Sequence of DPV Tomato bushy stunt virus
Tomato bushy stunt virus genomic RNA, statice isolate, complete genome
ACC No: AJ249740
Dated: 2005-04-15 | Length: 4770 | CRC: 513544631
!!NA_SEQUENCE 1.0
ID TBU249740 standard; genomic RNA; VRL; 4770 BP.
XX
AC AJ249740;
XX
SV AJ249740.1
XX
DT 23-SEP-1999 (Rel. 61, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE Tomato bushy stunt virus genomic RNA, statice isolate, complete genome
XX
KW 19K gene; 22K gene; 33K gene; 92K gene; capsid protein; complete genome;
KW cp gene; movement protein; RNA-dependent RNA polymerase;
KW symptom modulating protein.
XX
OS Tomato bushy stunt virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RP 1-4770
RA Russo M.;
RT ;
RL Submitted (20-SEP-1999) to the EMBL/GenBank/DDBJ databases.
RL Russo M., Centro Studio Virus e Virosi Colture Mediterranee, Consiglio
RL Nazionale delle Ricerche, Via Amendola 165/A, 70126 Bari, ITALY.
XX
RN [2]
RA Galetzka D., Russo M., Rubino L., Krczal G.;
RT "Molecular characterization of a tombusvirus associated wiyh a disease of
RT statice (Goniolimon tataricum (L.) Boiss.)";
RL J. Plant Pathol. 82:151-155(2000).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4770
FT /country="Germany"
FT /db_xref="taxon:12145"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Tomato bushy stunt virus"
FT /isolate="statice"
FT /specific_host="Goniolimon tataricum"
FT /lab_host="Nicotiana benthamiana"
FT 5'UTR 1. .168
FT CDS 169. .1059
FT /db_xref="GOA:Q9QBL6"
FT /db_xref="UniProt/TrEMBL:Q9QBL6"
FT /gene="33K"
FT /product="putative RNA-dependent RNA polymerase"
FT /function="virus genome replication"
FT /protein_id="CAB56479.1"
FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIECDSDSITKFVIELLKTDCAAKWEWFMKRRQRGDYIIPLSIASLPIIPLLSYTTRV
FT RAVSVKAFGNELSFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFR
FT LRTEARTHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVTASTGRPRRRPYAAK
FT IAQVARAKVGYLRNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVK"
FT CDS 169. .2625
FT /db_xref="GOA:Q9IW60"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9IW60"
FT /transl_except=(pos:1057. .1059,aa:OTHER)
FT /gene="92K"
FT /product="RNA-dependent RNA polymerase"
FT /function="virus genome replication"
FT /protein_id="CAB56480.1"
FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIECDSDSITKFVIELLKTDCAAKWEWFMKRRQRGDYIIPLSIASLPIIPLLSYTTRV
FT RAVSVKAFGNELSFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFR
FT LRTEARTHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVTASTGRPRRRPYAAK
FT IAQVARAKVGYLRNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF
FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLTRTPQPTKGAFGRLSPFRKAV
FT CEKVGVAHRYGYDGFLSYYSGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTAK
FT SDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK
FT WDRFDKPVAIGLDASRFDQHCSMEALQYEHSFYRAMYPGNKLLSKLLEWQLHNKGKGYV
FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLIVER
FT RNLKQVQRTLPEYFLNLGYTMKVEAPVFQMEEVEFCQAHPVQFQGGWKMVRNVRTAMSK
FT DVHCVNNIRDLATRKAWSNAQHHGGLALSAGIPVVERFYSRFTLYDTPRKHQRIDTVTN
FT VHKWRGSGGSYVVTPEARASFWAAFGLTGDEQLALEDRLDRWEMDLFGIEGVDAHEPSI
FT LDSAVA"
FT CDS 2649. .3815
FT /db_xref="GOA:Q9QBL5"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q9QBL5"
FT /gene="CP"
FT /product="capsid protein"
FT /function="coating the virus genome"
FT /protein_id="CAB56481.1"
FT /translation="MAMTTRNNNNVLSVSKKQLGVLAASAAAGALRNYISESGPALLQS
FT AVGLGKKALNKVRNRRKQGNQQIITHVGGVGGSIMAPVAVSRQLIGSKPKFTGKTSGSV
FT TVTHREYLTQVNNSSGFVVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYSFNNVVLH
FT YVPLCGTTEVGRVALYFDKDSQDLEPADRVELANFGVLKETAPWAEAMLRIPTDKVKRY
FT CNDSATVDQKLIDLGQLGIATYGGAGTNAVGDVFISYSVTLYFPQPTNTLLSTRRLDLT
FT GSLADAAGPGYLVLTRTPTVLTHTFRATGTFNLFGGLRCLTSVTLGATGAVVINDILAI
FT DNVGTASAYFLNCTVSSLPATVTFTTTGISSATVNVVRSTRANVVNLL"
FT CDS 3851. .4420
FT /db_xref="GOA:Q9QBL4"
FT /db_xref="InterPro:IPR005332"
FT /db_xref="UniProt/TrEMBL:Q9QBL4"
FT /gene="22K"
FT /product="movement protein"
FT /function="cell-to-cell virus movement"
FT /protein_id="CAB56482.1"
FT /translation="MDTEYEQVNKPWNELYKETTLGNKLMVNVGMEDQEIPLLPSNFLT
FT KVRVGLSGGYITMRRFRIKIIPLVSRKAGVSGKLYLRDISDSTGRKLHCTESLDLGREI
FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVKWQFGLSKNCYSLPQSKW
FT KVMYQEDALKVLKPTKKKASKTGSSV"
FT CDS 3883. .4401
FT /db_xref="GOA:Q9QBL3"
FT /db_xref="HSSP:1R9F"
FT /db_xref="InterPro:IPR004905"
FT /db_xref="UniProt/TrEMBL:Q9QBL3"
FT /gene="19K"
FT /product="symptom modulating protein"
FT /function="modulating symptom severity"
FT /protein_id="CAB56483.1"
FT /translation="MERAIQGNDAREQAYGERWNGGSGDSTSPFKLPDESPSWTEWRLH
FT NDETISNQDNPLGFKESWGFGKVVFKRYLRFDGTETSLHRVLGSWTGDSVNYAASRFLG
FT FDQIGCTYSIRFRGISVTISGGSRTLQHLSEMAIRSKQELLQLTPVKVESNVSRGCPKG
FT VETYEEESE"
FT 3'UTR 4421. .4770
XX
SQ Sequence 4770 BP; 1252 A; 1006 C; 1309 G; 1203 T; 0 other;
AJ249740 Length: 4770 April 19, 2005 08:54 Type: N Check: 4203 ..
1 agaaattccc caggatttct cgacctagtt cgttgttatc tggtgacttg
51 cgctaactgt tgctttgcgt agagaatttc tctcctttgt taattctttg
101 acttaggggt ttgaaggttg ggtctacctt tcggggggat aaattgtaac
151 ttccaacaaa caagcaacat ggagaccatt aagaggatga tttggcctaa
201 gaaagagatt tttgtgggtg atttcgcgat cggggttaat aggacggcac
251 cggtggacat cttccagttg gtgtgtcgtg tggttctgag atacatgagg
301 acagggaaaa tagagtgtga ttctgacagc ataacaaagt tcgtgattga
351 gcttttaaag actgattgtg ctgccaaatg ggagtggttc atgaagagac
401 ggcagagggg tgattacatc atccctctat ctatagcctc cctcccaatc
451 ataccgctgt tgagctatac cacgagggta cgcgcagtct cagtcaaggc
501 attcggtaat gagttatcat tcaacatccg ggtgcctaga ccatctgtac
551 ctaagaaagg gttgctcctc agactggcgg caggtttagc gctagcacct
601 atatgcgcgc tagccatgta cgctacccta cccagggaaa aactgtcggt
651 atttaggctt aggactgagg cacgaacaca catggaggat gagagagaag
701 cgacagattg tctggtggtt gagccggcac gggaacttaa gggtaaagat
751 ggtgaggatc tcctcactgg tagtaggatg actaaggtga ctgcatcaac
801 aggacgccct cgcagaaggc cctacgcggc aaagattgcg caggtggcga
851 gagcgaaggt gggttatcta agaaatactc ctgagaacag actcatctac
901 cagcgggtga tgatcgagat catggacaaa gattgcgtca ggtatgttga
951 cagggatgtc atattgccat tggctatagg atgctgtttt gtctatccgg
1001 atggagtgga ggagtcggcg gcactatggg gttcacagga atccctaggt
1051 gtcaaatagg gaggcctagt acgtctacct ggggttgtga cacagatcaa
1101 tcgagatatc ccatctgatg tgttactacc tcaggaggtg ctagaggttc
1151 gtacaggacc tcccaatgct aaggaccgta atatatttat ggttgctggt
1201 tgcccatcac aggcgcggtt cttagtacac aatcactgcc tgaaaaacct
1251 caaaaggggt cttgtggaga gagtcttctg tgtggagaga aacgggaagc
1301 tcactcgcac tccacaacct accaaaggag cctttggacg tctttccccg
1351 ttcaggaaag cagtttgtga gaaggttggg gtggcccacc gatatgggta
1401 tgatggtttc ctgtcatact acagtggtgc gaaactccgt acttacacac
1451 gagctgtgga gagtctgcat atcactcctg tttctgagag ggatagtcat
1501 ctgactacct tcgtgaaagc agagaagata tcgacggcca aaagtgaccc
1551 agcacccagg gtaatacagc ctcgaaaccc taggtacaat gtggaacttg
1601 gaagatatct gcggcatatg gaatccaagc tgatgaaagc tgttgatggc
1651 gtgttcggag agacaacatg catcaaagga tataccgctg atgaggtggg
1701 tgcaatcttt cgagagaagt gggataggtt tgataaacct gtagccattg
1751 gcctcgatgc atccaggttt gatcaacact gttccatgga agctttgcag
1801 tacgagcata gcttctacag ggccatgtac cctggcaaca agctgttaag
1851 caagttgttg gaatggcagc tccataataa aggtaaaggt tacgtcccgg
1901 acggaaccat tacgtatcga aaggagggct gccgcatgag tggggatata
1951 aacacctcgt tggggaatta cctattgatg tgtgcaatgg tacatgggta
2001 catgcgtcat ctggggataa atgaatttag tctggcaaac tgtggggatg
2051 actgtgttct aatcgtggaa cgtaggaatc tcaaacaggt gcagaggacg
2101 ttacctgagt atttcctgaa tctaggatat acaatgaagg tggaggcccc
2151 tgtgtttcaa atggaagagg ttgaattctg ccaggcacac cctgtacagt
2201 ttcaaggtgg ttggaagatg gtccgtaatg tccgcactgc tatgagcaaa
2251 gatgtgcact gtgttaataa catacgcgat ttggcgacga ggaaagcctg
2301 gagcaacgct cagcatcacg ggggtctggc gcttagtgcc ggcataccgg
2351 ttgttgagcg attctactcc aggtttacac tttatgatac tcctcgtaaa
2401 catcaacgta ttgacactgt cactaatgtt cacaagtggc gcggctctgg
2451 tgggagctat gttgtgactc ctgaagctag ggcaagcttt tgggctgcct
2501 ttggtttgac gggggatgag caactggctt tagaggatcg tctggataga
2551 tgggagatgg atctatttgg aattgaaggt gttgacgctc acgagcccag
2601 catccttgat tccgccgtag catgaccaag tacacacaaa cacaagagat
2651 ggcaatgaca acgagaaata acaacaatgt gctctctgtg agcaagaaac
2701 agttgggggt cctggcagca tctgccgctg cgggggctct gcgtaattat
2751 attagtgaga gtggcccggc actgctacaa tcggcagtgg gtttgggtaa
2801 gaaggccttg aataaggtga ggaatcggag gaaacaggga aatcagcaga
2851 tcattactca tgtaggcggc gtcgggggct caatcatggc tcctgtggca
2901 gtatccaggc aactaattgg tagtaagccg aaatttaccg gaaagacatc
2951 tggatctgtc acggttacgc accgcgagta ccttacgcaa gtaaacaact
3001 cttcaggatt tgtagtaaat gggggtattg tcggcaattt gttacaactc
3051 aacccgctga atggtacact gttctcatgg ttgccggcca tagcatccaa
3101 ttttgatcag tactcgttca acaatgttgt gttacattat gtccccctat
3151 gcggtactac tgaagtcggg cgtgtagcgc tatactttga taaggattca
3201 caagatcttg aacctgctga tagagtggag ttggcgaact tcggtgttct
3251 aaaggagaca gccccttggg ctgaggcaat gctgcgcata cccactgaca
3301 aagtgaagag atactgtaat gacagtgcta cagttgatca gaaacttata
3351 gatttgggac agcttggtat tgctacctac ggaggggcag gcactaacgc
3401 tgtgggtgat gtgtttatct cctacagtgt tacattgtac tttcctcaac
3451 ccaccaacac cctgttgagt acacgacggc ttgacctcac cggatctttg
3501 gctgatgctg cgggacctgg gtatcttgtg ctaacgagaa cacccacggt
3551 cttaacgcac acatttaggg cgactggcac cttcaacctc tttggagggc
3601 taaggtgttt aaccagtgtc actctcggag ctacgggggc tgtggttatt
3651 aatgacatac ttgcaattga taatgttggt acagccagtg cctacttcct
3701 caattgcacg gtatcttctc tgccagccac cgtgacattt actacaactg
3751 gaatatcctc cgccactgtt aatgtggtgc gtagtacacg agctaatgtt
3801 gttaacttac tatgatctct tgtgaggggc ctcttgaaca agaccagttc
3851 atggatactg aatacgaaca agtcaataaa ccatggaacg agctatacaa
3901 ggaaacgacg ctagggaaca agcttatggt gaacgttgga atggaggatc
3951 aggagattcc acttctccct tcaaacttcc tgacgaaagt ccgagttgga
4001 ctgagtggcg gctacataac gatgagacga tttcgaatca agataatccc
4051 cttggtttca aggaaagctg gggtttcggg aaagttgtat ttaagagata
4101 tctcagattc gacgggacgg aaacttcact gcacagagtc cttggatctt
4151 ggacgggaga ttcggttaac tatgcagcat ctcgatttct cggtttcgac
4201 cagatcggat gtacctatag tattcggttt cgaggaatta gtgtcaccat
4251 ttctggaggg tcgagaactc ttcagcatct cagtgaaatg gcaattcggt
4301 ctaagcaaga actgttacag cttaccccag tcaaagtgga aagtaatgta
4351 tcaagaggat gccctaaagg tgttgaaacc tacgaagaag aaagcgagta
4401 agacaggctc ttcagtctga gttcgcggaa acgagtgtga atctgacaac
4451 gtatgcaggt tactcgtgtt gggttctgga tgttatgatg acgagtcgtc
4501 gggctccgca ctgggtttgg tcacccaggg gatggagata tggaaagggt
4551 ctcgtgtgct atcagtcggt cgaaagacgc gcttgcaaca tgggcctata
4601 accggataag tcatagcaat accagccaac atgaattgga tgcctattta
4651 cgagaatcgg acgtcacttg tggaaacgtg cccagacacg gttgatctca
4701 cccttcgggg gggctataga gatcgctgga agcactaccg gacaaccgga
4751 acattgcaga aatgcagccc