Sequence of DPV Carnation mottle virus

Carnation mottle virus p7 gene, p9 gene and cp gene, genomic RNA, isolate sp-2

ACC No: AJ309504

Dated: 2005-04-15 | Length: 1382 | CRC: -1798268865

                !!NA_SEQUENCE 1.0
ID   CMO309504  standard; genomic RNA; VRL; 1382 BP.
XX
AC   AJ309504;
XX
SV   AJ309504.1
XX
DT   30-JAN-2001 (Rel. 66, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Carnation mottle virus p7 gene, p9 gene and cp gene, genomic RNA, isolate
DE   sp-2
XX
KW   coat protein; cp gene; movement protein; p7 gene; P9 gene.
XX
OS   Carnation mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC   Carmovirus.
XX
RN   [1]
RP   1-1382
RA   Pallas V.;
RT   ;
RL   Submitted (29-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL   Pallas V., Biologia del estres, Instituto de Biologia Molecular y Celular
RL   de Plantas-CSIC, Avenida de los Naranjos s/n, 46022 Valencia, SPAIN.
XX
RN   [4]
RX   DOI; 10.1007/s007050170051.
RX   MEDLINE; 21578632.
RX   PUBMED; 11722023.
RA   Canizares M.C., Marcos J.F., Pallas V.;
RT   "Molecular varaibility of twenty-one geographically distinct isolates of
RT   Carnation mottle virus (CarMV) and phylogenetic relationships within the
RT   Tombusviridae family";
RL   Arch. Virol. 146(10):2039-2051(2001).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1382
FT                   /country="Spain"
FT                   /db_xref="taxon:11986"
FT                   /mol_type="genomic RNA"
FT                   /organism="Carnation mottle virus"
FT                   /isolate="sp-2"
FT                   /variety="93MR9"
FT   CDS             1. .186
FT                   /db_xref="GOA:Q99A01"
FT                   /db_xref="InterPro:IPR007982"
FT                   /db_xref="UniProt/TrEMBL:Q99A01"
FT                   /note="The central region contains an RNA-binding motif"
FT                   /gene="p7"
FT                   /product="movement protein"
FT                   /protein_id="CAC27489.1"
FT                   /translation="MDIEPEVPVVEKQTLVGNRGKQKTRRSVAKDAIRKPASDSTNGGN
FT                   WVNVADKIEVHIHFNF"
FT   CDS             92. .346
FT                   /db_xref="UniProt/TrEMBL:Q98VK4"
FT                   /gene="p9"
FT                   /product="movement protein"
FT                   /protein_id="CAC27490.1"
FT                   /translation="MPSANLHLIVLTGVIGLMLLIRLRCTFTSTFSLPPLVTLNQIIAL
FT                   SFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK"
FT   CDS             336. .1382
FT                   /db_xref="GOA:Q99A00"
FT                   /db_xref="HSSP:2TBV"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="UniProt/TrEMBL:Q99A00"
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /protein_id="CAC27491.1"
FT                   /translation="MENKGEKIAMNPTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE
FT                   MLAGYTPAILAFTPRRPRMTNPPPRTSRNSPGQAGKSMTMSKTELLSTVKGTTGVIPSF
FT                   EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYPPACSFETNGRVALGFNDDASDTP
FT                   PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSTSDDAKLVDFGRIVLSTYGFD
FT                   KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK
FT                   WCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAICELVTQMEGQILKITKTSAEQP
FT                   LQWVVYRM"
XX
SQ   Sequence 1382 BP; 404 A; 320 C; 355 G; 303 T; 0 other;

 AJ309504  Length: 1382  April 19, 2005 08:56  Type: N  Check: 2344  ..

       1  atggatattg aaccggaagt accagtagtt gaaaagcaaa cgctcgttgg
      51  aaatagagga aaacagaaga cacgtagatc ggtggccaag gatgccatcc
     101  gcaaacctgc atctgatagt actaacgggg gtaattgggt taatgttgct
     151  gataagattg aggtgcacat tcacttcaac ttttagtttg cccccactgg
     201  taactttaaa tcagataata gcgttgtcat tttgtggtct tctattaaac
     251  agcatctctc gggcagaaag agcttgctat tacaactact ctgttgatag
     301  ttctaaacaa caacacattt caataagtac accaaatgga aaataaagga
     351  gaaaagatcg cgatgaatcc cactgtgcaa acgttggcgc agaaggggga
     401  caagttagcc gtaaagttgg tgacacgagg gtgggcctct ctgagtacga
     451  accagaagag gagagctgaa atgcttgctg gatacactcc agcgatccta
     501  gccttcacac cccgacgacc acggatgacg aaccctcctc caagaaccag
     551  taggaattca ccaggacaag ctggaaagtc catgacgatg agtaagaccg
     601  aactactaag caccgtcaaa ggtaccacgg gtgttatccc aagctttgaa
     651  gactgggtcg tttccccccg aaacgtagcc gtcttccctc aactctcgct
     701  gctggcgacg aacttcaaca agtaccgcat tactgcgctc actgtgaagt
     751  acccacccgc gtgcagcttc gagaccaatg ggagggtggc tctgggattc
     801  aacgatgacg cttcggacac accaccaacc accaaggttg ggttttatga
     851  tctgggcaaa catgtggaaa ctgctgcaca gacagctaaa gatctagtga
     901  taccagtaga cggcaaaacc cggttcatca gggactcgac tagtgatgat
     951  gccaaactag tcgattttgg gcgaatagtc ttgtcaacat acgggtttga
    1001  caaggctgac actgtggtgg gcgaattgtt catacagtac acgatcgtgc
    1051  tgagtgaccc aaccaagacg gccaaaattt cacaggcgag caacgataag
    1101  gtgtcggacg gaccaacgta tgtggtccct tcggttaatg gcaacgagct
    1151  acaactaaga gtggtagccg ctgggaagtg gtgcattata gtgcggggta
    1201  cggttgaggg tggcttcacc aaacccacac ttattgggcc cggaatcagc
    1251  ggtgacgtgg actatgaaag tgccagacct atcgccattt gtgagttggt
    1301  gacacaaatg gagggccaga tattgaaaat caccaagacc tcagcagaac
    1351  aaccactcca atgggttgtt tataggatgt ga