Sequence of DPV Potato mop-top virus
Potato mop-top virus RNA1 complete genome, Swedish isolate (Sw)
ACC No: AJ238607
Dated: 1999-10-15 | Length: 6043 | CRC: -1008414258
!!NA_SEQUENCE 1.0
ID PMO238607 standard; RNA; VRL; 6043 BP.
XX
AC AJ238607;
XX
SV AJ238607.1
XX
DT 15-OCT-1999 (Rel. 61, Created)
DT 15-OCT-1999 (Rel. 61, Last updated, Version 1)
XX
DE Potato mop-top virus RNA1 complete genome, Swedish isolate (Sw)
XX
KW polymerase.
XX
OS Potato mop-top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-6043
RA Savenkov E.I.;
RT ;
RL Submitted (27-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL Savenkov E.I., Plant Biology, Slu, box 7080, se-750 07, Uppsala, SWEDEN.
XX
RN [2]
RA Savenkov E.I., Sandgren M., Valkonen J.P.T.;
RT "Complete sequence of RNA 1 and the presence of tRNA-like structures in all
RT RNAs of Potato mop-top virus, genus Pomovirus";
RL J. Gen. Virol. 80:2779-2784(1999).
XX
DR SPTREMBL; Q9QBU0; Q9QBU0.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6043
FT /country="Sweden"
FT /db_xref="taxon:37128"
FT /note="RNA1 RNA"
FT /note="genus Pomovirus"
FT /virion
FT /organism="Potato mop-top virus"
FT /isolate="Swedish (Sw)"
FT CDS 115. .4026
FT /db_xref="SPTREMBL:Q9QBU0"
FT /note="ORF1"
FT /note="readthrough protein"
FT /product="polymerase"
FT /function="replication"
FT /protein_id="CAB58364.1"
FT /translation="MDQSILSKITSDDYVNAILHTSATRVGSDLHNAMCNVIVDQIKDS
FT TEKNKKKKKIDVKRNLNEDQIQLLAELFPERRVVTSSVHRGTHSMAAAMRKIETDVIFT
FT SFPKNGVIYDIGGNWATHAKRDDGGFVHCCCPILDFRDAQRKMTRLIDFNRFIDDAKVV
FT SAEKAAVAAQIKKDCDLISENAKKDAYDANDLNGTWFCQNKFEDCVYDHSTLGDGKKEA
FT YGMAIHSIYDIHLVDLVSAMERKKVRVLKGTFLFSADIIIGKKRGELPSVNGFYIIDGE
FT SIKYSFYDDPNCGYEHNLNSLMLYVTKTFVKAAGGAVYYLELTEMRGDTMFFTITDASE
FT ARVMGVLHDSSTKCLPLNKRDLVVFPLFDIDRATDELVFREELLSREFVNRALEYAFQL
FT KDNQVTAEGLISYFASTNNAVVIGGSARKTSEKVDPKLLPMITTTLMVYQELQKAKQKR
FT VLGKLKSKVKEELTLSGILESVVHRVFGRQSLYQRGLGVFAKWMQYSYGQDLVGIHDVP
FT LYLEINDRIKLGSALKNVNGFSLSFSELDEKVSLYEEYERERQRISDEIVSEKIGLIGE
FT GYVKVGESSLKPKQKVASRDGMAQWVSGECHLYNTMKCEEKPVEKPRRFSKVVLEEWIS
FT EGNCFALNNSFGDEVHWFDSLKEACGRAWRKQVSAVTFSDAEYFDNIENTENEELEEEE
FT VIKTTEQVEQDWPIGNLPDVDPDDSASAQVCLTESASTSSDEDCDPMEQLIVAACERAF
FT ATKKFEEVTMDSQVVQSEEIEIVREGEHAHANLSSGESESSSQSQELVAVGSVPLSKWA
FT QMVEDSEVRARQCAVDHDLSWDEVKYAKMPERPEEAEGDDFRTKAKREFLWYLKCKLVA
FT DKSTLVEIMRDFIYGQFHSGACETPKNACFLSYEKNVCGEWMFGKRYRHPSKGASSYAV
FT RFTREDWKRAKLIKLQWKNAKAEENGEMSSDNSDKPIVPQGETGIYLFCDITFLMNEIP
FT ILNRLEISFKKRVQRRAPRITLVDGVPGCGKSTYVVKEANLVNQYVVTIGREAAEDLRE
FT RFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCADDLSARSV
FT ICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVT
FT SANPLVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMRQYLGRGNWNVNTVHE
FT SQGKTYDNVVLCRLKATDNEIYPGGRNSSPYMVVGVTRHRRSLVYYTKAEDKLYFDLAE
FT MLSVQEGKLMKHLHEEGVK"
FT mat_peptide 118. .4023
FT /product="polymerase"
XX
SQ Sequence 6043 BP; 1791 A; 935 C; 1578 G; 1739 T; 0 other;
AJ238607 Length: 6043 December 21, 2001 15:37 Type: N Check: 1178 ..
1 gtatttttat caactctaac tagccaagtg cttaattgag tggttggaga
51 ccagtgattt tgaagcgacc gcttgcgata aaacgcttca aaaaatttgc
101 tgttgttata ttcaatggat cagtctattt tgagtaaaat caccagtgat
151 gattatgtga atgcgatact tcacactagt gccactagag tgggttcgga
201 tttacataat gctatgtgta atgtaatagt agatcagata aaagatagta
251 cagaaaaaaa caaaaagaaa aagaaaatag atgtaaaaag gaatcttaat
301 gaggatcaga tacagttgct tgctgaactt tttcctgaaa gaagagtggt
351 gacatcttca gtgcacagag gtacgcacag catggctgcg gccatgagaa
401 agatagaaac cgatgttatt ttcacctcgt ttccaaagaa tggagtgata
451 tatgatattg gtggaaattg ggcgacccac gccaaacgag atgatggtgg
501 ttttgtgcat tgttgttgtc cgattctcga ctttcgtgat gcgcagagaa
551 aaatgacaag attgatcgat tttaatcggt ttatcgatga tgctaaagtg
601 gtgagcgctg aaaaagctgc agtagcggcc cagataaaga aggactgtga
651 tcttataagt gagaatgcga agaaagatgc ttatgatgcc aatgatctta
701 atggaacttg gttttgtcag aataagtttg aggattgtgt atacgatcac
751 agcactcttg gagatgggaa aaaggaggcc tatggtatgg cgatacacag
801 catttatgac atacatttgg ttgatcttgt gtctgctatg gaaagaaaga
851 aggtgagggt acttaagggc acttttttgt tttctgctga tataataatt
901 ggaaagaaaa ggggtgagtt acctagcgtc aatgggtttt acataattga
951 cggtgagtca ataaaataca gcttttacga tgatcctaat tgtggctatg
1001 agcataatct taactcgttg atgttgtatg tgacaaaaac ctttgtgaaa
1051 gctgcaggtg gtgccgttta ttatttggaa ctgacggaga tgaggggcga
1101 tacgatgttt tttaccatca cggatgcttc tgaagcgaga gtgatgggtg
1151 ttttacacga tagctccact aaatgtctgc ctcttaacaa acgggatctg
1201 gtggttttcc cattgtttga tattgacagg gccaccgatg aattggtatt
1251 tagagaagaa ttgttaagca gagagtttgt aaatcgtgct ttggagtatg
1301 cttttcagtt aaaggacaac caggtgacgg cggaaggttt aatcagttac
1351 tttgcatcaa ccaacaatgc cgttgtgatc ggcggttccg ctagaaagac
1401 ttctgaaaag gttgatccta agctgttacc gatgattact accactctga
1451 tggtttacca agaattgcag aaagctaaac agaagagagt gttgggaaaa
1501 ttgaaaagca aagtgaaaga agagttaacc ttgtcgggta tactagagag
1551 cgtggtgcat agagtgtttg ggagacaaag cctgtatcaa agaggtttgg
1601 gcgtgtttgc taaatggatg cagtacagtt atggtcaaga tttagttgga
1651 attcatgatg tccctttgta tttggagatt aatgaccgga ttaaattagg
1701 gtctgctctg aaaaatgtta atggattttc actgagtttc tctgaattgg
1751 atgagaaagt gagtctatat gaggagtatg agcgagaaag acaacgaata
1801 tcggatgaga ttgtcagtga aaaaattggt ttgattggcg aaggatatgt
1851 gaaagtcggg gagtccagct taaaaccaaa gcagaaagtt gcgtcccgtg
1901 acgggatggc gcagtgggta agtggtgagt gccacttgta taacaccatg
1951 aagtgtgagg aaaaaccagt ggagaagccg aggcgcttta gtaaagtagt
2001 tttggaggaa tggatttctg aaggtaattg cttcgcactt aacaacagtt
2051 ttggtgacga agtgcactgg tttgattctc tgaaagaggc gtgcgggaga
2101 gcatggcgga aacaggtttc ggctgtaaca ttttcagatg ctgaatattt
2151 tgataacatt gagaatactg agaatgagga acttgaggaa gaagaggtga
2201 ttaaaaccac tgaacaagtg gaacaagatt ggccgatagg taacttgcct
2251 gacgtcgatc ctgatgactc tgcttccgct caagtgtgtt taacggaatc
2301 agcttcaact agtagtgatg aagattgtga tcctatggaa caattgatag
2351 tagcagcttg cgagcgagcg tttgcaacca aaaagtttga ggaagtcaca
2401 atggattcgc aggttgtgca aagtgaggaa atagagattg ttcgcgaggg
2451 cgagcatgct catgcaaatt tatcaagtgg tgagtcagag agttcaagtc
2501 aatcacaaga gctggtagcg gtcggtagcg tacctctcag caaatgggcg
2551 cagatggtcg aagactccga ggtcagagct agacaatgtg cagttgacca
2601 cgacctgagc tgggatgagg tgaaatacgc aaaaatgcct gagagaccgg
2651 aagaagctga aggtgatgac tttcgcacga aagcaaaaag agaatttctt
2701 tggtacttga aatgtaagtt ggtggcggac aaatctacgt tagtggagat
2751 tatgcgcgat tttatttatg gtcagtttca cagcggtgct tgtgagactc
2801 ctaagaatgc gtgttttctg tcctacgaga aaaatgtgtg tggagaatgg
2851 atgttcggta aaaggtatcg tcatccttct aagggagcca gctcttatgc
2901 agtaaggttt accagagagg attggaagcg tgctaagttg ataaagttgc
2951 agtggaaaaa tgctaaagct gaagaaaatg gtgaaatgtc atcggacaac
3001 agtgataaac cgatcgtgcc acagggcgag acgggaattt atctgttttg
3051 tgacatcact tttttgatga atgaaattcc gattttgaac aggctggaaa
3101 tctcatttaa gaagagggtg caaagaaggg cgcccagaat cacactcgtt
3151 gatggtgtac ccggatgtgg aaagtcgact tatgtggtga aagaagcgaa
3201 cttagtcaat cagtatgttg tgacaatcgg tagagaagct gctgaagatc
3251 tgagggagag gtttaaatct gagagaaatg ctaccgccac acagttgaaa
3301 cgtgtgagga ctgtagattc ttatttgctc aatgataccc aatctcgtgc
3351 caatgtgctt cattttgatg aagcgttgat ggcgcatgct ggcatggtgt
3401 atttttgtgc ggatgatttg tctgcaagaa gtgtgatatg tcaaggtgac
3451 tctcagcaga tcccgtttat taatagagtg gagtctatta cgcttcgata
3501 ctccaagttg gaaattgata atgttgtgga aaaaagactg acttatagat
3551 cgcctttgga tgtggcatcg tacctgacta agaaaaattt ttatggtaca
3601 tccgtggtga ctagtgctaa tccattggta aggtcgttga agaccgttgg
3651 acccagagat ggtatgactt ccatttatag cataccgaaa ataccaggta
3701 cccagtattt gacttttttg cagagtgaaa aggaagagat gcgtcaatac
3751 ttgggaagag gtaactggaa tgtgaacact gtgcatgaaa gtcagggaaa
3801 aacatacgac aatgttgtgt tatgcaggtt gaaggcgacc gataatgaga
3851 tctaccctgg tggtaggaac tcttcgcctt acatggttgt cggtgttacc
3901 cgtcacaggc gttctttggt gtactacact aaggcagagg ataaattgta
3951 tttcgatttg gccgaaatgt tatctgtgca ggaagggaaa ctgatgaaac
4001 atttgcatga ggaaggtgtg aaatgacgcc aggcgtcaaa gtatgaggag
4051 ataatggtgt ccgataatgc tgtgactgtc cctgatgtgg gtaatttggt
4101 tgatttgcaa gagatgtatg acatagcatt tcccgggaat tccattgttg
4151 acacttactt tgacggttat gaagtggcca caggaggtct gcagatagat
4201 atgaatgctt cccttactta ttaccctaac aggcaaatga aaatgtggaa
4251 agagtgccga ggtatgtatc ctatgcttag gacagctatg cccgagaaaa
4301 gacaaagcgg tttggcagaa ggtttgttgg ctttgaacaa gcgaaatatg
4351 gctgcaccta agttgcagga atctgtgaat gagttcgaag tgattgaaag
4401 cacgattgag aaagcaaaaa aggtattctt tgatgagagt cgtattgata
4451 actctaagtt ggaaacattt gaaggtgcgg cgagatggtg ggtcaaacaa
4501 tcttgcacgg cgcaaaagca gatgttagca gatgttagaa ctctgagtga
4551 aatcgatgtg acatcataca attttatgat aaagggtgat gtaaaaccga
4601 aattggactt gtcaccgcag tctgagtatt ctgcgcttca aacagtagtg
4651 taccctgata agattgtgaa tgctttgttt ggaccgataa tgaaagaaat
4701 caatgagaga ataagagttg ctttgaaacc tcatgtgatt tataacacga
4751 ggatgacgtc tgacgagctg gatcctgcag tggagtttct tgatgtaaga
4801 gaagaccatg agtccgttga gattgatttt tcaaagtttg ataagtcgaa
4851 aacttcgttg catattcggg ttgttattga actttacaag ttgtttgggt
4901 tagatgagat gatcgcttac ttgtgggaga agtcgcagtg tcagaccacc
4951 attaaagata gggtgaatgg tattatagcg cagattcttt atcagcagga
5001 atcaggtaat tgtgatactt atggttctaa tacttggtct gccgcattgt
5051 cattgttaga gtcactaccc ttggagaaag cgacttttat gatatttggt
5101 ggagacgact ctttaatatt tttcccgaag ggcatggtga ttgaagatcc
5151 gtgtaggaga ttagcttcta tgtggaactt tgattgcaag ctgtttaatt
5201 tcaaaaataa ttcattttgt ggaaaatttt tgataaaagt gggagaaaaa
5251 tacaagttcg ctccggatcc ttataagttg cttacgaaac tgggcaggaa
5301 agacataaaa aattctgatt tgttaagtga gatttttact tctataggtg
5351 ataattataa gtcatatgat gactataggg tgttagaagc tcttaacgta
5401 gcagttatgg aacgttataa gttgcgttgt gatgtcatgt ttggtttgtt
5451 agcgttaaag aaatatataa actcattcga tctgtttgct tctttgttca
5501 gccataaagg caggtaccag cgtgttgaag tgggaagaaa tttcgagtgg
5551 tgatcacgag agatttttaa gatcgaggtg aagccccaca gttagtattc
5601 ttgtcgctgc aaagtgtgaa gcttattttc gtttgtatac tatttcttat
5651 atgttaatgc ttttacgtgg ttttgcttag taactttgtt tcataagttt
5701 ttaaatcttt tgggtcgtgc atggacctag tcaaaacatg ccgtggacat
5751 tacgtcaaat gttagtgctt acaagacttc ggtctgtggt tcacttaaat
5801 cgaaccattg gagtgatcca acgttaatac tgcgttaagt attggtgctt
5851 ccagggctaa accgtggttc accttaatcg aaccagtctc gcgagggaca
5901 aaactgactt tctagctgtt tttgagataa ttccaaaaaa ctcattatcc
5951 ggcctaagga agagcggcca gttgctgctg cgatcaagac acgatcgttc
6001 aaaagggtgc aactcccccc cccttggagg gtatccaaga cca