Sequence of DPV Wheat streak mosaic virus

Wheat streak mosaic virus isolate CO87 polyprotein gene, partial cds.

ACC No: AF511602

Dated: 2003-06-20 | Length: 1267 | CRC: -1132521780

                !!NA_SEQUENCE 1.0
ID   AF511602   standard; RNA; VRL; 1267 BP.
XX
AC   AF511602;
XX
SV   AF511602.1
XX
DT   06-JUN-2002 (Rel. 72, Created)
DT   20-JUN-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Wheat streak mosaic virus isolate CO87 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Wheat streak mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Tritimovirus.
XX
RN   [1]
RP   1-1267
RX   MEDLINE; 22317629.
RX   PUBMED; 12429516.
RA   Stenger D.C., Seifers D.L., French R.;
RT   "Patterns of polymorphism in wheat streak mosaic virus: sequence space
RT   explored by a clade of closely related viral genotypes rivals that between
RT   the most divergent strains";
RL   Virology 302(1):58-70(2002).
XX
RN   [2]
RP   1-1267
RA   Stenger D.C., Seifers D.L., French R.;
RT   ;
RL   Submitted (14-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, University of Nebraska, 344 Keim Hall, Lincoln, NE 68583, USA
XX
DR   GOA; Q8JR09.
DR   SPTREMBL; Q8JR09; Q8JR09.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1267
FT                   /db_xref="taxon:31741"
FT                   /mol_type="genomic RNA"
FT                   /organism="Wheat streak mosaic virus"
FT                   /isolate="CO87"
FT   CDS             <1. .1134
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JR09"
FT                   /db_xref="SPTREMBL:Q8JR09"
FT                   /note="coat protein cistron of polyprotein"
FT                   /product="polyprotein"
FT                   /protein_id="AAM48196.1"
FT                   /translation="VEDLYLTGTRTDLGEEIKECGEQYCVYESSEAATDAVLAAANAGT
FT                   GSEPSSGSTQSSLSASIASGSGSSPSGSGSGAVGESGSGSAQTQSNNVSAMAGLDMGGT
FT                   KTGQGSGSKGTSGSFVSNPVRTGGRATDVQDQTPGLVFPAPKITTKAIYMPKTVRDKIK
FT                   PEMINNMIKYQPRAELIDNRYATTEQLNTWIEEASEGLDVTEEVFINTLLPGWVYHCII
FT                   NTTSPENRALGTWRVVNNAGKDNEQQLEFKIEPMYKAAKPSLRAIMRHFGEGARVMIEE
FT                   SVRIGKPIIPRGFDKAGVLSINNIVAACDFIMRGADDTPNFVQVQNSVAVNRLRGIQNK
FT                   LFAQARLSAGTNEDNSRHDADDVRENTHSFNGVNALA"
XX
SQ   Sequence 1267 BP; 385 A; 267 C; 348 G; 267 T; 0 other;

  AF511602  Length: 1267  July 1, 2003 08:55  Type: N  Check: 779  ..

       1  gttgaggatt tgtacttgac tgggactcga acggatttag gagaggagat
      51  taaggaatgt ggagagcaat actgcgtgta cgaatcgagt gaggccgcaa
     101  ccgacgctgt cttggcggca gcaaatgcag gaactggtag tgaaccgagc
     151  agtggaagta ctcaatcaag tctgagcgca agtattgcta gcggatcagg
     201  gagctcacca tcaggatcag gttctggagc agtgggtgaa tcaggttctg
     251  gatcagcaca aacacaatct aataacgtat ctgccatggc tggcctcgac
     301  atgggaggaa ctaagacagg tcaaggatca ggatcaaaag ggacgagtgg
     351  ttcattcgta tcgaatcccg tgcgaactgg aggccgagca acggatgtgc
     401  aagatcagac accagggtta gtgtttccag caccaaagat cacaacaaag
     451  gccatataca tgccaaaaac tgtacgcgac aagataaagc ctgaaatgat
     501  aaataacatg atcaaatacc aaccgcgtgc ggaacttatc gacaacagat
     551  atgcaacaac tgaacagctc aacacctgga tagaagaggc atctgaaggg
     601  cttgacgtga cagaggaagt tttcataaac accttacttc caggatgggt
     651  ctaccactgc ataatcaaca caacgagccc agagaacaga gcactaggaa
     701  cttggcgtgt tgtgaataat gcaggcaagg acaatgagca gcaactcgag
     751  tttaaaattg aaccgatgta caaagccgcg aagccatcac ttcgagccat
     801  tatgcgtcac tttggcgagg gagctcgagt gatgatcgag gagagtgttc
     851  ggattggaaa acctatcata ccaaggggct tcgacaaggc cggtgtgcta
     901  agcatcaaca atattgtggc agcgtgtgat ttcattatgc gcggtgcaga
     951  tgacacacca aattttgtgc aagtgcagaa cagcgttgca gtgaacaggc
    1001  tacgcggaat acagaacaag ctgtttgcac aggcacgact gagtgcgggt
    1051  actaatgagg acaactcacg tcatgatgca gatgatgtga gggagaacac
    1101  gcacagtttc aatggtgtaa acgctcttgc gtgagcacag tagaaaccac
    1151  aaatccacga gtaccaggat ttgagcggaa taacgctgcg tttcgttaac
    1201  ccttcgttgt tactaggtgt gtacttctcc acgagaggcg tgcattcttg
    1251  gtagctatgt gtgggtt