Sequence of DPV Ophiostoma mitovirus 3a
Ophiostoma mitovirus 3a gene encoding RNA-dependent RNA polymerase, genomic RNA
ACC No: AJ004930
Dated: 2006-11-14 | Length: 2617 | CRC: 957792720
ID AJ004930; SV 1; linear; genomic RNA; STD; VRL; 2617 BP.
XX
AC AJ004930;
XX
DT 24-SEP-1998 (Rel. 57, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 5)
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DE Ophiostoma mitovirus 3a gene encoding RNA-dependent RNA polymerase, genomic
DE RNA
XX
KW RNA-dependent RNA polymerase.
XX
OS Ophiostoma mitovirus 3a
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus.
XX
RN [1]
RP 1-2617
RA Buck K.W.;
RT ;
RL Submitted (24-MAR-1998) to the EMBL/GenBank/DDBJ databases.
RL Buck K.W., Biology, Imperial College of Science, Technology and Medicine,
RL Prince Consort Road, London, SW7 2BB, U.K. .
XX
RN [2]
RX DOI; 10.1006/viro.1998.9178.
RX PUBMED; 9657003.
RA Hong Y., Cole T.E., Brasier C.M., Buck K.W.;
RT "Evolutionary relationships among putative RNA-dependent RNA polymerases
RT encoded by a mitochondrial virus-like RNA in the Dutch elm disease fungus,
RT Ophiostoma novo-ulmi, by other viruses and virus-like RNAs, and by the
RT Arabidopsis mitochondrial genome";
RL Virology 246(1):158-169(1998).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2617
FT /organism="Ophiostoma mitovirus 3a"
FT /specific_host="Ophiostoma novo-ulmi"
FT /mol_type="genomic RNA"
FT /virion
FT /db_xref="taxon:198597"
FT CDS 269. .2425
FT /transl_table=4
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:O92614"
FT /db_xref="InterPro:IPR000408"
FT /db_xref="InterPro:IPR008686"
FT /db_xref="UniProtKB/TrEMBL:O92614"
FT /protein_id="CAA06228.1"
FT /translation="MKRLTLSQNKSNQLTNNDLSNVGYITKQLFPHWIRLLVWSLQLSP
FT APYKKFGSRIAILWKANGVSFTVQYLKECTRIVQHFVSGHPVFVTDVMPIGLAGGLPTI
FT IPGTLRTLLRSKDSSTIRGVLSTLAVYRIMKMPCVLKLESITDPFKGISDTLPKSEIIN
FT GLASLGFEIPKGRSKHLLTLSNPIIYLLSAGPNHSISMMGIWKDIYAWYVSPLFPTLLS
FT FIGRMNRGNVLIDLLRAEVSYWEATGVKPSVSPLDLKLGKLAIKEEAAGKARVFAMADS
FT ITQSVMAPLNSWVFSKLKDLPMDGTFNQQAPLNRLVQLYQDGLLHDVEFYSYDLSSATD
FT RLPMAFQKQIISVLFGSKFAKDWATLLVGRDWYLKDIPYRYSVGQPMGALSSWAMLALS
FT HHVIVQIAAMRVGKLPFTNYALLGDDIVIADKAVATSYHMIMTQILGVEINLSKSLVSN
FT NSFEFAKRLVTMDGEVSAVGAKNLLVALKSRWGISSVILDLYNKGLALSEQDLRQRFSS
FT IPTVSKQFGVDKLLWLVLGPFGFIPSKDGLSAFMKLNRSLSLVDMHILLSCVDEAKFDL
FT DKKTWEANIQETVHTLLRFGMLSEPAGFEVFSDFTSSPLYSFIRGQFGNKLSALVQDKP
FT VRRLIFDGPLLHFNFYTEGWCDGLMEHLTKKIQSDSQETVSPSNPFKDDKVILPLRGNI
FT KGIFFKHVLALMAERDPATVMRWM"
FT variation 246
FT /replace="c"
FT /note="polymorphism"
FT variation 332
FT /replace="a"
FT /note="polymorphism"
FT variation 349
FT /replace="c"
FT /note="polymorphism"
FT variation 640
FT /replace="t"
FT /note="polymorphism"
FT variation 724
FT /replace="g"
FT /note="polymorphism"
FT variation 1654
FT /replace="a"
FT /note="polymorphism"
FT variation 1738
FT /replace="g"
FT /note="polymorphism"
FT variation 1970
FT /replace="c"
FT /note="polymorphism"
FT variation 1997
FT /replace="c"
FT /note="polymorphism"
FT variation 2005
FT /replace="g"
FT /note="polymorphism"
FT variation 2256
FT /replace="c"
FT /note="polymorphism"
FT variation 2345
FT /replace="t"
FT /note="polymorphism"
XX
SQ Sequence 2617 BP; 789 A; 486 C; 512 G; 830 T; 0 other;
aj004930 Length: 2617 14-NOV-2006 Type: N Check: 2700 ..
1 agtatagctt aagctatact caaggactac gtcctccctc agagaattaa
51 cacccctctg agatggatgg aaacttgttt atactttcgc tatagcttta
101 cgcgtatagg gcagtacctt ccccgccgtg cgatcaatta acgtaattgt
151 taatgaactc acaaataaag aatgtttacc agttctttat ggcgattccc
201 tgtaagatac cttactttag tagtaagtgt gtcttccatc ggttaaatca
251 tataaatata ataaaaccat gaaaagacta acactttcac aaaacaagag
301 taatcaactt acgaataatg atttatctaa tgttggatat ataactaaac
351 agttatttcc tcattgaata agattattag tatgaagctt acaattgtct
401 cctgctccgt acaagaagtt cggatcgaga atagcaattc tttgaaaggc
451 taacggtgtt tctttcaccg ttcagtactt aaaagaatgt actagaatcg
501 tccaacattt tgtgtcgggc catccggtat tcgtcactga cgtaatgccg
551 attggtctag ctggaggact ccctactata ataccgggaa ccttaagaac
601 tcttttgaga tctaaggatt ctagtactat aaggggagtc ttgtctacct
651 tggcagtata tagaataatg aaaatgcctt gtgtacttaa gttagagtca
701 atcacagatc cttttaaagg gatttctgat actcttccta agtccgagat
751 cattaacgga ttagcgtcat tgggttttga aattcctaag ggaagatcaa
801 agcacctgtt gaccttatct aatccgatta tttatctatt atctgccggg
851 ccgaatcact ctatatcaat gatgggtatc tgaaaagata tctatgcatg
901 atatgtaagt ccgttattcc ctactcttct ttcttttata ggaaggatga
951 atagaggtaa cgttcttatt gatttgttaa gagccgaagt ttcttactga
1001 gaggcaacag gggttaaacc ctctgtcagt cccttagatc tgaaactagg
1051 aaaactagca atcaaagagg aagcagccgg aaaggctaga gtcttcgcca
1101 tggcggattc cattacacag agtgtaatgg ccccgctgaa tagttgagtc
1151 tttagtaaat taaaggacct tccaatggat ggtacattta atcaacaagc
1201 tccactaaac agattagttc aactttatca agatggactt ctccatgacg
1251 tagaattcta ttcttacgat ctgagttctg ctaccgatag attacctatg
1301 gcctttcaga agcaaattat atccgtatta ttcggatcta aatttgctaa
1351 ggattgggct actcttcttg ttggaagaga ctggtatctt aaggatatac
1401 cttatagata ctcagttggg caacctatgg gagccttatc atcatgagca
1451 atgcttgcat tgtctcatca tgtaattgta caaatagctg caatgagagt
1501 tggtaaactc ccattcacta attatgcgtt acttggtgat gatatcgtaa
1551 tagctgataa agctgttgcg acatcttatc acatgataat gactcagatc
1601 cttggggttg aaatcaactt atccaaatca cttgtctcta acaactcttt
1651 cgagtttgct aagagattgg tgactatgga tggggaagtt tcagctgtgg
1701 gagctaagaa tttattagta gctctaaaat ctagatgagg aatctcgtct
1751 gtgattttag atctatataa taaaggatta gcactttccg aacaagatct
1801 aaggcaaaga ttttcatcta ttcctactgt ttcaaaacag tttggagttg
1851 ataaacttct ttgactagtt cttggtccgt ttggttttat cccatctaaa
1901 gatggtctat cagcttttat gaagttgaat agatcgctct ctttagtaga
1951 tatgcatatt ttgctatctt gtgttgacga agctaagttt gacttagata
2001 agaaaacatg agaagctaat atacaggaaa cagtccatac cttattaagg
2051 tttggaatgt tatctgaacc agctggcttt gaagtctttt cggacttcac
2101 ttcttcaccg ttatactctt tcataagagg gcagtttgga aacaaacttt
2151 ccgctcttgt gcaagataaa ccggtgagaa ggctaatctt tgacgggcca
2201 ctattgcact ttaacttcta tactgaaggt tggtgcgatg gtttaatgga
2251 acacttgact aagaaaatcc aatcggattc tcaagagaca gtatctccat
2301 ctaacccgtt caaggatgat aaggtcatct taccgttaag ggggaacatt
2351 aaaggaattt tctttaaaca tgttctcgcc ttaatggcag aaagggatcc
2401 agctacagta atgagatgaa tgtaagaaca ttcatatcct tcaccgtagg
2451 ggcggactag aatccaatac acataggaat cctatatgtg gggaaactac
2501 gcttagagac tactttgtct ttcaaatatg actactccct ctcatccatt
2551 ggtctgttaa accaatgtgg tgatgatagg taagatgcaa atttaaaggc
2601 ttatgtatat ctctaag