Sequence of DPV Wheat streak mosaic virus

Wheat streak mosaic virus isolate CO85 polyprotein gene, partial cds.

ACC No: AF511601

Dated: 2003-06-20 | Length: 1267 | CRC: -1791462208

                !!NA_SEQUENCE 1.0
ID   AF511601   standard; RNA; VRL; 1267 BP.
XX
AC   AF511601;
XX
SV   AF511601.1
XX
DT   06-JUN-2002 (Rel. 72, Created)
DT   20-JUN-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Wheat streak mosaic virus isolate CO85 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Wheat streak mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Tritimovirus.
XX
RN   [1]
RP   1-1267
RX   MEDLINE; 22317629.
RX   PUBMED; 12429516.
RA   Stenger D.C., Seifers D.L., French R.;
RT   "Patterns of polymorphism in wheat streak mosaic virus: sequence space
RT   explored by a clade of closely related viral genotypes rivals that between
RT   the most divergent strains";
RL   Virology 302(1):58-70(2002).
XX
RN   [2]
RP   1-1267
RA   Stenger D.C., Seifers D.L., French R.;
RT   ;
RL   Submitted (14-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, University of Nebraska, 344 Keim Hall, Lincoln, NE 68583, USA
XX
DR   GOA; Q8JR10.
DR   SPTREMBL; Q8JR10; Q8JR10.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1267
FT                   /db_xref="taxon:31741"
FT                   /mol_type="genomic RNA"
FT                   /organism="Wheat streak mosaic virus"
FT                   /isolate="CO85"
FT   CDS             <1. .1134
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JR10"
FT                   /db_xref="SPTREMBL:Q8JR10"
FT                   /note="coat protein cistron of polyprotein"
FT                   /product="polyprotein"
FT                   /protein_id="AAM48195.1"
FT                   /translation="VEDLYLTGTRTDLGEEIKECGEQYCVYESSEAATDAVLAAANAGT
FT                   GSASSSGSAQSSQSASTASGSGSSSSGSGSGAAGGSGSGSAQTQSNNVSVMAGLDTGGA
FT                   KTGQGSGSKGTGGSFTSNPVRTGGRATDVQDQTPGLVFPTPKITTKAIYMPKTVRDKIK
FT                   PEMINNMIRYQPRAELIDNRYATTEQLNTWIKEASEGLDVTEDVFINTLLPGWVYHCII
FT                   NTTSPENRALGTWRVVNNAGKDNEQQLEFKIEPMYKAAKPSLRAIMRHFGEGARVMIEE
FT                   SVRIGKPIIPRGFDKAGVLSINNIVAACDFIMRGADDTPNFVQVQNSVAVNRLRGIQNK
FT                   LFAQARLSAGTNEDNSRHDADDVRENTHSFNGVNALA"
XX
SQ   Sequence 1267 BP; 386 A; 269 C; 346 G; 266 T; 0 other;

  AF511601  Length: 1267  July 1, 2003 08:55  Type: N  Check: 1398  ..

       1  gttgaggatt tgtacttgac tgggactcga acggatttag gagaggagat
      51  taaagaatgt ggagagcaat actgcgtgta cgaatcgagt gaggccgcaa
     101  ccgacgcagt cttggcggca gcaaatgcag gaactggtag tgcatcgagt
     151  agtggaagtg ctcaatcaag tcagagcgca agtactgcta gcggatcagg
     201  gagctcatca tcaggatcag gttctggagc agcgggtgga tcaggttctg
     251  gatcagcaca aacacaatct aataacgtat ctgtcatggc tggcctcgac
     301  acgggaggag ctaagacagg tcaaggatca ggatcaaaag ggacgggtgg
     351  ttcattcaca tcgaatcccg tgcgaactgg aggccgagca acggatgtgc
     401  aagatcagac accaggttta gtgtttccaa caccaaagat cacaacaaag
     451  gccatataca tgccaaaaac tgtacgcgac aagataaaac ctgaaatgat
     501  aaataacatg atcagatacc aaccgcgtgc ggaacttatc gacaacagat
     551  atgcaacaac tgaacaactc aacacctgga taaaagaggc atctgaaggg
     601  cttgacgtga cagaggatgt tttcataaac accttgcttc caggatgggt
     651  ctaccactgc ataatcaaca caacgagccc agagaacaga gcactaggaa
     701  cttggcgtgt tgtgaacaat gcaggcaagg acaatgagca gcaactcgag
     751  tttaaaattg agccgatgta caaagctgcg aagccatcac ttcgagccat
     801  tatgcgccac tttggtgagg gagcccgagt gatgatcgag gagagtgttc
     851  ggattggaaa acctatcata ccaaggggct tcgacaaggc cggtgtgcta
     901  agcatcaaca atattgtggc agcgtgtgat ttcatcatgc gcggtgcaga
     951  tgacacacca aattttgtgc aagtgcagaa cagcgttgca gtaaacaggc
    1001  tacgcggaat acagaacaag ctgtttgcac aggcacgact gagtgcgggt
    1051  actaatgagg acaactcacg tcatgatgca gatgatgtga gggagaacac
    1101  gcacagtttc aatggtgtaa acgctcttgc gtgagcacag tagaaactac
    1151  aaatccacga gtaccaggat ttgagcgaaa taacgctgcg tttcgttaac
    1201  ccttcgttgt tactaggtgt gtacttctcc acgagaggcg tgcattcttg
    1251  gtagctatgt gtgggtt