Sequence of DPV Wheat dwarf virus
Wheat dwarf virus - [Enkoping1] complete genome, isolate Enkoping1
ACC No: AJ311031
Dated: 2006-11-14 | Length: 2750 | CRC: -570082596
ID AJ311031; SV 1; circular; genomic DNA; STD; VRL; 2750 BP.
XX
AC AJ311031;
XX
DT 19-DEC-2001 (Rel. 70, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 5)
XX
DE Wheat dwarf virus - [Enkoping1] complete genome, isolate Enkoping1
XX
KW coat protein; movement protein; rep gene; repA gene;
KW replication-associated protein; Replication-associated protein A; V1 gene;
KW V2 gene.
XX
OS Wheat dwarf virus - [Enkoping1]
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN [1]
RP 1-2750
RA Kvarnheden A.;
RT ;
RL Submitted (17-APR-2001) to the EMBL/GenBank/DDBJ databases.
RL Kvarnheden A., Dept. of Plant Biology, Swedish University of Agricultural
RL Sciences, P.O. Box 7080, SE-750 07 Uppsala, SWEDEN.
XX
RN [2]
RX DOI; 10.1007/s705-002-8313-x.
RX PUBMED; 11858231.
RA Kvarnheden A., Lindblad M., Lindsten K., Valkonen J.P.T.;
RT "Genetic diversity of Wheat dwarf virus";
RL Arch. Virol. 147(1):205-216(2002).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2750
FT /organism="Wheat dwarf virus - [Enkoping1]"
FT /specific_host="Triticum aestivum"
FT /strain="Wheat"
FT /isolate="Enkoping1"
FT /mol_type="genomic DNA"
FT /country="Sweden"
FT /virion
FT /db_xref="taxon:290587"
FT misc_feature 1. .170
FT /note="long intergenic region"
FT CDS 171. .443
FT /gene="v1"
FT /product="Movement protein"
FT /db_xref="InterPro:IPR002621"
FT /db_xref="UniProtKB/TrEMBL:Q8UYL2"
FT /protein_id="CAC84658.1"
FT /translation="MEQAIAPPLPIRDYQYQTPSNPGSSDYAWRTFVFVTFGLLIAVGV
FT AWLAYTLFLKDLILVCKAKKQRRTEEIGYGNTPARLNGDQQGLPR"
FT CDS 415. .1197
FT /gene="v2"
FT /product="Coat protein"
FT /db_xref="GOA:Q8UYL1"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="UniProtKB/TrEMBL:Q8UYL1"
FT /protein_id="CAC84659.1"
FT /translation="MVTNKDSRGKGKRKLEEGESSGRWKGAVYKRRKQTYKVVPVKPPA
FT LCVFRYNWLNSDRTNIVVGNTPRVDLITCFAQGKADNNRHTNQTVLYKFNIQGTCYMSD
FT ASAPFIGPVRLYHWLVYDAEPKQAMPDATDIFTMPWNLLPSTWTVQRAWSHRFVVKRKW
FT TVNLVTDGRKVGSKTVDQRYNWVVGKNIVDANKFFKGLRVTTEWMNTGDGKIGDIKKGA
FT LYLISSTRGGVTGDSASTAFDVVCAYTHACYFKAIGIQ"
FT misc_feature 1198. .1369
FT /note="Short intergenic region"
FT mRNA join(complement(1882. .2511),complement(1370. .1795))
FT /gene="rep"
FT CDS join(complement(1882. .2511),complement(1370. .1795))
FT /gene="rep"
FT /product="Replication-associated protein"
FT /db_xref="GOA:Q8UYL0"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q8UYL0"
FT /protein_id="CAC84660.1"
FT /translation="MASSSAPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLY
FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVR
FT DYITKEVDSDANTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEW
FT SIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSESPGRHKSIYIC
FT GPTRTGKTSWARSLGTHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF
FT TVNPKYGKRKVIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVVHYMYEGESFINYS
FT FASGEDVTASQ"
FT exon complement(1370. .1795)
FT /gene="rep"
FT /number=2
FT CDS complement(1717. .2511)
FT /gene="repA"
FT /product="Replication-associated protein A"
FT /db_xref="GOA:Q8UYK9"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q8UYK9"
FT /protein_id="CAC84661.1"
FT /translation="MASSSAPRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLY
FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVR
FT DYITKEVDSDANTAEWGTFVAVSTPGRKDRDADMKQIIESSSSREEFLSMVCNRFPFEW
FT SIRLKDFEYTARHLFPDPVATYTPEFPTESLICHETIESWKNEHLYSVSLESYIICTST
FT PADQAQSDLEWMDDYSRSHRGGISPSTSAGQPEQERLPGQGL"
FT intron complement(1796. .1881)
FT /gene="rep"
FT /number=1
FT exon complement(1882. .2511)
FT /gene="rep"
FT /number=1
FT misc_feature 2512. .2750
FT /note="Long intergenic region"
XX
SQ Sequence 2750 BP; 712 A; 596 C; 733 G; 709 T; 0 other;
aj311031 Length: 2750 14-NOV-2006 Type: N Check: 440 ..
1 accccgcgtg gtggcccccg acgcgcactc ggcttttcgt gagtgcgcgg
51 aggcttttgg accacatctt ttctgatcac tttcgtggaa gatgttgatt
101 tatcacactt ttgacttgga aatctgtgcc atgccttagc ttataaggaa
151 gtgcgcggta gcccatctcg atggagcagg caatagcccc cccgcttcct
201 atacgggact atcaatacca gaccccttcc aatcccggtt cctccgacta
251 cgcctggcga acatttgtgt tcgttacctt cggtttgtta atagccgtag
301 gcgttgcttg gcttgcttac actctgtttc tgaaagattt aattttagtg
351 tgtaaggcga agaagcaaag gaggaccgag gaaattggtt acgggaatac
401 accggccaga ttaaatggtg accaacaagg actcccgagg taaggggaaa
451 cgtaagctcg aagagggaga atccagcgga aggtggaagg gggctgtgta
501 taagcggcgt aaacagacgt ataaggtagt acctgtgaag cccccagctc
551 tctgcgtatt ccgctacaac tggttgaata gcgacaggac caatattgtt
601 gtgggtaata caccccgggt cgatctgatt acctgttttg ctcagggtaa
651 ggccgataat aatcggcata caaatcagac cgtcctatac aaatttaaca
701 tacagggtac ctgctatatg tccgatgcat cagctccgtt catcggtcca
751 gtccgcctct accactggtt agtctatgat gcagagccga aacaggcaat
801 gccagacgcc actgacatct ttacgatgcc ttggaatctg ctgccgagta
851 cgtggactgt gcaacgtgct tggtcgcatc gattcgtggt gaaaaggaag
901 tggaccgtga accttgttac tgatggacgg aaggtcgggt ctaagaccgt
951 tgaccaacgc tacaactggg tagtcggcaa gaatatcgtg gacgcgaaca
1001 agttcttcaa aggtttgcgt gtcacgacgg agtggatgaa cacgggtgac
1051 ggcaagatag gcgacattaa gaagggagca ctgtatctca taagcagtac
1101 tcgtggtggt gttactggtg acagtgcctc tacggcgttt gatgttgtat
1151 gtgcctatac gcacgcgtgt tatttcaaag ccatcggcat tcagtaataa
1201 aataatattt tatttatctc atgtcattcg attacagagg ctcggctacg
1251 agcaaagaca aaccaaatta taacaaaaaa caacccttac acaatgacat
1301 cggaaaacga aatacaacac cctgagatat tacatttata gaaactgtac
1351 gccgtccgcg ctaggacagt cactgcgaag cagtgacatc ttcgccggag
1401 gcgaacgagt agttgatgaa agactcgcct tcatacatgt agtgaacaac
1451 agcgttagag tacatgtaat ccgactgttc gggagtcata tccttgagcc
1501 aatcttcgtc tggattaact aaaatgatgc aaggtattcc accccgtatg
1551 acttttcgct taccatattt tggattgacc gtgaagtcac gctgagcccc
1601 gacgaagcac ttccagttcg gtgtgaactt gaatggaatg tcgtcgatga
1651 tattatactt ggcgttgacg tcatatgttg tgaaatcaac tagactgtta
1701 taataattgt gtgtccctag agaccttgcc caggaagtct ttcctgttct
1751 ggttggcccg cagatgtaga tggacttatg cctccccggt gactcctgga
1801 ataatcgtcc atccactcta agtcagattg cgcttgatcc gcaggagtgg
1851 aagtacaaat gatataggat tcgaggctta cggagtagag atgttcattt
1901 ttccagcttt caatggtctc atggcaaatg agtgattcgg ttggaaactc
1951 aggtgtgtaa gtggcaactg ggtcaggaaa tagatggcgt gccgtgtact
2001 cgaagtcttt gagacggata gaccattcaa acggaaaacg attgcaaacc
2051 atgctgagga attcctcgcg agaggaacta gattcaatga tctgtttcat
2101 atccgcatca cggtctttac gacctggagt tgaaactgcc acgaatgttc
2151 cccactcagc tgtgtttgca tcggagtcaa cctccttcgt gatgtaatca
2201 cgaacttggt tgcagtcttt ggcagcttgt atatttggat ggaatatgga
2251 gaatggagat gtatccatac ggaggtttaa ggcattggga ttggtgatgg
2301 aagcacgaag cttgttctgc acgagaacgt gcagatgtgg tgatccatct
2351 tcgtggagct ctctaacagc agcgatgtag aggggctcat atttgttcaa
2401 gagagtgcga agtgaatcca aggcgtactg tggctcaagg gtacattgag
2451 gatatgttag aaagaggtac ttggaataga cacggaacct gggtgcagat
2501 gaagaggcca tggtagtgaa cagaagtccg gcaggtcctt agcgaaaaaa
2551 cggggtgtgc cagaaaactc tatgctctac cctgcgtgga ggtgtgaatt
2601 ctgcacactg caaatgcaat gtgtccaatg ctttatatag ggcaggtttt
2651 ggcgggagaa cagggccctt gtgttcccac gggagcgtag cgtatcgtgt
2701 gggccctgtt cggtgtgtgg tcggggggcc tccacgcggg ttataatatt