Sequence of DPV Rice black streaked dwarf virus

Rice black streaked dwarf virus segment 9, complete sequence.

ACC No: AF540976

Dated: 2003-05-29 | Length: 1900 | CRC: 2020322381

                !!NA_SEQUENCE 1.0
ID   AF540976   standard; genomic RNA; VRL; 1900 BP.
XX
AC   AF540976;
XX
SV   AF540976.1
XX
DT   29-SEP-2002 (Rel. 73, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus segment 9, complete sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Fijivirus; Fijivirus group 2.
XX
RN   [1]
RP   1-1900
RA   Li C., Zhong Y.;
RT   "Cloning and Expression of s9-1 gene of Rice Black-Streaked Dwarf Virus in
RT   Escherichia coli";
RL   Unpublished.
XX
RN   [2]
RP   1-1900
RA   Li C., Zhong Y.;
RT   ;
RL   Submitted (27-AUG-2002) to the EMBL/GenBank/DDBJ databases.
RL   College of Life Science, Peking University, 5# Road Yuanmingyuan, Beijing
RL   100871, P. R. China
XX
DR   SPTREMBL; Q8BC68; Q8BC68.
DR   SPTREMBL; Q8BC69; Q8BC69.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1900
FT                   /country="China:Zhengzhou"
FT                   /db_xref="taxon:10990"
FT                   /mol_type="genomic RNA"
FT                   /organism="Rice black streaked dwarf virus"
FT                   /isolate="Henan Zhengzhou"
FT                   /specific_host="maize and rice"
FT                   /segment="9"
FT   CDS             52. .1095
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q8BC69"
FT                   /note="RBSDV S9-1; ORF1"
FT                   /product="unknown"
FT                   /protein_id="AAN28667.1"
FT                   /translation="MADQERRTFGSYKIEELTIKNDQPNRNTNSSTSQSTENRLSTKKI
FT                   PLLDDGIFELLNYLIDGTNFDKTCYCGFNYSHLPNLERDFNVASIYVRENFELCTENLD
FT                   LKDYGRQANISVKSPDFTLLLEYTLKPSSEADPTIPENEKEENTKPVTPKVVSPKEEKK
FT                   TVEMSLLPILNRESEESLSSEILEGEAAVVNVFKMYIKGFLMYLGENPNSYDRQLNIEK
FT                   YRPLLISIIGYEHLIGTRVPNKEVNHIFYQLATFDNYPFDLLRFQLSSLISTPALIREK
FT                   IAKEGLFKIITSNTLRGASRQTVLFRGINGSESFLNIKRYRKFRTRIVGNVDCVIKSDF
FT                   SSLKLDV"
FT   CDS             1160. .1789
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q8BC68"
FT                   /note="ORF2"
FT                   /product="unknown"
FT                   /protein_id="AAN28668.1"
FT                   /translation="MNPQSSVNVDTYTFNCPFELAKIQIESMKPIMQDFSNFDDIFNRT
FT                   LSDSEIDDRVEQLEVDVESKVDPIVRRRYGKIGHIIIMIISFVFFGIFKLTLKMFYHLF
FT                   RCVCCNPLIRGILSIIFTILFYFLLCLCIYFVYYFFGDQISSAYNTLNQIDSSNFINST
FT                   QVEEKVKNIIHDGSLFFGTRDQATGQINEIETQVVNGGTVNYTLFN"
XX
SQ   Sequence 1900 BP; 607 A; 325 C; 313 G; 655 T; 0 other;

AF540976  Length: 1900  September 11, 2003 13:47  Type: N  Check: 9142  ..

       1  aagtttttta gcctggaact gacacattcc tacaggaacg agcgtaagag
      51  aatggcagac caagagcgga gaacgtttgg atcatataaa atagaagaat
     101  tgacaattaa aaacgaccaa ccaaatagaa acacaaattc atcaacttct
     151  cagtctactg aaaatcgtct ttcaaccaag aaaatccccc tactcgatga
     201  cggcatcttc gaacttctga actaccttat tgatggaacc aacttcgaca
     251  aaacttgcta ttgtggtttt aattattctc atctccctaa ccttgaacgt
     301  gactttaacg ttgcatctat ttatgtccgc gagaattttg agttatgcac
     351  tgaaaactta gatttgaaag attatggtag acaggcaaat ataagcgtga
     401  aatctcctga ttttactttg cttctagaat atactcttaa accatcatca
     451  gaagccgatc ctactattcc agagaatgag aaagaagaga atactaaacc
     501  agttactcct aaagttgtct ctccaaaaga agagaagaaa acagttgaaa
     551  tgtcgttgtt gccaattctg aaccgtgaat ctgaagaatc tttaagctct
     601  gaaattcttg aaggtgaagc tgctgttgtt aatgtattca aaatgtatat
     651  aaaaggcttt ttaatgtatt tgggtgaaaa tccaaactct tatgaccgtc
     701  aattaaacat agaaaagtat cgtcctttgc taatttcaat catcggatat
     751  gaacatctca tcggaacaag agttccaaat aaagaagtta atcacatttt
     801  ttaccagttg gcgacttttg ataactaccc ttttgaccta ctgagattcc
     851  agctttcttc actcatctct acacccgctt taatccgaga aaaaattgct
     901  aaagaaggat tgttcaagat tattacgtca aacaccctgc gtggtgcttc
     951  ccgtcaaact gtcttattta gaggaattaa tggaagtgaa tcgtttttga
    1001  acatcaagag atatcgtaaa ttcaggacac gaattgttgg caatgttgat
    1051  tgcgttatta aatctgattt ttcttccttg aaattggacg tttgatcttt
    1101  tactttttat gttctgaaaa ttgaatatca ctggttaatg aatcatttcc
    1151  tttaatttta tgaatcccca atcttcagta aatgttgata cttatacttt
    1201  taactgtccc tttgaactag caaaaattca aattgaatcg atgaaaccta
    1251  ttatgcaaga ttttagcaat tttgatgata tctttaatcg tacattatct
    1301  gattctgaaa ttgatgatcg tgtagaacag cttgaagttg acgtcgaatc
    1351  aaaagtcgat ccaattgtga gaagaagata tggtaaaatt ggacatatca
    1401  tcattatgat tatcagtttt gtattttttg gtatttttaa gcttactctt
    1451  aagatgtttt atcatttgtt tcgttgtgtg tgttgtaatc ctttgattag
    1501  aggcatactt agtatcattt ttaccatatt attttacttt ctactgtgtt
    1551  tgtgcattta ttttgtttat tacttttttg gagatcaaat ttcgtcagcg
    1601  tacaatactt tgaatcaaat tgatagttct aattttataa attctactca
    1651  agttgaagaa aaagttaaaa atataattca cgacggttca ctctttttcg
    1701  gtactcgtga tcaagcaaca ggtcaaatta acgaaattga aactcaagtt
    1751  gtaaatggtg gtactgtaaa ctatacgctt tttaattaac gtctatttta
    1801  tatgactctg aaaatattca cgctcgcaag tcgattttct tacagttatg
    1851  tcttttgagg tatgacaaac tcgttctcaa gccggctaac agctgatgtc