Sequence of DPV Gremmeniella mitovirus S1

Gremmeniella abietina mitochondrial RNA virus S1 putative RNA-dependent RNA polymerase gene, complete cds.

ACC No: AF534641

Dated: 2008-12-16 | Length: 2572 | CRC: -248159392

                
ID   AF534641; SV 1; linear; genomic RNA; STD; VRL; 2572 BP.
XX
AC   AF534641;
XX
DT   10-SEP-2002 (Rel. 73, Created)
DT   16-DEC-2008 (Rel. 98, Last updated, Version 3)
XX
DE   Gremmeniella abietina mitochondrial RNA virus S1 putative RNA-dependent RNA
DE   polymerase gene, complete cds.
XX
KW   .
XX
OS   Gremmeniella mitovirus S1
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus; unclassified Mitovirus.
XX
RN   [1]
RP   1-2572
RX   DOI; 10.1007/s00705-003-0195-5.
RX   PUBMED; 14648296.
RA   Tuomivirta T.T., Hantula J.;
RT   "Gremmeniella abietina mitochondrial RNA virus S1 is phylogenetically
RT   related to the members of the genus Mitovirus";
RL   Arch. Virol. 148(12):2429-2436(2003).
XX
RN   [2]
RP   1-2572
RA   Tuomivirta T.T., Hantula J.;
RT   ;
RL   Submitted (05-AUG-2002) to the EMBL/GenBank/DDBJ databases.
RL   Vantaa Research Centre, Finnish Forest Research Institute, Jokiniemenkuja 1
RL   P.O. Box 18, Vantaa 01301, Finland
XX
CC   Name: Gremmeniella abietina mitochondrial RNA virus S1 putative
CC   replicase gene,              complete cds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2572
FT                   /organism="Gremmeniella mitovirus S1"
FT                   /host="Gremmeniella abietina type A"
FT                   /isolate="Luu7"
FT                   /serotype="type A, LTT"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:204819"
FT   CDS             254. .2479
FT                   /codon_start=1
FT                   /transl_table=4
FT                   /product="putative RNA-dependent RNA polymerase"
FT                   /protein_id="AAN05635.1"
FT                   /translation="MNKNLFQIVIKLFVMIFLNTDVKLFVSLYFKCLTKHLKHHGIVST
FT                   VKIFKQIRLHVTRYLCGSPLRINSMMIGIDKDGWPKMINFLKPLANGTRSDKQLLLSIL
FT                   FITRSFVEKDKSKLVPDWSTITQPRTTQKEYIIPSGFIKDWVLNNHLGTYKSEFDDSNH
FT                   FVSVKSSPTGPSTLTALWGLWNHSYESFNWLFKITSLSGVDYLTKIMNWTWLKDLGNKK
FT                   NNKWSKQFLGSLSLIYDPECKVRIVAMLDYTTQLFLRPIHNDLFKLLKKLPQDRTFTQN
FT                   PLNDWEDNEHSFWSIDLTAATDRFPISLQRRLLLYIYSDPEIANSWQNLLVHREYARNG
FT                   LNPIKYSVGQPMGAYSSWPAFTLSHHLVVHWCAHLCNINKFKDYIILGDDIVIHNDNIA
FT                   KKYIEIMGKLGVGLSNSKTHVSKDTYEFAKRWIHKGQEISPLPITGIVNNITNPYIVLM
FT                   NLYDFFKIKRNQYNFSGDILTMLLKLYQGLKIYKGDKSKKHYYLSLNRFKNLDIFLFAL
FT                   NNTFGYSTYDHKRSFLISKDYSKDLPGPKIMQDLISYVISTGLSNLTVESVNKSLKFVD
FT                   TIIDNKNLLNIEDPNDLSNLPLFKGFQAYISNLRKTVEGWNNKSISLIEASRGLVQMDI
FT                   LPIMKGSNRKILELQTIGKIYQNGIQEINNSEFEIFGSSQMIHPNESLGIQEGSSLNSF
FT                   SSLSSSIDTNLVFIQNELNVIAKKNWMPPATEDSVADSYAAFAAMFN"
XX
SQ   Sequence 2572 BP; 940 A; 393 C; 395 G; 844 T; 0 other;

af534641 Length: 2572  16-DEC-2008  Type: N  Check: 7617  ..

       1  ggtgtttaca ccttaaataa gtgtaaacag ggctaatcac ccggccaagt
      51  attattttct tggtcccagt tagcaatact atgagagtat tctagatttc
     101  ttcgagtgtc ccttttggtt aatttctgaa ggctggaaac tccaaccgtt
     151  ggaaataccc tgcaaaagag ctaggttata gcatcgtaga taactataat
     201  tgctcttggg ccgcaagtcg gctatgcggt acaaccgtta agacttaatt
     251  attatgaaca aaaatttatt tcaaatagta attaaactat tcgtaatgat
     301  atttttgaac actgatgtta agctcttcgt atctctttat tttaaatgtt
     351  taacaaaaca tttaaaacac cacggaatag tgagtactgt aaaaatattt
     401  aaacaaataa gattacatgt gactcgctat ctttgtggat caccattgag
     451  aataaactca atgatgatag ggatagataa agatggttga ccaaaaatga
     501  tcaatttcct aaaacctctt gccaatggta cgagatctga taaacaatta
     551  cttttatcaa tcttgttcat tacgagaagt tttgtggaaa aagacaagag
     601  taaactagtt cctgattgaa gtacaataac acaaccccga acaactcaaa
     651  aggaatatat tatcccttct ggatttatta aggattgagt attgaacaat
     701  catttaggta cttataaaag tgaatttgat gattctaatc attttgtttc
     751  agtgaagagt agtcctactg gaccatcaac actgacagca ttatgaggac
     801  tatgaaatca tagttacgaa tcatttaatt gactttttaa gattactagt
     851  ttatctggtg ttgattatct tacaaaaatc atgaattgga cttgattaaa
     901  agacctagga aataaaaaga ataataaatg atccaaacaa tttttaggat
     951  ctttatcatt aatttatgac ccagaatgta aagttaggat agtagctatg
    1001  ttagattata caacacagct atttctccga cctatacata atgacttgtt
    1051  taaacttctt aagaagttac cacaagatag gacttttact caaaatcctt
    1101  taaatgattg agaagataat gaacactcat tttgatcaat cgaccttacg
    1151  gctgcaactg atagatttcc aataagttta cagcgtcggt tattactata
    1201  tatctatagt gatcccgaaa ttgcaaattc ttgacaaaat ctattagtac
    1251  atagagaata tgctcgtaat gggctgaatc caataaaata ttctgttgga
    1301  cagcccatgg gagcatattc atcctgacct gctttcacat tatctcatca
    1351  tcttgtagtt cattgatgtg cacatttgtg taacattaat aaatttaaag
    1401  attatataat tcttggtgat gatatcgtta tacataatga taacattgca
    1451  aagaagtata ttgagataat gggaaagtta ggagtgggtc tatctaatag
    1501  taaaactcat gtatctaaag atacttatga atttgctaaa agatgaatcc
    1551  ataaaggaca agaaatatcg ccattaccta ttacaggaat tgttaataat
    1601  ataacaaatc cctatatagt gttaatgaat ttatacgatt tctttaaaat
    1651  caaaagaaac cagtataact tctcaggtga tatactaact atgttattaa
    1701  aattatacca aggtttaaaa atttacaaag gagataaaag taaaaaacat
    1751  tattacttat ctcttaatag atttaaaaat cttgatatat ttttatttgc
    1801  gctgaataat accttcggat actcaacata tgatcataaa agatcatttt
    1851  tgatttccaa agattacagt aaggatttac caggaccaaa aataatgcaa
    1901  gatttaatat cttacgtaat tagtactggt ttatctaatc ttactgtgga
    1951  aagtgtaaat aaatcactta agttcgttga tactataata gataataaaa
    2001  atctattaaa tatcgaagat cctaatgatt tatctaacct tccattattc
    2051  aaaggttttc aagcttatat ctctaatctt cgaaaaactg tcgaggggtg
    2101  aaataataaa tcaatttcac ttatcgaagc ttctagagga ttagtccaga
    2151  tggatatact tccaattatg aaaggttcta ataggaaaat tttagaactt
    2201  caaacaattg gaaaaatata ccaaaatgga atacaagaaa taaataatag
    2251  tgaatttgaa atttttggtt cctcccaaat gatacaccca aacgaaagtt
    2301  taggtattca agaaggaagt tccttaaatt cattttcatc attatcatct
    2351  agtatagata ctaacttggt ttttatccag aatgagttaa atgttatagc
    2401  taagaagaac tgaatgcctc ctgcaactga agattcagtt gcggattcat
    2451  atgcagcctt cgcagctatg ttcaattaat atcattaccg aatacagttg
    2501  caaatctaga tactcaaaaa ctatattgag tctagactcc aactggggtt
    2551  ttacacatat gtgtaaaaca cc