mosaic virus RNA genome";
RL   Arch. Virol. 147(10):2009-2015(2002).
XX
RN   [2]
RP   1-6450
RA   Aguilar J.M., Hernandez-Gallardo M.D., Cenis J.L., Lacasa A., Aranda M.A.;
RT   ;
RL   Submitted (15-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL   Hortofruticultura Subtropical, Consejo Superior de Investigaciones
RL   Cientificas (CSIC), Estacion Experimental La Mayora-CSIC, Algarrobo-Costa,
RL   Malaga 29750, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .6450
FT                   /country="Spain"
FT                   /db_xref="taxon:112229"
FT                   /mol_type="genomic RNA"
FT                   /organism="Pepino mosaic virus"
FT                   /isolate="Sp-13"
FT                   /specific_host="tomato"
FT   5'UTR           1. .86
FT   CDS             87. .4406
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JSN4"
FT                   /db_xref="InterPro:IPR000606"
FT                   /db_xref="InterPro:IPR001788"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="InterPro:IPR007095"
FT                   /db_xref="UniProt/TrEMBL:Q8JSN4"
FT                   /note="RdRp"
FT                   /product="RNA dependent RNA polymerase"
FT                   /protein_id="AAM76161.1"
FT                   /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND
FT                   YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY
FT                   MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLHFMEPADVTHLFD
FT                   RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE
FT                   WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT                   IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH
FT                   VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT                   KDFSYTIKTEELVITTHTAIGQAISNAATTYKERRQLTQLVKKGTISLADFEQREPEIT
FT                   YTEFEPETRPQVDCVTNYNNAVKNLGLSALDEQPQCSSSSSHIPCNEISLAMTDDDNAA
FT                   AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ
FT                   TTHDYHAVFDTAQSSGDLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS
FT                   EYPSSIPADLVNTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWRESFA
FT                   FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC
FT                   KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY
FT                   HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA
FT                   LQKCKVPILVPSQMKKSAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC
FT                   LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA
FT                   PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL
FT                   FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE
FT                   VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM
FT                   QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAF
FT                   DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT
FT                   ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKLKLTSKTLFPKQVKG
FT                   DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY
FT                   LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT   CDS             4432. .5136
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JSN3"
FT                   /db_xref="InterPro:IPR000606"
FT                   /db_xref="UniProt/TrEMBL:Q8JSN3"
FT                   /product="TGB1 protein"
FT                   /protein_id="AAM76162.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGTIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC
FT                   TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT                   SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   CDS             5117. .5488
FT                   /codon_start=1
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProt/TrEMBL:Q8JJH7"
FT                   /product="TGB2 protein"
FT                   /protein_id="AAM76163.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   CDS             5340. .5594
FT                   /codon_start=1
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProt/TrEMBL:Q8JSN2"
FT                   /product="TGB3 protein"
FT                   /protein_id="AAM76164.1"
FT                   /translation="MSSYLSSFSRWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QAIIDSAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   CDS             5633. .6346
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JJF2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProt/TrEMBL:Q8JJF2"
FT                   /note="CP"
FT                   /product="coat protein"
FT                   /protein_id="AAM76165.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
FT   3'UTR           6347. .6450
FT   polyA_site      6410
XX
SQ   Sequence 6450 BP; 2098 A; 1463 C; 1175 G; 1714 T; 0 other;

 AF484251  Length: 6450  March 29, 2005 13:35  Type: N  Check: 315  ..

       1  gaaaacaaaa taaataaata aatatacaaa gttaaactaa cacaacataa
      51  ccacgtggaa aaacagcgaa agcactttac cacattatgt ctcgtgttag
     101  aaatactttg gaaaagatca gagacccaca agtacagtcc agcatttgtg
     151  aagctgccta tcaacatgtt cgacctgtac ttaaagaatc tctaatcaat
     201  tgtccttacg cgcttaatga ttatgaagca gacacccttg agaatcttgg
     251  tgtcacaatt aacccccatg caatccaaac acacacacat gccgcagcca
     301  aagtagtcga aaatcgtatg cttgaaattg ttggacatca cttgcctaaa
     351  gatgaaaaag taactttcat cttcctcaaa cgtagcaagc tgcgttacat
     401  gagaagagct gctgtgcata aagatgtctt tgtcaatcat aacattgaac
     451  caaaagactt cttcaggtat gatgaagagt ctacatcaac cagcttttcc
     501  gttgatacga gaatcgcata catttcagat tctctacact ttatggaacc
     551  tgctgatgtg actcacttgt ttgaccgttg ccaaaacctt aaaacattga
     601  tggcaactgt tgtactacct gtggaagcta tacacagaca gacatctcta
     651  ttccctgcga tttactccat taactacaat gaagaaggct ttgagtatat
     701  cccaggatca cacggtggtg gggcatattt ccacaaatat gaaaccctag
     751  aatggctcaa atactctaga ttcattggac atgatccatt gactggttta
     801  aaatacacca ttacgattca aatggtggag agtcttggtg ccaaccacct
     851  tttcctcttc caaagaggaa actttgagac gccgctatac aggacgtttc
     901  aaaagaatag ttttgtgaca ttcccaaata tattccatcc ccgacacgtc
     951  aatgccacaa aacctatgcc tagatcaagg gccatacagc tgtacttata
    1001  tgtgaaatca gtaaataaag ttacgcaaag agatatattt gccaaggtta
    1051  gacaactgat ttccactgct gagctagaat tgtatgaccc tgatgaactc
    1101  acgcacgttg taaattattt cacatatgtg tcacaactgt catctatcaa
    1151  tgattatgac aacatgctca aatccagttt cttcaaaaaa ctggttgcac
    1201  ccatgcaaca cgactggagg tgcatgattg aattcttccg gggaaagagt
    1251  gacttcaatc aactgctcac agctcttcaa tggaaagatt tttcctatac
    1301  tattaagact gaagagcttg taattactac acacactgct ataggacaag
    1351  caataagcaa tgcagctacc acatataaag aaagaaggca gctgactcaa
    1401  ttggtcaaaa aaggtacaat atccttagca gattttgaac agagagaacc
    1451  tgaaataact tacactgagt ttgagcctga aactaggccc caagtggact
    1501  gcgttactaa ttataataat gcagtaaaaa atttaggtct ttctgcactt
    1551  gatgaacagc ctcaatgttc atcttctagc agtcatatac cctgcaatga
    1601  aatatcctta gcaatgactg atgacgacaa tgctgcggcc attcatgaaa
    1651  ttgaatctct attgtctgaa ccgataatag ctcctcaact cccagcattg
    1701  ccacacaaga catgggccag ttatgcttca gacacttcat ccatgaagaa
    1751  ccgtgagatt gagaacataa ttgctgagct tgaaatctca cggaaggaaa
    1801  ataatgtgca gcaaactact catgattacc atgcagtttt tgacacagct
    1851  cagagctccg gagatctccc atggaaagca tggattccac ttctgaatgc
    1901  acacggcttc aagggagacc aacttcaata cagtccggat ggcaaagtga
    1951  ttcagccaat ccaggacatc aataacaaaa caccaagatc tgagtaccca
    2001  tccagcattc ctgcagatct tgtgaataca ctgcgaaaca ttaaaagagc
    2051  agtgtatgcc attcctatta gccatcgaag ggcaagtgct tacagctctg
    2101  atatcaaaaa caataggacc ggcaaattac tctgttccca atcaaaagaa
    2151  tggagggaaa gttttgcttt caaaatgcaa catgaagaca tcgttaaatc
    2201  tggagtagtc attcatggct gtggcggctc tggaaaatca caagcattac
    2251  aaaactttct cagaactctt ggcgactcta atgactgctg cacagtggtt
    2301  gtgccaactg ttgaactcag aaatgattgg gtgaacaaat tgtgtaagct
    2351  acccatggaa cacattaaaa catttgaaaa agcaatgatt caaccaggat
    2401  tcccagttgt tatctttgat gactacacta aattgccacc tggttacatt
    2451  gaagcctatt tgttccacca tgccaacact gaacttttca ttcttactgg
    2501  agactcgcgg caaagtgtat atcatgagtc caacaatgaa gcatacattg
    2551  cctcattaga tgaagccgtc gcttattatg ctaactactg tggattttac
    2601  ctaaatgcta cacacagaaa tgttcgcagt ttggccaata agctaggtgt
    2651  ttacagtgag aaagaaggtc acctcaaaat tacctttgcc tcaaatgctc
    2701  tacaaaagtg caaagtgcca attttggtgc cctctcaaat gaagaagagt
    2751  gctatgcaag acatagggca caaagccatg acctacgctg ggtgtcaagg
    2801  gcttactgca ccgagagtcc aaattttgct tgacaaccac acacaacact
    2851  gctcagacag ggtgctgtac acttgtctct ccagagctgt ggattccatc
    2901  cactttatca atacaggccc aaacaattct gaattttggg acaagcttga
    2951  ggcaacacca tacctcaaag catttattga tacttacaga gatgagaaaa
    3001  cagaaatgct caattctaag cctgctgatg acagtcccgc tgagcctgaa
    3051  gctccattga ctcactttcc agtgtcaaac ggcaataact tggaaaagtt
    3101  agcttcagcg cttcctgaaa aatttgcaag agagttatat gataaacacc
    3151  atggatattc taatacaatc caaactgaaa atccagtggt gcaacttttc
    3201  cagcatcaac aagccaaaga tgaaacactt ttctgggcaa caatagaagc
    3251  tagactttct attacaactc cggaagccaa cttacgagaa tttgtgctaa
    3301  agaaagatgt tggagatatc ttgtttttca attaccacaa tgtcatgtgc
    3351  ttacctgccg acccagtgga tttcgagcca agaacatggg aaatatgtgc
    3401  tgctgaagtt aaaaatacat acttagccaa accaatggct aacttgatca
    3451  atgctgctag cagacaatct cctgatttcg acgctaacaa aatttccctg
    3501  ttcctaaaat ctcaatgggt caagaaagtg gaaaaattag gtgctgtcaa
    3551  gtcaaagcct ggccagacca ttgcagcttt catgcaacaa acagtgatgt
    3601  tgtatgggac catggccaga tacctcagaa agatgagaca aagatttcaa
    3651  ccaaaacata ttttcatcaa ttgtgaaaca acaactgata atctgaacca
    3701  atttgttaaa caaggttgga actttaacag aacagctcag acaaatgatt
    3751  tcacagcttt tgaccaatca caagatggtg caatgcttca atttgaagtc
    3801  atgaaggcaa aattcttcaa tatccctgcc gacatcattg aaggatacat
    3851  caacatcaaa ttgaacgcca aaatttttct tggcacattg tccattatga
    3901  ggttgtctgg tgaaggtcca acttttgatg ccaacacaga atgttcaata
    3951  gcatatactg ctacaagata ccatcttgat tctacagtca agcaggttta
    4001  tgctggagat gatatggcat tagatggagt tgtccaagaa aaaccctctt
    4051  ttaaaaaact acagaacaag cttaaactca cctcaaagac actatttcca
    4101  aaacaggtta aaggtgatta tgctgaattc tgtggttgga ctttcactcc
    4151  tggtggtatc attaaaaacc ctttgaaaat gcatgcttcc attatgttgc
    4201  aagaggcaat cggcaattta cacactgctg ccagatcata tgccattgac
    4251  atgaaacatt cataccaaat gggtgatgag ctgcacaatt acttaacacc
    4301  agatgaagct gaacaacact tccttgctgt tcggaagttg cacaagttac
    4351  accaaggaga agcaatgaga cttggtgaaa agagccctcc aaaagcaaca
    4401  cattgagggg ttaagttttc cccagttcga aatggaaaga tcaactctga
    4451  ttaatttact tcaattgcac cacttcgagc caaaactcag tgttgaagga
    4501  accatagttg tgcacggaat tgcaggcact gggaaaacca ctttacttag
    4551  gactttattt tctgcttacc ctagcttagt tataggttca cctaggcctt
    4601  gctatttaga taaacaaaac aaaatttcac aagtttgctt atcttgcttt
    4651  cccaataccc attgtgatat tgtcgatgag tatcatttgc tagaaagttt
    4701  tctagaacca aaattggcta tctttggtga cccctgtcaa tgcacataca
    4751  ttgagagact tagagtccca cattacactt ccttcagaac tcatagattt
    4801  ggaaagtcaa ctgctgagat tttgaacaaa ctgtttgacc ttaatatagt
    4851  ctcagttaag aaagaagacg acatcgttga attctttaac ccttttgaag
    4901  ttgaccccac tgagcatatc tctgcctctg aagaagaagt cttggacttt
    4951  gtttctgacc aagtggtgac cactagctca gaggaactag caggacttga
    5001  gtttgcagaa acaactttct actgcacaac attggccgca gctgttgctg
    5051  aaaatcctgc taagactttc atctctctga ctagacacac ccacaaactc
    5101  accattgggg aactaaatgc caggtctaac tcctagagct gacctcactg
    5151  acacatacaa aatcattgcc attgctttct tgttgtcagc ttgcatttac
    5201  ttccaaaata gccactacca acctgttgct ggagacaact tgcaccgttt
    5251  gccttttggt ggccaatatc aagacggcac caaaaagata tcctattttc
    5301  cacaacagca gtcatacttt cattctggaa acaaattaaa tgtcctcata
    5351  cttatcttca ttctcacgtt gggtattgtc ctcaccaata aatttagttt
    5401  tagctttagt cgtactactc accagcattc ttgctataac acacattcag
    5451  caaccaacaa tacacaacca ttgtcaggcc atcattgaca gtgctgcaat
    5501  agtcataaca aattgtgaga acacaccaga agtgcttaaa gcaataaact
    5551  tctccccttg gaacgggtta agttttccta aatttgaaaa ttagtattga
    5601  gtgttcacaa aaatcaactt caataaacaa tcatgcctga cacaacacct
    5651  gttgctgcca cttcaagtgc accacccaca gccaaagatg ctggtgccaa
    5701  agctccttct gacttctcaa atcccaatac agctcctagt ctcagtgatt
    5751  tgaagaaagt caagtatgtc tccaccgtga cctccgtggc cacaccagct
    5801  gaaattgaag ccctaggcaa aatcttcacc gctatgggcc ttgccgccaa
    5851  tgagactggt ccggccatgt gggatctagc tcgtgcatat gctgatgtgc
    5901  agagttctaa atcggcacag ctgattggag ctaccccttc caaccctgca
    5951  ctatcacgcc gagcccttgc tgctcagttt gatcgaatca atataacccc
    6001  caggcaattt tgcatgtact ttgccaaagt tgtttggaac atacttctcg
    6051  acagcaacat tccaccagca aattgggcca aacttggtta ccaagaagat
    6101  acaaaatttg ctgcatttga cttcttcgat ggagtcacca accctgccag
    6151  cctgcagcct gctgatggtc ttatcaggca gccaaatgaa aaagaactag
    6201  ctgctcactc cgtagctaag tacggcgcct tggctaggca aaagatctcc
    6251  acaggtaatt atattaccac acttggagaa gtcacacgtg gacacatggg
    6301  aggagctaac accatgtacg cgatagacgc accccctgaa ctttaaacac
    6351  tcgaaactta atcagagtgg ggttttctac agtttatttt cctaattatt
    6401  tctttgaaat aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa