Sequence of DPV Wheat streak mosaic virus

Wheat streak mosaic virus isolate LG92 polyprotein gene, partial cds.

ACC No: AF511626

Dated: 2009-02-19 | Length: 1267 | CRC: 28251526

                
ID   AF511626; SV 1; linear; genomic RNA; STD; VRL; 1267 BP.
XX
AC   AF511626;
XX
DT   06-JUN-2002 (Rel. 72, Created)
DT   19-FEB-2009 (Rel. 99, Last updated, Version 5)
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DE   Wheat streak mosaic virus isolate LG92 polyprotein gene, partial cds.
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KW   .
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OS   Wheat streak mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Tritimovirus.
XX
RN   [1]
RP   1-1267
RX   DOI; 10.1006/viro.2001.1569.
RX   PUBMED; 12429516.
RA   Stenger D.C., Seifers D.L., French R.;
RT   "Patterns of polymorphism in wheat streak mosaic virus: sequence space
RT   explored by a clade of closely related viral genotypes rivals that between
RT   the most divergent strains";
RL   Virology 302(1):58-70(2002).
XX
RN   [2]
RP   1-1267
RA   Stenger D.C., Seifers D.L., French R.;
RT   ;
RL   Submitted (14-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS, University of Nebraska, 344 Keim Hall, Lincoln, NE 68583, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1267
FT                   /organism="Wheat streak mosaic virus"
FT                   /isolate="LG92"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:31741"
FT   CDS             <1. .1134
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="coat protein cistron of polyprotein"
FT                   /db_xref="GOA:Q8JQY5"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JQY5"
FT                   /protein_id="AAM48220.1"
FT                   /translation="VEDLYLTGTRTDLGEEIKECGEQYCVYESSEAATDAVLAAANAGT
FT                   GSASSSGSTQSSQSASTASGSGSSPSGSGSGAAGGSGSGSAQTQSNNVSVMAGLDTGGA
FT                   KTGQGSGSKGTGGSFTSNPVRTGGRATDVQDQTPGLVFPAPKITTKAIYMPKTVRDKIK
FT                   PEMINNMIKYQPRAELIDNRYATTEQLNTWIKEASEGLDVTEDVFINTLLPGWVYHCII
FT                   NTTSPENRALGTWRVVNNAGKDNEQQLEFKIEPMYKAAKPSLRAIMRHFGEGARVMIEE
FT                   SVRIGKPIIPRGFDKAGVLSINNIVAACDFIMRGADDTPNFVQVQNSVAVNRLRGIQNK
FT                   LFAQARLSAGTNEDNSRHDADDVRENTHSFNGVNALA"
XX
SQ   Sequence 1267 BP; 387 A; 270 C; 342 G; 268 T; 0 other;

af511626 Length: 1267  19-FEB-2009  Type: N  Check: 2155  ..

       1  gttgaggatt tgtacttgac tgggacccga acggatttag gagaagagat
      51  taaggaatgt ggagagcaat actgcgtgta cgaatcgagt gaggccgcaa
     101  ccgacgctgt cttggcggca gcaaatgcag gaactggtag tgcatcgagt
     151  agtggaagta ctcaatcaag tcagagcgca agtactgcta gcggatcagg
     201  gagttcacca tcaggatcag gttctggagc agcgggtgga tcaggttctg
     251  gatcagcaca aacacaatct aataacgtat ctgtcatggc tggcctcgac
     301  acgggaggag ctaagacagg tcaaggatca ggatcaaaag ggacgggtgg
     351  ttcattcaca tcgaatcccg tgcgaactgg aggccgagca acggatgtgc
     401  aagatcagac accaggttta gtgtttccag caccaaagat cacaacaaag
     451  gccatataca tgccaaaaac tgtacgcgac aagataaaac ctgaaatgat
     501  aaataacatg atcaaatacc aaccgcgtgc tgaacttatc gacaacagat
     551  atgccacaac tgaacaactc aacacctgga taaaagaggc atctgaaggg
     601  cttgacgtga cagaggatgt tttcataaac accttacttc caggatgggt
     651  ctaccactgc ataatcaaca caacgagccc agagaacaga gcactaggaa
     701  cttggcgtgt tgtgaacaat gcaggcaagg acaatgagca gcaactcgag
     751  tttaagattg aaccgatgta caaagctgcg aagccatcac ttcgagccat
     801  tatgcgccac tttggtgagg gagctcgagt gatgatcgag gagagtgttc
     851  gaattggaaa acctatcata ccaaggggct tcgacaaggc cggtgtgcta
     901  agcatcaaca atattgtggc agcgtgtgat ttcatcatgc gcggtgcaga
     951  tgacacacca aattttgtgc aagtgcagaa cagcgttgca gtaaacaggc
    1001  tacgcggaat acagaacaag ctgtttgcac aggcacgact gagtgcgggt
    1051  actaatgagg acaactcacg tcatgatgca gatgatgtga gggagaacac
    1101  gcacagtttc aatggtgtaa acgctcttgc gtgagcacag tagaaactac
    1151  aaatccacga gtaccaggat ttgagcgaaa taacgctgcg tttcgttaac
    1201  ccttcgttgt tactaggtgt gtacttctcc acgagaggcg tgcattcttg
    1251  gtagctatgt gtgggtt