Sequence of DPV Ophiostoma mitovirus 3a

Ophiostoma mitovirus 3a gene encoding RNA-dependent RNA polymerase, genomic RNA

ACC No: AJ004930

Dated: 2006-11-14 | Length: 2617 | CRC: 957792720

                
ID   AJ004930; SV 1; linear; genomic RNA; STD; VRL; 2617 BP.
XX
AC   AJ004930;
XX
DT   24-SEP-1998 (Rel. 57, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 5)
XX
DE   Ophiostoma mitovirus 3a gene encoding RNA-dependent RNA polymerase, genomic
DE   RNA
XX
KW   RNA-dependent RNA polymerase.
XX
OS   Ophiostoma mitovirus 3a
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus.
XX
RN   [1]
RP   1-2617
RA   Buck K.W.;
RT   ;
RL   Submitted (24-MAR-1998) to the EMBL/GenBank/DDBJ databases.
RL   Buck K.W., Biology, Imperial College of Science, Technology and Medicine,
RL   Prince Consort Road, London, SW7 2BB, U.K. .
XX
RN   [2]
RX   DOI; 10.1006/viro.1998.9178.
RX   PUBMED; 9657003.
RA   Hong Y., Cole T.E., Brasier C.M., Buck K.W.;
RT   "Evolutionary relationships among putative RNA-dependent RNA polymerases
RT   encoded by a mitochondrial virus-like RNA in the Dutch elm disease fungus,
RT   Ophiostoma novo-ulmi, by other viruses and virus-like RNAs, and by the
RT   Arabidopsis mitochondrial genome";
RL   Virology 246(1):158-169(1998).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2617
FT                   /organism="Ophiostoma mitovirus 3a"
FT                   /specific_host="Ophiostoma novo-ulmi"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /db_xref="taxon:198597"
FT   CDS             269. .2425
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:O92614"
FT                   /db_xref="InterPro:IPR000408"
FT                   /db_xref="InterPro:IPR008686"
FT                   /db_xref="UniProtKB/TrEMBL:O92614"
FT                   /protein_id="CAA06228.1"
FT                   /translation="MKRLTLSQNKSNQLTNNDLSNVGYITKQLFPHWIRLLVWSLQLSP
FT                   APYKKFGSRIAILWKANGVSFTVQYLKECTRIVQHFVSGHPVFVTDVMPIGLAGGLPTI
FT                   IPGTLRTLLRSKDSSTIRGVLSTLAVYRIMKMPCVLKLESITDPFKGISDTLPKSEIIN
FT                   GLASLGFEIPKGRSKHLLTLSNPIIYLLSAGPNHSISMMGIWKDIYAWYVSPLFPTLLS
FT                   FIGRMNRGNVLIDLLRAEVSYWEATGVKPSVSPLDLKLGKLAIKEEAAGKARVFAMADS
FT                   ITQSVMAPLNSWVFSKLKDLPMDGTFNQQAPLNRLVQLYQDGLLHDVEFYSYDLSSATD
FT                   RLPMAFQKQIISVLFGSKFAKDWATLLVGRDWYLKDIPYRYSVGQPMGALSSWAMLALS
FT                   HHVIVQIAAMRVGKLPFTNYALLGDDIVIADKAVATSYHMIMTQILGVEINLSKSLVSN
FT                   NSFEFAKRLVTMDGEVSAVGAKNLLVALKSRWGISSVILDLYNKGLALSEQDLRQRFSS
FT                   IPTVSKQFGVDKLLWLVLGPFGFIPSKDGLSAFMKLNRSLSLVDMHILLSCVDEAKFDL
FT                   DKKTWEANIQETVHTLLRFGMLSEPAGFEVFSDFTSSPLYSFIRGQFGNKLSALVQDKP
FT                   VRRLIFDGPLLHFNFYTEGWCDGLMEHLTKKIQSDSQETVSPSNPFKDDKVILPLRGNI
FT                   KGIFFKHVLALMAERDPATVMRWM"
FT   variation       246
FT                   /replace="c"
FT                   /note="polymorphism"
FT   variation       332
FT                   /replace="a"
FT                   /note="polymorphism"
FT   variation       349
FT                   /replace="c"
FT                   /note="polymorphism"
FT   variation       640
FT                   /replace="t"
FT                   /note="polymorphism"
FT   variation       724
FT                   /replace="g"
FT                   /note="polymorphism"
FT   variation       1654
FT                   /replace="a"
FT                   /note="polymorphism"
FT   variation       1738
FT                   /replace="g"
FT                   /note="polymorphism"
FT   variation       1970
FT                   /replace="c"
FT                   /note="polymorphism"
FT   variation       1997
FT                   /replace="c"
FT                   /note="polymorphism"
FT   variation       2005
FT                   /replace="g"
FT                   /note="polymorphism"
FT   variation       2256
FT                   /replace="c"
FT                   /note="polymorphism"
FT   variation       2345
FT                   /replace="t"
FT                   /note="polymorphism"
XX
SQ   Sequence 2617 BP; 789 A; 486 C; 512 G; 830 T; 0 other;

aj004930 Length: 2617  14-NOV-2006  Type: N  Check: 2700  ..

       1  agtatagctt aagctatact caaggactac gtcctccctc agagaattaa
      51  cacccctctg agatggatgg aaacttgttt atactttcgc tatagcttta
     101  cgcgtatagg gcagtacctt ccccgccgtg cgatcaatta acgtaattgt
     151  taatgaactc acaaataaag aatgtttacc agttctttat ggcgattccc
     201  tgtaagatac cttactttag tagtaagtgt gtcttccatc ggttaaatca
     251  tataaatata ataaaaccat gaaaagacta acactttcac aaaacaagag
     301  taatcaactt acgaataatg atttatctaa tgttggatat ataactaaac
     351  agttatttcc tcattgaata agattattag tatgaagctt acaattgtct
     401  cctgctccgt acaagaagtt cggatcgaga atagcaattc tttgaaaggc
     451  taacggtgtt tctttcaccg ttcagtactt aaaagaatgt actagaatcg
     501  tccaacattt tgtgtcgggc catccggtat tcgtcactga cgtaatgccg
     551  attggtctag ctggaggact ccctactata ataccgggaa ccttaagaac
     601  tcttttgaga tctaaggatt ctagtactat aaggggagtc ttgtctacct
     651  tggcagtata tagaataatg aaaatgcctt gtgtacttaa gttagagtca
     701  atcacagatc cttttaaagg gatttctgat actcttccta agtccgagat
     751  cattaacgga ttagcgtcat tgggttttga aattcctaag ggaagatcaa
     801  agcacctgtt gaccttatct aatccgatta tttatctatt atctgccggg
     851  ccgaatcact ctatatcaat gatgggtatc tgaaaagata tctatgcatg
     901  atatgtaagt ccgttattcc ctactcttct ttcttttata ggaaggatga
     951  atagaggtaa cgttcttatt gatttgttaa gagccgaagt ttcttactga
    1001  gaggcaacag gggttaaacc ctctgtcagt cccttagatc tgaaactagg
    1051  aaaactagca atcaaagagg aagcagccgg aaaggctaga gtcttcgcca
    1101  tggcggattc cattacacag agtgtaatgg ccccgctgaa tagttgagtc
    1151  tttagtaaat taaaggacct tccaatggat ggtacattta atcaacaagc
    1201  tccactaaac agattagttc aactttatca agatggactt ctccatgacg
    1251  tagaattcta ttcttacgat ctgagttctg ctaccgatag attacctatg
    1301  gcctttcaga agcaaattat atccgtatta ttcggatcta aatttgctaa
    1351  ggattgggct actcttcttg ttggaagaga ctggtatctt aaggatatac
    1401  cttatagata ctcagttggg caacctatgg gagccttatc atcatgagca
    1451  atgcttgcat tgtctcatca tgtaattgta caaatagctg caatgagagt
    1501  tggtaaactc ccattcacta attatgcgtt acttggtgat gatatcgtaa
    1551  tagctgataa agctgttgcg acatcttatc acatgataat gactcagatc
    1601  cttggggttg aaatcaactt atccaaatca cttgtctcta acaactcttt
    1651  cgagtttgct aagagattgg tgactatgga tggggaagtt tcagctgtgg
    1701  gagctaagaa tttattagta gctctaaaat ctagatgagg aatctcgtct
    1751  gtgattttag atctatataa taaaggatta gcactttccg aacaagatct
    1801  aaggcaaaga ttttcatcta ttcctactgt ttcaaaacag tttggagttg
    1851  ataaacttct ttgactagtt cttggtccgt ttggttttat cccatctaaa
    1901  gatggtctat cagcttttat gaagttgaat agatcgctct ctttagtaga
    1951  tatgcatatt ttgctatctt gtgttgacga agctaagttt gacttagata
    2001  agaaaacatg agaagctaat atacaggaaa cagtccatac cttattaagg
    2051  tttggaatgt tatctgaacc agctggcttt gaagtctttt cggacttcac
    2101  ttcttcaccg ttatactctt tcataagagg gcagtttgga aacaaacttt
    2151  ccgctcttgt gcaagataaa ccggtgagaa ggctaatctt tgacgggcca
    2201  ctattgcact ttaacttcta tactgaaggt tggtgcgatg gtttaatgga
    2251  acacttgact aagaaaatcc aatcggattc tcaagagaca gtatctccat
    2301  ctaacccgtt caaggatgat aaggtcatct taccgttaag ggggaacatt
    2351  aaaggaattt tctttaaaca tgttctcgcc ttaatggcag aaagggatcc
    2401  agctacagta atgagatgaa tgtaagaaca ttcatatcct tcaccgtagg
    2451  ggcggactag aatccaatac acataggaat cctatatgtg gggaaactac
    2501  gcttagagac tactttgtct ttcaaatatg actactccct ctcatccatt
    2551  ggtctgttaa accaatgtgg tgatgatagg taagatgcaa atttaaaggc
    2601  ttatgtatat ctctaag