Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus, segment 3
ACC No: AJ293984
Dated: 2003-03-25 | Length: 3572 | CRC: 501730123
!!NA_SEQUENCE 1.0
ID RBL293984 standard; RNA; VRL; 3572 BP.
XX
AC AJ293984;
XX
SV AJ293984.1
XX
DT 14-DEC-2001 (Rel. 70, Created)
DT 25-MAR-2003 (Rel. 75, Last updated, Version 2)
XX
DE Rice black streaked dwarf virus, segment 3
XX
KW segment 3.
XX
OS Rice black streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Fijivirus; Fijivirus group 2.
XX
RN [1]
RP 1-3572
RA Adams M.J.;
RT ;
RL Submitted (12-SEP-2000) to the EMBL/GenBank/DDBJ databases.
RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL AL5 2JQ, UNITED KINGDOM.
XX
RN [2]
RX MEDLINE; 21670006.
RX PUBMED; 11811683.
RA Zhang H., Chen J., Adams M.J.;
RT "Molecular characterisation of segments 1 to 6 of Rice black-streaked dwarf
RT virus from China provides the complete genome";
RL Arch. Virol. 146:2331-2339(2001).
XX
DR SPTREMBL; Q8UZ09; Q8UZ09.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3572
FT /country="China:Zhejiang"
FT /db_xref="taxon:10990"
FT /virion
FT /organism="Rice black streaked dwarf virus"
FT /specific_host="Rice"
FT /segment="3"
FT 5'UTR 1. .14
FT CDS 15. .3455
FT /db_xref="SPTREMBL:Q8UZ09"
FT /product="P3"
FT /function="unknown"
FT /protein_id="CAC82440.1"
FT /translation="MLKVNVQALIYPFSGQITDIRRNQLIPTAKFKHTVLHQPIFITKL
FT KNKTSPPDPSKSKNTLKVNPVWSNAFFDWNSALINPWTVLPSSTGSGSMSIPSSKNANS
FT DNAVLKNAEFINERLPSYIKLLFDSLDLKGNGYVNQFGFWALLYLDYSLHCLVPLEYYR
FT QMLNLRTKENVVFLDTYDEVDYAISYLSRFPKLLYINGHGRKFIKLPSFGKLGFTFEKD
FT NIIGNIGNDLQYWTLWPLHNDYTQADTNRPNHANILRNLSHFDNELVSIHYYPTFFYEH
FT YLYFETVQELIKHQIYNVIRTYRAQLKLQDNLGTNRLERRGYYLTAYSPFYESFTDAVV
FT AEFGELYLYLQLFGSLPFTSGNLNVIPNTYSQFDFYYHQRFGHLKEFGKLTFENLTEKY
FT RRNNLKPFQLFFVYEQMYQLMQTISPSLNLNPNLELVDFEEYGDGANLEDFDINDVSAC
FT RLIDYPLGDALPLNTLEVFPPNLFEVSEHIRMMFDSRFLSPYAMYPLPLVPGGHDSLVQ
FT TDASRLSDFRKNTAQRKVFKALQKQVLNSKIVFRKYVEPNLIKSSIPSADFLFWVVYCV
FT ASPPKFTVSSQGDLDVPPITSDISNLVYTSPNTSSFKLLSLFFQFLHEKTFLQLNQPMS
FT IVFLGAKSEPVANMLFNLSHGKWSVQRFGNDAEWPGKKADVLSINLKNVYDIVISDMDQ
FT SIGANVNSITANTLKQLRVCLEAFSKRMIFKLQYCLFHTLSSITAMLREYGAEIAHSGQ
FT FIKLKITRHAWSKVGSLEVFLIIDKVRTEETIPNDNELMKVVNTLGLSEPNQVFFTYMG
FT TPRRYTLNDLNCKIFSVDITSEEMTNICSIFLNLSQCVSYGSLLHDKEHLNLTFFGTTN
FT IQRIGLFMRNKQVYKALAITGNDHKPEGVFTPSTDFVIPGVREVLVLADAQRMVGWKML
FT KALHFDKGALDLNSTAYDIGCRDYECAYMTVMDENTIIRYVGYDRASVLDVKRGITIVK
FT AEVNREKLIELCGLGHVFAFNSYYMGFESRDELEQELNYIADHLVIKGFFFISFYAMHD
FT DLKPILRHHGFIDITSADVAANKFTFGRYHAVATVSVDFVEEWKRKMMNKYDVYQIFLS
FT ANDVSFSCIMHGYSVNLDSMYFAPIYNLVSPCFLIHPKK"
FT 3'UTR 3456. .3572
XX
SQ Sequence 3572 BP; 1101 A; 590 C; 632 G; 1249 T; 0 other;
AJ293984 Length: 3572 April 1, 2003 09:30 Type: N Check: 3749 ..
1 aagttttttt caggatgttg aaagtaaacg tgcaggctct catctatcct
51 ttcagtggac aaatcacaga cattcgaaga aatcaactca ttccaacagc
101 caaattcaaa catactgtct tacatcaacc aatttttatc actaaactaa
151 agaataaaac gtcaccaccc gacccctcaa aatccaaaaa tactttaaaa
201 gtaaatccag tatggtcaaa tgcttttttt gattggaatt cagctttaat
251 caatccatgg acagttcttc cctcttcaac cggctctggc tcaatgtcaa
301 taccatcttc taaaaatgca aactctgata atgctgtttt aaagaatgca
351 gaattcatta acgaaagact tccttcatac ataaaattgc tttttgatag
401 tcttgatctt aaaggtaatg gctatgttaa tcaatttggt ttttgggcat
451 tattatattt ggattacagt ctacattgtc ttgttcccct cgagtattat
501 cgacaaatgt taaatttaag aactaaagaa aatgtggtat ttctagatac
551 ctatgatgaa gttgattatg ctatttctta cctttcccgc tttcccaagt
601 tattgtatat taatggtcat ggaagaaaat ttattaaatt gccgagtttt
651 ggaaaattag gatttacttt tgaaaaagat aatatcattg gaaatatagg
701 taatgacttg caatattgga cgttgtggcc tttacataat gattacactc
751 aagcagatac taatcgtcct aatcatgcta atattctcag aaacctaagt
801 cattttgaca atgagttagt tagtattcat tattacccta cttttttcta
851 cgaacattat ttatattttg aaacagtgca agaattgata aaacatcaaa
901 tttataatgt tattcgaact tatcgtgctc agttaaagtt acaagataat
951 cttggtacca atagattgga aagaagaggt tattatttaa cagcgtatag
1001 tcctttttat gaatcattca ctgatgcagt agtcgcagag ttcggagaat
1051 tatatttata ccttcagtta tttggatcac tgccttttac tagcggtaat
1101 ttaaatgtca ttcccaatac ttactctcag tttgattttt attatcatca
1151 aagattcgga catttaaaag aatttggaaa acttacattc gaaaacttaa
1201 ccgagaaata tcgtcgtaat aatttgaaac cttttcagtt atttttcgtt
1251 tatgaacaaa tgtatcaatt aatgcaaacc atttcaccaa gcttgaatct
1301 taaccccaac cttgaactcg tagactttga agaatacggt gatggagcta
1351 atttggaaga ttttgacatt aacgatgtta gtgcatgtcg attgatagat
1401 tatcctttag gtgacgcttt accattaaat acgttagaag tgtttccccc
1451 taatttgttt gaagtttcag aacacatcag aatgatgttt gatagtagat
1501 ttttaagtcc atatgctatg tatcccctac ctttagttcc tggtggccat
1551 gattctttag ttcaaaccga tgcaagcaga ttatctgatt ttcgaaagaa
1601 tactgctcaa cgtaaagtgt ttaaagcgtt acaaaaacag gtgttgaatt
1651 ccaaaattgt cttcagaaaa tatgtcgaac ctaatcttat taaaagttct
1701 attccttcag cagattttct tttttgggtt gtttattgtg tcgcttctcc
1751 tcctaaattc acagtcagct cacaaggtga tctggatgtg cctcctatta
1801 cttcagatat ttcaaatttg gtttacactt cacccaatac ttcatctttc
1851 aaattgttga gtctcttctt ccagtttctt catgagaaga cttttctcca
1901 actcaatcag ccaatgagca tagtttttct tggtgctaaa agcgaaccag
1951 tggcaaatat gttatttaac ttgtctcatg gtaaatggag tgtacagcgt
2001 tttggtaatg atgcagaatg gcctggtaag aaagcagatg ttctatctat
2051 taatttgaaa aacgtttacg atatcgtaat ttcagacatg gaccaaagta
2101 ttggagcgaa tgttaatagc ataacggcta acactttaaa gcagttaaga
2151 gtatgtttag aagcgttcag taagagaatg atttttaaat tacaatattg
2201 tttatttcat actttaagtt cgataaccgc catgttacgt gaatatggtg
2251 ctgaaatcgc tcattcaggt caattcatca aattaaaaat tactcgccat
2301 gcttggtcta aggttggaag tttagaagtg tttttaatta ttgataaagt
2351 gcggactgaa gagactattc ctaatgataa tgaattaatg aaggttgtga
2401 atactctagg attgagcgaa cctaatcaag tgtttttcac ttatatgggt
2451 actcctcgaa gatatacttt gaatgactta aattgtaaga tttttagtgt
2501 tgacatcact tccgaagaga tgactaatat ttgttctatt ttcttaaatt
2551 tatctcagtg tgttagttac ggttctttat tgcatgataa agaacattta
2601 aatctgacat tctttggcac cacgaatatt caaagaattg gccttttcat
2651 gcgtaataag caagtctaca aagcactggc tattactggt aatgatcata
2701 aacctgaagg agttttcacc cctagtactg attttgtaat acctggagtt
2751 agagaagttt tagttttagc agacgcgcaa cgcatggtgg gttggaaaat
2801 gttgaaagca ttacattttg ataaaggcgc ccttgattta aattcaaccg
2851 cttatgatat tggttgtcgt gattatgaat gtgcttacat gaccgttatg
2901 gacgaaaaca caataatacg ttatgttggg tatgacagag cttcagtatt
2951 agacgtcaaa cgaggtatta caatagtaaa agcggaggtt aatagggaga
3001 aattaatcga attatgcggt ttaggtcatg tctttgcttt taattcttat
3051 tatatgggat tcgagtcaag agatgagctt gagcaggaat tgaattatat
3101 cgctgatcat ttagttataa aaggtttctt ttttattagt ttttacgcta
3151 tgcacgatga cttaaaaccg atcttgagac atcatggatt cattgatatc
3201 actagtgctg acgttgctgc taataaattt acttttggaa ggtatcacgc
3251 tgtcgctaca gtgagcgttg atttcgttga agagtggaaa agaaaaatga
3301 tgaataagta cgatgtttat caaatatttt tatccgctaa tgatgtcagt
3351 ttcagttgta tcatgcatgg ttattccgtc aatctggaca gtatgtattt
3401 cgccccaatt tacaatcttg tgtctccttg ttttctaatt caccctaaga
3451 aatgattctt cgactgtttg tgcatgtgtt ttggaaggat gttggaaact
3501 gtcacgtgag ctctccccta gccttttgac ataccgtgtt gtggcggctc
3551 aaacctgaaa acagctattg tc