Sequence of DPV Giardia lamblia virus

Giardia lamblia virus, complete genome.

ACC No: AF525216

Dated: 2005-03-25 | Length: 6273 | CRC: -1723631827

                !!NA_SEQUENCE 1.0
ID   AF525216   standard; genomic RNA; VRL; 6273 BP.
XX
AC   AF525216;
XX
SV   AF525216.1
XX
DT   12-AUG-2002 (Rel. 72, Created)
DT   25-MAR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Giardia lamblia virus, complete genome.
XX
KW   .
XX
OS   Giardia lamblia virus
OC   Viruses; dsRNA viruses; Totiviridae; Giardiavirus.
XX
RN   [1]
RP   1-6273
RX   PUBMED; 15713450.
RA   Liu Q., Zhang X., Li J., Ying J., Chen L., Zhao Y., Wei F., Wu T.;
RT   "Giardia lamblia: stable expression of green fluorescent protein mediated
RT   by giardiavirus";
RL   Exp. Parasitol. 109(3):181-187(2005).
XX
RN   [2]
RP   1-6273
RA   Tian Z., Zhang X., Li J., Yin J., Yang J.;
RT   "Genomic sequence of giardiavirus in Giardia lamblia isolated from human in
RT   China";
RL   Unpublished.
XX
RN   [3]
RP   1-6273
RA   Tian Z., Zhang X., Li J., Yian J., Yang J.;
RT   ;
RL   Submitted (19-JUN-2002) to the EMBL/GenBank/DDBJ databases.
RL   Veterinary Preventive Medicine, Changchun University of Agriculture and
RL   Animal Sciences, 175, Xian Road, Changchun, Jilin 130062, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .6273
FT                   /country="China"
FT                   /db_xref="taxon:29255"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Giardia lamblia virus"
FT   CDS             367. .3027
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q8JPV9"
FT                   /note="ORF1"
FT                   /product="capsid protein"
FT                   /protein_id="AAM77693.1"
FT                   /translation="MVWGTGYGNTSPLNPYGFASLHRGGLNPLILAPENITFDTLNTQN
FT                   DHEETYGESPEVPKASIAPAGRQNVPVLQQKQENEDNHALGGSEDAKDEREIQFSAIKT
FT                   LYNYYSEGPSIPIMPHLVNRLRGLDALAKVDATLSKVDMNAAYIFALRPTFPYSYGYKQ
FT                   RFSNRRLTTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNIGVSPHVAEPHMR
FT                   TLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYTP
FT                   ILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTISHSTNMSNRTRYCLHTWSAYKD
FT                   MFRNGIPPQSTFPPTLAPEGSSARILIPAALVTSPMFPWLLVLVSSGPQFFLYSKDASI
FT                   NTVHIGSRGRITSPISDVAHLDLHRLWNLFRFDGYRYIDVVIVGVGRDYVWPYQNGVYV
FT                   HGGKGPKGTDNYENADVHDGIGTIFSSFNNNVNVQTSDLLLGLSTLWNHIATTYATEEE
FT                   VTMAIKIAAAFALVYPVQPIVYSGCSSAFHNHTSYFQPSSENCYTTDTAEVKSTWDTVE
FT                   LSVQVNDAMVLGMTLPFGQPTVSSARWFNNIDKAEISMFKVGNLPLQNLDYLSLDMMEF
FT                   YAPTTGQLYDIRSDNLISSAHRTVNLGIGYTALADFFAYLASVPAQSFYHDRMVTSPIS
FT                   KQAYSVYERFIERFIDDFVGWGRCDLFNLDTLLHAKHIVGVPSSLIPWHCSLQRCPLPI
FT                   IMHYTGLHFGQEHITVRDVAGVEGLQQIVLRNDQGSIVLDALGTAAPSRLAVKLDWSKL
FT                   SAWYSDTTCAIPLSDRVMEIVNYAAIWDPTQERRAQVSCTHTLAPTSFRALTCLSLYST
FT                   RPSTLHHLTMTRAKL"
FT   CDS             2880. .5978
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JPV8"
FT                   /db_xref="InterPro:IPR007095"
FT                   /db_xref="UniProt/TrEMBL:Q8JPV8"
FT                   /note="ORF2"
FT                   /product="gag-pol fusion protein"
FT                   /protein_id="AAM77694.1"
FT                   /translation="MGSYAGKTRTGFVYTYFSPNFLSSFNVSEPIFHKAINLTPPYDDT
FT                   SQTVIQNLSMPQMLSFDPYYESTFYVVSADNEWIPTSGPAWKVPYLENVVKRSGRRLLA
FT                   ELRIASNNGSGDRTFLTTCKTRKGRHYAYFSAALGGKILEFVCAPLSSISLQGGQTIYA
FT                   PIQLQDAIPVRREDPVPGSIYAVFKFFSEPKAWEIRALKSYKVRFQDLPSHIVISELKE
FT                   RAARSYIGSRGYVDTGFKALDIYIDILSQMELPKYIHEFLVLLRGKVCEVSRLYKKEQV
FT                   FIILLTVFSELTAIVRHRGNKSTGSMGRMWTLLSDFETLLGKVSYKNPSIIEEQVVPWL
FT                   TSDPIPRTPDFYSTYFKMAVQFMHRTFVPVTLRSAPPLTFYEYCARSELWGTTGSGYIG
FT                   YGKRSFNKWSIYGAYPTEEIYRLALYGDNPPLKPLEKPELTKVRAVISASFQSYILMSY
FT                   LEYIMADTLVDKAFTTTLMNDRQLENLERHMMTMTGGVRVPVDQSNFDRQPDLVQIGIW
FT                   QQLLFHLASASAPYRARDSVSLVISRLASTTTFPNLKVRMSDGDKRVLHGLPSGWKWTA
FT                   LLGALINVTQLLTMAELSNTLASLRSTVVQGDDIALSMTDREQATQLVDTYARQGFEVN
FT                   PKKFWISPDRDEFLRRVATPGIVAGYPARMMIKLLYQLTEPEEPSHYISMLPKLAKVPN
FT                   MVREYVSPRSDVPWSETVEELDWREALAILRHRPARTSELVTQWLQLIGRFTAAHPDKR
FT                   ALTLLYHWFVRDLTHATKIKKRNLLVLLQQPGFWGGYSQSLVGLLRTTHLADMIVSELD
FT                   IGLPGPRATSNRFGTSPTSLAPHYLTLIVPSSVHVQSQKELDLWGLCRSSIYAKHYSNI
FT                   FRYYKLTLPTLVLWAQRLGDKHVTDFIRSVTLGSEIPKYDPHTRLFTSNGVSVGTLIRI
FT                   RVRHFTHRVLRRETPKCIPVIVGLYREQTLSVPESVRLSEPDKILSSLQRASGYSLSLV
FT                   KKILQITRKPVDHPVDARFSQAFPNNWSDLARTAGTFLLTVPA"
XX
SQ   Sequence 6273 BP; 1611 A; 1570 C; 1548 G; 1544 T; 0 other;

 AF525216  Length: 6273  March 29, 2005 13:35  Type: N  Check: 808  ..

       1  ggaaggagtg ccaggccatt accctccgcc cctgcctaac aaaactggct
      51  taccagaggc gggggggcgt ggtagacggt atgtctaggt ccagagaaag
     101  cggtcgctgt taagccgctg gacttcgcca cgcttacacc atcgagaaca
     151  cataagtggt gtaatattat gtgtttggct gcgtgtgtca cgagcacgac
     201  ccatggagga atctaaccca ggtggtgttg tgtatgataa ggtacaagcc
     251  cgtcaacacc acaggtggag agggacagga gtcccatttc ccctctagaa
     301  aacagcagtg gtccgcccct catgccctat gaaacgttag ggggccgaca
     351  ctagtgggca agcccgatgg tgtgggggac tggatatggg aacaccagtc
     401  cgttaaaccc gtacggcttc gccagcctac accggggggg gcttaatccc
     451  cttattttgg cacctgaaaa tattactttt gacactttga acacacagaa
     501  tgaccacgag gagacctacg gagagtctcc agaggttcct aaggcctcga
     551  tcgcgcctgc cgggaggcag aatgtcccgg ttctccaaca aaaacaagaa
     601  aacgaagata atcacgcgct gggcggcagc gaggacgcca aagacgagcg
     651  cgaaatacag ttttcagcta taaaaactct ctacaattat tactcagaag
     701  gtccttcgat cccaattatg ccacatttag tcaacaggtt acgaggatta
     751  gatgctctag ccaaggtaga cgcgacgctg agcaaggtgg atatgaacgc
     801  ggcctacata ttcgccctga gaccgacttt tccgtattcg tatgggtata
     851  aacaacgttt cagtaacagg agattgacca ctagtgcgct ttgctacgca
     901  aggacaggcc tatcctcatt tctgacagtc gacaaaacgt acacgtccaa
     951  ctctccatta aaagggggct ctagagggtg gcccattttt aacataggtg
    1001  tttcgccaca cgtggcggag cctcacatga ggacattgtc acctatcggt
    1051  cttgaagtat tcaatctggc tacttctcag ttttcgaaaa ctctattaac
    1101  tgcatcatcg aaagtcttca cgcagtcact ctacactgct gacatactat
    1151  cgatctttgg tgaggtgttc ctgccacacg tgatgcaacc ggtctcaaac
    1201  tacactccaa tacttgtgag ggcgctattg gccttgatcc acatactggg
    1251  gccaggatct ggtaattgct cactttcatc gtctatcttt gagagttcaa
    1301  ttccacaatt cttaacgata agccatagta caaacatgtc gaacagaacg
    1351  aggtactgct tacatacatg gtctgcttac aaggatatgt tcagaaacgg
    1401  tatcccacct cagtcgacgt ttccaccgac gctcgcgcca gaggggtcct
    1451  ctgctcggat tctaatccca gcggccctag tgaccagccc tatgtttcca
    1501  tggttacttg tattagtctc gagcggccca cagttcttct tgtattcaaa
    1551  ggacgctagt attaataccg tacacatcgg ttcgaggggg aggattacat
    1601  caccaatctc tgacgtcgcc caccttgatc tccacagact ctggaatctc
    1651  ttccgttttg atggttaccg ctatatcgac gtggtcatag tgggcgtagg
    1701  tagagattat gtgtggccct atcaaaatgg cgtgtatgta cacggcggta
    1751  agggacccaa aggtactgac aactacgaga atgctgacgt tcacgacgga
    1801  atagggacga tattttcgtc ctttaataac aatgttaacg tgcaaacgtc
    1851  cgacctcctg ctaggcttat cgaccctgtg gaatcacata gcgactacgt
    1901  acgctactga ggaggaggtt accatggcga ttaagattgc agcggctttt
    1951  gccctcgtct acccagtaca gcctattgtc tactctggct gttcgagcgc
    2001  ttttcataat cacacgtcat atttccagcc ctcatcggag aactgctaca
    2051  caaccgatac ggctgaagtg aagagcacgt gggatacggt cgagcttagt
    2101  gtacaggtta acgacgctat ggtactaggt atgacactac cgtttggcca
    2151  acctacagtt agcagtgcac gatggtttaa taacatcgat aaggccgaga
    2201  tctctatgtt taaggtcggt aatctaccgt tacagaacct cgattatcta
    2251  tctctcgaca tgatggaatt ctacgctcct acgacgggac aattgtacga
    2301  catacgtagt gataacctga tctcgagcgc ccataggacg gtgaacctcg
    2351  gaataggcta cacagccctg gcagatttct tcgcctatct agcttcagtt
    2401  cctgcccaga gtttttacca cgacaggatg gtcacctcac cgatttcaaa
    2451  gcaggcgtac tccgtctatg aacgttttat tgaacgtttt attgatgact
    2501  tcgtgggctg gggcagatgt gacctgttca accttgatac attgttacat
    2551  gcaaaacaca tagtcggggt accctcatct ctaatcccgt ggcactgctc
    2601  gctacagaga tgtccactac ccataatcat gcattacaca ggcctacatt
    2651  tcggccagga gcatataaca gtcagggacg tcgccggggt tgaaggctta
    2701  cagcagattg tgttgaggaa cgaccagggt agtatcgtac tagacgcctt
    2751  gggcactgct gcaccatcta gacttgcagt caaattagac tggtctaagc
    2801  ttagcgcctg gtactcagat acaacctgcg ccatcccttt atccgatcgt
    2851  gtgatggaga tcgtcaatta cgcagcaata tgggatccta cgcaggaaag
    2901  acgcgcacag gtttcgtgta cacatacttt agccccaact tcctttcgag
    2951  ctttaacgtg tctgagccta tattccacaa ggccatcaac cttacaccac
    3001  cttacgatga cacgagccaa actgtaattc aaaatttgtc catgccacag
    3051  atgctcagct tcgatcccta ctacgagtct acgttctatg tggtctccgc
    3101  ggataacgag tggataccga cttcagggcc tgcttggaag gtaccatacc
    3151  tggaaaacgt agttaagcgg tctggcaggc gcttgctggc ggagctcagg
    3201  atagcatcca ataacgggtc tggagaccgt accttcttga cgacgtgtaa
    3251  gacaagaaaa ggaaggcatt atgcctattt ctctgctgct ttggggggca
    3301  agatcctgga attcgtatgc gctccactgt cgagtatcag tctccagggc
    3351  gggcaaacga tctacgctcc gattcagctc caagacgcca taccagtacg
    3401  tagagaagat ccagtgccag ggagcatata cgcagtcttt aagtttttct
    3451  cagaaccaaa ggcttgggag atacgtgcac ttaagtccta caaagttagg
    3501  ttccaagatc tcccaagcca catagtgatt agtgagctaa aagagagagc
    3551  ggcgagaagt tatatcgggt cgaggggtta tgtcgataca ggttttaagg
    3601  ctttggacat ttatatagat attctttccc aaatggagct gccaaagtac
    3651  atacacgagt tcttagtttt actcagaggc aaggtgtgtg aagtttcgag
    3701  gttgtacaag aaggaacagg tattcataat actactaacc gtattctctg
    3751  agctcacagc catagttcgc catagaggta acaagtccac ggggtcgatg
    3801  gggaggatgt ggactttgtt atcagacttc gagaccctgc ttgggaaggt
    3851  gagctataag aacccgagta tcattgagga gcaggttgtt ccctggctaa
    3901  cctcagatcc tataccacgt acccctgatt tctactctac gtatttcaag
    3951  atggcggttc agtttatgca caggacattc gttcctgtca ctctcagaag
    4001  tgcccctccg ttaacatttt acgagtactg tgcgaggtcg gagctctggg
    4051  gaaccacggg atccggctac atcggctatg gcaagcgcag tttcaacaaa
    4101  tggtcgatct acggagctta tcctaccgag gagatttatc ggctagcact
    4151  ctatggagat aatccacccc tcaagccgct ggaaaaaccc gaacttacga
    4201  aggtacgtgc tgtaatctcc gcctctttcc aatcgtacat attgatgtcc
    4251  tacctcgagt acatcatggc agacacctta gttgacaaag cattcactac
    4301  aactctgatg aacgacaggc agttagagaa ccttgagcgc cacatgatga
    4351  ccatgaccgg aggagtcagg gttccagtgg accagtccaa ttttgatcgt
    4401  cagcctgact tggtccaaat aggcatctgg caacagttac tatttcacct
    4451  agcatctgcg tcagccccgt acagggcccg cgacagtgtc tcactagtca
    4501  tatcacgttt agcctcaact acgaccttcc cgaacctaaa ggtacggatg
    4551  tcggacggtg ataaacgtgt gctacacggc ctcccctcgg ggtggaagtg
    4601  gactgctctg ctgggggctc tcatcaatgt gacacaactt ctaaccatgg
    4651  cggaattgtc caacactctg gcctcgttga ggtcaacggt ggtacagggc
    4701  gacgatatcg ctctaagtat gactgaccgg gagcaggcca cacagttagt
    4751  tgacacttat gcacgtcaag ggttcgaggt caacccgaag aagttctgga
    4801  tatcacccga ccgggacgaa ttcctccgga gggtagcaac ccctggtata
    4851  gtcgcggggt acccagctag aatgatgatt aaattgttat atcagttgac
    4901  ggaacctgaa gagccctcac actacatctc catgttgcca aagctagcga
    4951  aggtgcctaa catggtccgg gagtatgtaa gcccccggtc tgatgtgcca
    5001  tggtcggaga ccgtcgaaga acttgattgg cgcgaagctc tcgctatact
    5051  gaggcatagg cctgcccgta catcagaact ggtgactcaa tggctgcaac
    5101  tgattggtag gtttacagct gctcatcctg ataagcgagc cttaactctt
    5151  ctttaccatt ggttcgtgag agacttgacg catgctacaa aaataaaaaa
    5201  aagaaatctt ctggtcctgt tacagcagcc gggcttctgg ggaggttatt
    5251  cccagagcct ggttggcttg ttaaggacca ctcacctcgc agatatgata
    5301  gttagcgaac tagacatagg actgccaggt cctcgggcca cgtctaatcg
    5351  ctttgggaca tcccctactt cactggcccc gcactacctc actctgatag
    5401  ttccgagtag cgtgcatgtg cagtcgcaaa aggaactgga tttgtggggg
    5451  ctgtgcagat ccagtatata tgctaagcac tattcaaaca tatttcgata
    5501  ctacaaactg actcttccta cgttggtgct ttgggcccaa cggctaggtg
    5551  ataaacacgt caccgatttc attagatctg tcaccctggg ttcagaaata
    5601  ccaaaatatg acccgcatac gcgtctattc acaagtaacg gggtgtcagt
    5651  aggaacgtta ataaggataa gagtacgaca ttttacccac agagtgcttc
    5701  gaagagagac acctaagtgt atccccgtaa tcgtcgggct atatcgggag
    5751  cagacactat ccgttccgga gagtgttcgt ctatcggaac ctgacaagat
    5801  actatcaagc ctacaacggg cgtcgggtta ctcactgagt ctagttaaga
    5851  agatattaca gatcactagg aaaccagtgg accatccggt ggacgcgagg
    5901  ttctcacagg cattccctaa caactggagc gacttggcta gaacggctgg
    5951  cacctttttg ttaactgtac cggcttagga ggtttcagga gacaatgcta
    6001  gccttgtcgc tgagcgtttg ggcttcaacc atagcagccg gcttcacgca
    6051  atttttaggt caaggaaatt tctcctttgc gtagtagcgt agctgctcaa
    6101  agaaaagaaa atactagtaa ttactgcaca cgatcggtgg gtcggccagc
    6151  atagggtggt gtgcggtccg agaacgggac tggccttagt accgtcataa
    6201  cacctggaca cgtgttgaaa ctgtcccccc tgtagactcc gttggctgta
    6251  ggaggcagcg tacgaggggg tcg