Sequence of DPV Giardia lamblia virus
Giardia lamblia virus, complete genome.
ACC No: AF525216
Dated: 2005-03-25 | Length: 6273 | CRC: -1723631827
!!NA_SEQUENCE 1.0 ID AF525216 standard; genomic RNA; VRL; 6273 BP. XX AC AF525216; XX SV AF525216.1 XX DT 12-AUG-2002 (Rel. 72, Created) DT 25-MAR-2005 (Rel. 83, Last updated, Version 2) XX DE Giardia lamblia virus, complete genome. XX KW . XX OS Giardia lamblia virus OC Viruses; dsRNA viruses; Totiviridae; Giardiavirus. XX RN [1] RP 1-6273 RX PUBMED; 15713450. RA Liu Q., Zhang X., Li J., Ying J., Chen L., Zhao Y., Wei F., Wu T.; RT "Giardia lamblia: stable expression of green fluorescent protein mediated RT by giardiavirus"; RL Exp. Parasitol. 109(3):181-187(2005). XX RN [2] RP 1-6273 RA Tian Z., Zhang X., Li J., Yin J., Yang J.; RT "Genomic sequence of giardiavirus in Giardia lamblia isolated from human in RT China"; RL Unpublished. XX RN [3] RP 1-6273 RA Tian Z., Zhang X., Li J., Yian J., Yang J.; RT ; RL Submitted (19-JUN-2002) to the EMBL/GenBank/DDBJ databases. RL Veterinary Preventive Medicine, Changchun University of Agriculture and RL Animal Sciences, 175, Xian Road, Changchun, Jilin 130062, China XX FH Key Location/Qualifiers FH FT source 1. .6273 FT /country="China" FT /db_xref="taxon:29255" FT /mol_type="genomic RNA" FT /virion FT /organism="Giardia lamblia virus" FT CDS 367. .3027 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q8JPV9" FT /note="ORF1" FT /product="capsid protein" FT /protein_id="AAM77693.1" FT /translation="MVWGTGYGNTSPLNPYGFASLHRGGLNPLILAPENITFDTLNTQN FT DHEETYGESPEVPKASIAPAGRQNVPVLQQKQENEDNHALGGSEDAKDEREIQFSAIKT FT LYNYYSEGPSIPIMPHLVNRLRGLDALAKVDATLSKVDMNAAYIFALRPTFPYSYGYKQ FT RFSNRRLTTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNIGVSPHVAEPHMR FT TLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYTP FT ILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTISHSTNMSNRTRYCLHTWSAYKD FT MFRNGIPPQSTFPPTLAPEGSSARILIPAALVTSPMFPWLLVLVSSGPQFFLYSKDASI FT NTVHIGSRGRITSPISDVAHLDLHRLWNLFRFDGYRYIDVVIVGVGRDYVWPYQNGVYV FT HGGKGPKGTDNYENADVHDGIGTIFSSFNNNVNVQTSDLLLGLSTLWNHIATTYATEEE FT VTMAIKIAAAFALVYPVQPIVYSGCSSAFHNHTSYFQPSSENCYTTDTAEVKSTWDTVE FT LSVQVNDAMVLGMTLPFGQPTVSSARWFNNIDKAEISMFKVGNLPLQNLDYLSLDMMEF FT YAPTTGQLYDIRSDNLISSAHRTVNLGIGYTALADFFAYLASVPAQSFYHDRMVTSPIS FT KQAYSVYERFIERFIDDFVGWGRCDLFNLDTLLHAKHIVGVPSSLIPWHCSLQRCPLPI FT IMHYTGLHFGQEHITVRDVAGVEGLQQIVLRNDQGSIVLDALGTAAPSRLAVKLDWSKL FT SAWYSDTTCAIPLSDRVMEIVNYAAIWDPTQERRAQVSCTHTLAPTSFRALTCLSLYST FT RPSTLHHLTMTRAKL" FT CDS 2880. .5978 FT /codon_start=1 FT /db_xref="GOA:Q8JPV8" FT /db_xref="InterPro:IPR007095" FT /db_xref="UniProt/TrEMBL:Q8JPV8" FT /note="ORF2" FT /product="gag-pol fusion protein" FT /protein_id="AAM77694.1" FT /translation="MGSYAGKTRTGFVYTYFSPNFLSSFNVSEPIFHKAINLTPPYDDT FT SQTVIQNLSMPQMLSFDPYYESTFYVVSADNEWIPTSGPAWKVPYLENVVKRSGRRLLA FT ELRIASNNGSGDRTFLTTCKTRKGRHYAYFSAALGGKILEFVCAPLSSISLQGGQTIYA FT PIQLQDAIPVRREDPVPGSIYAVFKFFSEPKAWEIRALKSYKVRFQDLPSHIVISELKE FT RAARSYIGSRGYVDTGFKALDIYIDILSQMELPKYIHEFLVLLRGKVCEVSRLYKKEQV FT FIILLTVFSELTAIVRHRGNKSTGSMGRMWTLLSDFETLLGKVSYKNPSIIEEQVVPWL FT TSDPIPRTPDFYSTYFKMAVQFMHRTFVPVTLRSAPPLTFYEYCARSELWGTTGSGYIG FT YGKRSFNKWSIYGAYPTEEIYRLALYGDNPPLKPLEKPELTKVRAVISASFQSYILMSY FT LEYIMADTLVDKAFTTTLMNDRQLENLERHMMTMTGGVRVPVDQSNFDRQPDLVQIGIW FT QQLLFHLASASAPYRARDSVSLVISRLASTTTFPNLKVRMSDGDKRVLHGLPSGWKWTA FT LLGALINVTQLLTMAELSNTLASLRSTVVQGDDIALSMTDREQATQLVDTYARQGFEVN FT PKKFWISPDRDEFLRRVATPGIVAGYPARMMIKLLYQLTEPEEPSHYISMLPKLAKVPN FT MVREYVSPRSDVPWSETVEELDWREALAILRHRPARTSELVTQWLQLIGRFTAAHPDKR FT ALTLLYHWFVRDLTHATKIKKRNLLVLLQQPGFWGGYSQSLVGLLRTTHLADMIVSELD FT IGLPGPRATSNRFGTSPTSLAPHYLTLIVPSSVHVQSQKELDLWGLCRSSIYAKHYSNI FT FRYYKLTLPTLVLWAQRLGDKHVTDFIRSVTLGSEIPKYDPHTRLFTSNGVSVGTLIRI FT RVRHFTHRVLRRETPKCIPVIVGLYREQTLSVPESVRLSEPDKILSSLQRASGYSLSLV FT KKILQITRKPVDHPVDARFSQAFPNNWSDLARTAGTFLLTVPA" XX SQ Sequence 6273 BP; 1611 A; 1570 C; 1548 G; 1544 T; 0 other; AF525216 Length: 6273 March 29, 2005 13:35 Type: N Check: 808 .. 1 ggaaggagtg ccaggccatt accctccgcc cctgcctaac aaaactggct 51 taccagaggc gggggggcgt ggtagacggt atgtctaggt ccagagaaag 101 cggtcgctgt taagccgctg gacttcgcca cgcttacacc atcgagaaca 151 cataagtggt gtaatattat gtgtttggct gcgtgtgtca cgagcacgac 201 ccatggagga atctaaccca ggtggtgttg tgtatgataa ggtacaagcc 251 cgtcaacacc acaggtggag agggacagga gtcccatttc ccctctagaa 301 aacagcagtg gtccgcccct catgccctat gaaacgttag ggggccgaca 351 ctagtgggca agcccgatgg tgtgggggac tggatatggg aacaccagtc 401 cgttaaaccc gtacggcttc gccagcctac accggggggg gcttaatccc 451 cttattttgg cacctgaaaa tattactttt gacactttga acacacagaa 501 tgaccacgag gagacctacg gagagtctcc agaggttcct aaggcctcga 551 tcgcgcctgc cgggaggcag aatgtcccgg ttctccaaca aaaacaagaa 601 aacgaagata atcacgcgct gggcggcagc gaggacgcca aagacgagcg 651 cgaaatacag ttttcagcta taaaaactct ctacaattat tactcagaag 701 gtccttcgat cccaattatg ccacatttag tcaacaggtt acgaggatta 751 gatgctctag ccaaggtaga cgcgacgctg agcaaggtgg atatgaacgc 801 ggcctacata ttcgccctga gaccgacttt tccgtattcg tatgggtata 851 aacaacgttt cagtaacagg agattgacca ctagtgcgct ttgctacgca 901 aggacaggcc tatcctcatt tctgacagtc gacaaaacgt acacgtccaa 951 ctctccatta aaagggggct ctagagggtg gcccattttt aacataggtg 1001 tttcgccaca cgtggcggag cctcacatga ggacattgtc acctatcggt 1051 cttgaagtat tcaatctggc tacttctcag ttttcgaaaa ctctattaac 1101 tgcatcatcg aaagtcttca cgcagtcact ctacactgct gacatactat 1151 cgatctttgg tgaggtgttc ctgccacacg tgatgcaacc ggtctcaaac 1201 tacactccaa tacttgtgag ggcgctattg gccttgatcc acatactggg 1251 gccaggatct ggtaattgct cactttcatc gtctatcttt gagagttcaa 1301 ttccacaatt cttaacgata agccatagta caaacatgtc gaacagaacg 1351 aggtactgct tacatacatg gtctgcttac aaggatatgt tcagaaacgg 1401 tatcccacct cagtcgacgt ttccaccgac gctcgcgcca gaggggtcct 1451 ctgctcggat tctaatccca gcggccctag tgaccagccc tatgtttcca 1501 tggttacttg tattagtctc gagcggccca cagttcttct tgtattcaaa 1551 ggacgctagt attaataccg tacacatcgg ttcgaggggg aggattacat 1601 caccaatctc tgacgtcgcc caccttgatc tccacagact ctggaatctc 1651 ttccgttttg atggttaccg ctatatcgac gtggtcatag tgggcgtagg 1701 tagagattat gtgtggccct atcaaaatgg cgtgtatgta cacggcggta 1751 agggacccaa aggtactgac aactacgaga atgctgacgt tcacgacgga 1801 atagggacga tattttcgtc ctttaataac aatgttaacg tgcaaacgtc 1851 cgacctcctg ctaggcttat cgaccctgtg gaatcacata gcgactacgt 1901 acgctactga ggaggaggtt accatggcga ttaagattgc agcggctttt 1951 gccctcgtct acccagtaca gcctattgtc tactctggct gttcgagcgc 2001 ttttcataat cacacgtcat atttccagcc ctcatcggag aactgctaca 2051 caaccgatac ggctgaagtg aagagcacgt gggatacggt cgagcttagt 2101 gtacaggtta acgacgctat ggtactaggt atgacactac cgtttggcca 2151 acctacagtt agcagtgcac gatggtttaa taacatcgat aaggccgaga 2201 tctctatgtt taaggtcggt aatctaccgt tacagaacct cgattatcta 2251 tctctcgaca tgatggaatt ctacgctcct acgacgggac aattgtacga 2301 catacgtagt gataacctga tctcgagcgc ccataggacg gtgaacctcg 2351 gaataggcta cacagccctg gcagatttct tcgcctatct agcttcagtt 2401 cctgcccaga gtttttacca cgacaggatg gtcacctcac cgatttcaaa 2451 gcaggcgtac tccgtctatg aacgttttat tgaacgtttt attgatgact 2501 tcgtgggctg gggcagatgt gacctgttca accttgatac attgttacat 2551 gcaaaacaca tagtcggggt accctcatct ctaatcccgt ggcactgctc 2601 gctacagaga tgtccactac ccataatcat gcattacaca ggcctacatt 2651 tcggccagga gcatataaca gtcagggacg tcgccggggt tgaaggctta 2701 cagcagattg tgttgaggaa cgaccagggt agtatcgtac tagacgcctt 2751 gggcactgct gcaccatcta gacttgcagt caaattagac tggtctaagc 2801 ttagcgcctg gtactcagat acaacctgcg ccatcccttt atccgatcgt 2851 gtgatggaga tcgtcaatta cgcagcaata tgggatccta cgcaggaaag 2901 acgcgcacag gtttcgtgta cacatacttt agccccaact tcctttcgag 2951 ctttaacgtg tctgagccta tattccacaa ggccatcaac cttacaccac 3001 cttacgatga cacgagccaa actgtaattc aaaatttgtc catgccacag 3051 atgctcagct tcgatcccta ctacgagtct acgttctatg tggtctccgc 3101 ggataacgag tggataccga cttcagggcc tgcttggaag gtaccatacc 3151 tggaaaacgt agttaagcgg tctggcaggc gcttgctggc ggagctcagg 3201 atagcatcca ataacgggtc tggagaccgt accttcttga cgacgtgtaa 3251 gacaagaaaa ggaaggcatt atgcctattt ctctgctgct ttggggggca 3301 agatcctgga attcgtatgc gctccactgt cgagtatcag tctccagggc 3351 gggcaaacga tctacgctcc gattcagctc caagacgcca taccagtacg 3401 tagagaagat ccagtgccag ggagcatata cgcagtcttt aagtttttct 3451 cagaaccaaa ggcttgggag atacgtgcac ttaagtccta caaagttagg 3501 ttccaagatc tcccaagcca catagtgatt agtgagctaa aagagagagc 3551 ggcgagaagt tatatcgggt cgaggggtta tgtcgataca ggttttaagg 3601 ctttggacat ttatatagat attctttccc aaatggagct gccaaagtac 3651 atacacgagt tcttagtttt actcagaggc aaggtgtgtg aagtttcgag 3701 gttgtacaag aaggaacagg tattcataat actactaacc gtattctctg 3751 agctcacagc catagttcgc catagaggta acaagtccac ggggtcgatg 3801 gggaggatgt ggactttgtt atcagacttc gagaccctgc ttgggaaggt 3851 gagctataag aacccgagta tcattgagga gcaggttgtt ccctggctaa 3901 cctcagatcc tataccacgt acccctgatt tctactctac gtatttcaag 3951 atggcggttc agtttatgca caggacattc gttcctgtca ctctcagaag 4001 tgcccctccg ttaacatttt acgagtactg tgcgaggtcg gagctctggg 4051 gaaccacggg atccggctac atcggctatg gcaagcgcag tttcaacaaa 4101 tggtcgatct acggagctta tcctaccgag gagatttatc ggctagcact 4151 ctatggagat aatccacccc tcaagccgct ggaaaaaccc gaacttacga 4201 aggtacgtgc tgtaatctcc gcctctttcc aatcgtacat attgatgtcc 4251 tacctcgagt acatcatggc agacacctta gttgacaaag cattcactac 4301 aactctgatg aacgacaggc agttagagaa ccttgagcgc cacatgatga 4351 ccatgaccgg aggagtcagg gttccagtgg accagtccaa ttttgatcgt 4401 cagcctgact tggtccaaat aggcatctgg caacagttac tatttcacct 4451 agcatctgcg tcagccccgt acagggcccg cgacagtgtc tcactagtca 4501 tatcacgttt agcctcaact acgaccttcc cgaacctaaa ggtacggatg 4551 tcggacggtg ataaacgtgt gctacacggc ctcccctcgg ggtggaagtg 4601 gactgctctg ctgggggctc tcatcaatgt gacacaactt ctaaccatgg 4651 cggaattgtc caacactctg gcctcgttga ggtcaacggt ggtacagggc 4701 gacgatatcg ctctaagtat gactgaccgg gagcaggcca cacagttagt 4751 tgacacttat gcacgtcaag ggttcgaggt caacccgaag aagttctgga 4801 tatcacccga ccgggacgaa ttcctccgga gggtagcaac ccctggtata 4851 gtcgcggggt acccagctag aatgatgatt aaattgttat atcagttgac 4901 ggaacctgaa gagccctcac actacatctc catgttgcca aagctagcga 4951 aggtgcctaa catggtccgg gagtatgtaa gcccccggtc tgatgtgcca 5001 tggtcggaga ccgtcgaaga acttgattgg cgcgaagctc tcgctatact 5051 gaggcatagg cctgcccgta catcagaact ggtgactcaa tggctgcaac 5101 tgattggtag gtttacagct gctcatcctg ataagcgagc cttaactctt 5151 ctttaccatt ggttcgtgag agacttgacg catgctacaa aaataaaaaa 5201 aagaaatctt ctggtcctgt tacagcagcc gggcttctgg ggaggttatt 5251 cccagagcct ggttggcttg ttaaggacca ctcacctcgc agatatgata 5301 gttagcgaac tagacatagg actgccaggt cctcgggcca cgtctaatcg 5351 ctttgggaca tcccctactt cactggcccc gcactacctc actctgatag 5401 ttccgagtag cgtgcatgtg cagtcgcaaa aggaactgga tttgtggggg 5451 ctgtgcagat ccagtatata tgctaagcac tattcaaaca tatttcgata 5501 ctacaaactg actcttccta cgttggtgct ttgggcccaa cggctaggtg 5551 ataaacacgt caccgatttc attagatctg tcaccctggg ttcagaaata 5601 ccaaaatatg acccgcatac gcgtctattc acaagtaacg gggtgtcagt 5651 aggaacgtta ataaggataa gagtacgaca ttttacccac agagtgcttc 5701 gaagagagac acctaagtgt atccccgtaa tcgtcgggct atatcgggag 5751 cagacactat ccgttccgga gagtgttcgt ctatcggaac ctgacaagat 5801 actatcaagc ctacaacggg cgtcgggtta ctcactgagt ctagttaaga 5851 agatattaca gatcactagg aaaccagtgg accatccggt ggacgcgagg 5901 ttctcacagg cattccctaa caactggagc gacttggcta gaacggctgg 5951 cacctttttg ttaactgtac cggcttagga ggtttcagga gacaatgcta 6001 gccttgtcgc tgagcgtttg ggcttcaacc atagcagccg gcttcacgca 6051 atttttaggt caaggaaatt tctcctttgc gtagtagcgt agctgctcaa 6101 agaaaagaaa atactagtaa ttactgcaca cgatcggtgg gtcggccagc 6151 atagggtggt gtgcggtccg agaacgggac tggccttagt accgtcataa 6201 cacctggaca cgtgttgaaa ctgtcccccc tgtagactcc gttggctgta 6251 ggaggcagcg tacgaggggg tcg