Sequence of DPV Ophiostoma mitovirus 3a
Ophiostoma mitovirus 3a gene encoding RNA-dependent RNA polymerase, genomic RNA
ACC No: AJ004930
Dated: 2006-11-14 | Length: 2617 | CRC: 957792720
ID AJ004930; SV 1; linear; genomic RNA; STD; VRL; 2617 BP. XX AC AJ004930; XX DT 24-SEP-1998 (Rel. 57, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Ophiostoma mitovirus 3a gene encoding RNA-dependent RNA polymerase, genomic DE RNA XX KW RNA-dependent RNA polymerase. XX OS Ophiostoma mitovirus 3a OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae; OC Mitovirus. XX RN [1] RP 1-2617 RA Buck K.W.; RT ; RL Submitted (24-MAR-1998) to the EMBL/GenBank/DDBJ databases. RL Buck K.W., Biology, Imperial College of Science, Technology and Medicine, RL Prince Consort Road, London, SW7 2BB, U.K. . XX RN [2] RX DOI; 10.1006/viro.1998.9178. RX PUBMED; 9657003. RA Hong Y., Cole T.E., Brasier C.M., Buck K.W.; RT "Evolutionary relationships among putative RNA-dependent RNA polymerases RT encoded by a mitochondrial virus-like RNA in the Dutch elm disease fungus, RT Ophiostoma novo-ulmi, by other viruses and virus-like RNAs, and by the RT Arabidopsis mitochondrial genome"; RL Virology 246(1):158-169(1998). XX FH Key Location/Qualifiers FH FT source 1. .2617 FT /organism="Ophiostoma mitovirus 3a" FT /specific_host="Ophiostoma novo-ulmi" FT /mol_type="genomic RNA" FT /virion FT /db_xref="taxon:198597" FT CDS 269. .2425 FT /transl_table=4 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:O92614" FT /db_xref="InterPro:IPR000408" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:O92614" FT /protein_id="CAA06228.1" FT /translation="MKRLTLSQNKSNQLTNNDLSNVGYITKQLFPHWIRLLVWSLQLSP FT APYKKFGSRIAILWKANGVSFTVQYLKECTRIVQHFVSGHPVFVTDVMPIGLAGGLPTI FT IPGTLRTLLRSKDSSTIRGVLSTLAVYRIMKMPCVLKLESITDPFKGISDTLPKSEIIN FT GLASLGFEIPKGRSKHLLTLSNPIIYLLSAGPNHSISMMGIWKDIYAWYVSPLFPTLLS FT FIGRMNRGNVLIDLLRAEVSYWEATGVKPSVSPLDLKLGKLAIKEEAAGKARVFAMADS FT ITQSVMAPLNSWVFSKLKDLPMDGTFNQQAPLNRLVQLYQDGLLHDVEFYSYDLSSATD FT RLPMAFQKQIISVLFGSKFAKDWATLLVGRDWYLKDIPYRYSVGQPMGALSSWAMLALS FT HHVIVQIAAMRVGKLPFTNYALLGDDIVIADKAVATSYHMIMTQILGVEINLSKSLVSN FT NSFEFAKRLVTMDGEVSAVGAKNLLVALKSRWGISSVILDLYNKGLALSEQDLRQRFSS FT IPTVSKQFGVDKLLWLVLGPFGFIPSKDGLSAFMKLNRSLSLVDMHILLSCVDEAKFDL FT DKKTWEANIQETVHTLLRFGMLSEPAGFEVFSDFTSSPLYSFIRGQFGNKLSALVQDKP FT VRRLIFDGPLLHFNFYTEGWCDGLMEHLTKKIQSDSQETVSPSNPFKDDKVILPLRGNI FT KGIFFKHVLALMAERDPATVMRWM" FT variation 246 FT /replace="c" FT /note="polymorphism" FT variation 332 FT /replace="a" FT /note="polymorphism" FT variation 349 FT /replace="c" FT /note="polymorphism" FT variation 640 FT /replace="t" FT /note="polymorphism" FT variation 724 FT /replace="g" FT /note="polymorphism" FT variation 1654 FT /replace="a" FT /note="polymorphism" FT variation 1738 FT /replace="g" FT /note="polymorphism" FT variation 1970 FT /replace="c" FT /note="polymorphism" FT variation 1997 FT /replace="c" FT /note="polymorphism" FT variation 2005 FT /replace="g" FT /note="polymorphism" FT variation 2256 FT /replace="c" FT /note="polymorphism" FT variation 2345 FT /replace="t" FT /note="polymorphism" XX SQ Sequence 2617 BP; 789 A; 486 C; 512 G; 830 T; 0 other; aj004930 Length: 2617 14-NOV-2006 Type: N Check: 2700 .. 1 agtatagctt aagctatact caaggactac gtcctccctc agagaattaa 51 cacccctctg agatggatgg aaacttgttt atactttcgc tatagcttta 101 cgcgtatagg gcagtacctt ccccgccgtg cgatcaatta acgtaattgt 151 taatgaactc acaaataaag aatgtttacc agttctttat ggcgattccc 201 tgtaagatac cttactttag tagtaagtgt gtcttccatc ggttaaatca 251 tataaatata ataaaaccat gaaaagacta acactttcac aaaacaagag 301 taatcaactt acgaataatg atttatctaa tgttggatat ataactaaac 351 agttatttcc tcattgaata agattattag tatgaagctt acaattgtct 401 cctgctccgt acaagaagtt cggatcgaga atagcaattc tttgaaaggc 451 taacggtgtt tctttcaccg ttcagtactt aaaagaatgt actagaatcg 501 tccaacattt tgtgtcgggc catccggtat tcgtcactga cgtaatgccg 551 attggtctag ctggaggact ccctactata ataccgggaa ccttaagaac 601 tcttttgaga tctaaggatt ctagtactat aaggggagtc ttgtctacct 651 tggcagtata tagaataatg aaaatgcctt gtgtacttaa gttagagtca 701 atcacagatc cttttaaagg gatttctgat actcttccta agtccgagat 751 cattaacgga ttagcgtcat tgggttttga aattcctaag ggaagatcaa 801 agcacctgtt gaccttatct aatccgatta tttatctatt atctgccggg 851 ccgaatcact ctatatcaat gatgggtatc tgaaaagata tctatgcatg 901 atatgtaagt ccgttattcc ctactcttct ttcttttata ggaaggatga 951 atagaggtaa cgttcttatt gatttgttaa gagccgaagt ttcttactga 1001 gaggcaacag gggttaaacc ctctgtcagt cccttagatc tgaaactagg 1051 aaaactagca atcaaagagg aagcagccgg aaaggctaga gtcttcgcca 1101 tggcggattc cattacacag agtgtaatgg ccccgctgaa tagttgagtc 1151 tttagtaaat taaaggacct tccaatggat ggtacattta atcaacaagc 1201 tccactaaac agattagttc aactttatca agatggactt ctccatgacg 1251 tagaattcta ttcttacgat ctgagttctg ctaccgatag attacctatg 1301 gcctttcaga agcaaattat atccgtatta ttcggatcta aatttgctaa 1351 ggattgggct actcttcttg ttggaagaga ctggtatctt aaggatatac 1401 cttatagata ctcagttggg caacctatgg gagccttatc atcatgagca 1451 atgcttgcat tgtctcatca tgtaattgta caaatagctg caatgagagt 1501 tggtaaactc ccattcacta attatgcgtt acttggtgat gatatcgtaa 1551 tagctgataa agctgttgcg acatcttatc acatgataat gactcagatc 1601 cttggggttg aaatcaactt atccaaatca cttgtctcta acaactcttt 1651 cgagtttgct aagagattgg tgactatgga tggggaagtt tcagctgtgg 1701 gagctaagaa tttattagta gctctaaaat ctagatgagg aatctcgtct 1751 gtgattttag atctatataa taaaggatta gcactttccg aacaagatct 1801 aaggcaaaga ttttcatcta ttcctactgt ttcaaaacag tttggagttg 1851 ataaacttct ttgactagtt cttggtccgt ttggttttat cccatctaaa 1901 gatggtctat cagcttttat gaagttgaat agatcgctct ctttagtaga 1951 tatgcatatt ttgctatctt gtgttgacga agctaagttt gacttagata 2001 agaaaacatg agaagctaat atacaggaaa cagtccatac cttattaagg 2051 tttggaatgt tatctgaacc agctggcttt gaagtctttt cggacttcac 2101 ttcttcaccg ttatactctt tcataagagg gcagtttgga aacaaacttt 2151 ccgctcttgt gcaagataaa ccggtgagaa ggctaatctt tgacgggcca 2201 ctattgcact ttaacttcta tactgaaggt tggtgcgatg gtttaatgga 2251 acacttgact aagaaaatcc aatcggattc tcaagagaca gtatctccat 2301 ctaacccgtt caaggatgat aaggtcatct taccgttaag ggggaacatt 2351 aaaggaattt tctttaaaca tgttctcgcc ttaatggcag aaagggatcc 2401 agctacagta atgagatgaa tgtaagaaca ttcatatcct tcaccgtagg 2451 ggcggactag aatccaatac acataggaat cctatatgtg gggaaactac 2501 gcttagagac tactttgtct ttcaaatatg actactccct ctcatccatt 2551 ggtctgttaa accaatgtgg tgatgatagg taagatgcaa atttaaaggc 2601 ttatgtatat ctctaag