Sequence of DPV Mungbean yellow mosaic India virus

Legume yellow mosaic virus complete genomic DNA-A, isolate 14

ACC No: AJ512495

Dated: 2005-04-15 | Length: 2746 | CRC: -1079983779

                !!NA_SEQUENCE 1.0
ID   LYE512495  standard; circular genomic DNA; VRL; 2746 BP.
XX
AC   AJ512495;
XX
SV   AJ512495.1
XX
DT   15-JAN-2003 (Rel. 74, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Legume yellow mosaic virus complete genomic DNA-A, isolate 14
XX
KW   AC2 gene; AC3 gene; AC4 gene; AC4 protein; AV1 gene; AV2 gene;
KW   coat protein; complete genomic DNA-A; pre-coat protein; Rep gene;
KW   replication associated protein; replication enhancer protein;
KW   transcriptional activator protein.
XX
OS   Legume yellow mosaic virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2746
RA   Robinson D.J.;
RT   ;
RL   Submitted (15-OCT-2002) to the EMBL/GenBank/DDBJ databases.
RL   Robinson D.J., Host-Parasite Co-evolution, Scottish Crop Research
RL   Institute, Invergowrie, Dundee, DD2 5DA, UNITED KINGDOM.
XX
RN   [2]
RA   Hameed S.;
RT   "Molecular diversity of begomoviruses of legumes and cucurbits in
RT   Pakistan";
RL   Thesis (1999), Department of Biological Sciences, University of Dundee,
RL   Dundee, United Kingdom.
XX
RN   [3]
RX   DOI; 10.1007/s00705-003-0256-9.
RX   PUBMED; 15045567.
RA   Hameed S., Robinson D.J.;
RT   "Begomoviruses from mungbeans in Pakistan: epitope profiles, DNA A
RT   sequences and phylogenetic relationships";
RL   Arch. Virol. 149(4):809-819(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2746
FT                   /country="Pakistan"
FT                   /db_xref="taxon:211101"
FT                   /mol_type="genomic DNA"
FT                   /virion
FT                   /organism="Legume yellow mosaic virus"
FT                   /isolate="14"
FT                   /specific_host="Vigna radiata"
FT   CDS             156. .497
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="UniProt/TrEMBL:Q80P67"
FT                   /transl_table=1
FT                   /gene="AV2"
FT                   /product="putative pre-coat protein"
FT                   /protein_id="CAD54702.1"
FT                   /translation="MWDPLLNDFPKSVHGFRCMLAIKYLQQVQENYPSNSVGYSYLTGL
FT                   IQVLRIRNHAKADLRYCLLYPDIECTEEIELRYPAHAPCLCGRCPYQHEKKALDQPPHV
FT                   EETSVLPTV"
FT   CDS             316. .1089
FT                   /db_xref="GOA:Q80P66"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProt/TrEMBL:Q80P66"
FT                   /transl_table=1
FT                   /gene="AV1"
FT                   /product="putative coat protein"
FT                   /protein_id="CAD54703.1"
FT                   /translation="MPKRTYDTAFSTPISNARRRLNFDTPLMLPASAGGVPTNMKRRRW
FT                   TNRPMWRKPRFYRLYRSPDVPRGCEGPCKVQSFEHRHDIAHTGKVICISDVTRGNGITH
FT                   RIGKRFCIKSVYITGKVWMDENIKSKNHTNTVMFKLCRDRRPFGTPMDFGQVFNMYDNE
FT                   PSTATVKNDLRDRYQVLRKFNATVTGGQYACKEQAMVNRFFKVNNYVVYNHQEAAKYEN
FT                   HTENALLLYMACTHASNPVYATLKIRIYFYDSILN"
FT   CDS             complement(1086. .1490)
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProt/TrEMBL:Q80P65"
FT                   /transl_table=1
FT                   /gene="AC3"
FT                   /product="putative replication enhancer protein"
FT                   /protein_id="CAD54704.1"
FT                   /translation="MDYRTGEYITAAQLRSGVYIWEVQNPLSFKIMHHSPIRAGSRMMV
FT                   TKLRIMFNHRLKKALGMHKCFLELKLYHYLTATSGMILSIFRNQLFRFLNNLGVISLAN
FT                   ILYFASDFLYNKLHLVEDVSFTHNVQYKLY"
FT   CDS             complement(1228. .1680)
FT                   /db_xref="GOA:Q80P64"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProt/TrEMBL:Q80P64"
FT                   /transl_table=1
FT                   /gene="AC2"
FT                   /product="putative transcriptional activator protein"
FT                   /protein_id="CAD54705.1"
FT                   /translation="MKRTMLRLNSGLQRMRNSTPSKNHCSPPSIKVQHRVAKKRAIRRS
FT                   RIDLTCGCSYYIHINCRNYGLSHRGVHHCSSTQEWRLYLGGAKSPLFQDHAPQSNSSRV
FT                   QNDGHQAAHNVQPQVEESTGDAQVLPGIEALPLFDGDFWDDLIDLP"
FT   CDS             complement(1538. .2626)
FT                   /db_xref="GOA:Q80P63"
FT                   /db_xref="HSSP:1L5I"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProt/TrEMBL:Q80P63"
FT                   /transl_table=1
FT                   /gene="Rep"
FT                   /product="putative replication associated protein"
FT                   /protein_id="CAD54706.1"
FT                   /translation="MPREGRFAINAKNYFLTYPKCPLTKEDALEQLLALSTPVNKKFIR
FT                   ICRELHEDGQPHLHVLLQFEGKQQTKNQRFFDLHSRCRSAYYHPNIQAAKSCSDVKSYM
FT                   EKDGDILDHGTFQIDGRSARGGKQSANDAYAEALNSGSKLEALLILKEKAPKDFILQFH
FT                   NLNCNLSRIFTEPVQAYQSPFTLESFNKVPSYISSWAERNVRDPAARPDRPISIVIEGD
FT                   SRTGKTMWARAIGPHNYLCGHLDLNDKTYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNVKYGKPTKIKGGIPTIFLCNPGPKSSYKEYLDEENNAALKQWASKNAEFYTLKEPL
FT                   FSSVNQGSTQGRQEESNSTISN"
FT   CDS             complement(2176. .2475)
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProt/TrEMBL:Q805N0"
FT                   /transl_table=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /protein_id="CAD54707.1"
FT                   /translation="MKMDSLISMFCFSSKGNNKRKTKGSSTSIPDADRHITIRTFRQLK
FT                   AAQMLNHTWRKTETSLIMELSKSMADQLEEVNNLPTTHTPRHSTLDQSWRPSLY"
XX
SQ   Sequence 2746 BP; 729 A; 578 C; 616 G; 823 T; 0 other;

 AJ512495  Length: 2746  April 19, 2005 08:55  Type: N  Check: 4441  ..

       1  acctgagtgc cccgcgaccg gtgtattggg gttgctttag cttttttgct
      51  ttttgggtac ccttatcttt agtcgttcaa tcagaagcgc tcctcagcgc
     101  tatgttaatt caaatttgaa ttataaagca tgtgcacact ctgaacccac
     151  taacaatgtg ggatccattg ttgaacgact ttcccaaatc agtgcatgga
     201  ttccggtgca tgttggcaat aaagtatttg cagcaagttc aagagaatta
     251  tccctctaat tctgttggtt attcgtacct tacagggtta attcaggtat
     301  tgcgcatccg gaatcatgcc aaagcggacc tacgatactg ccttctctac
     351  cccgatatcg aatgcacgga ggagattgaa cttcgatacc ccgctcatgc
     401  tccctgcctc tgcgggaggt gtccctacca acatgaaaag aaggcgttgg
     451  accaaccgcc ccatgtggag gaaacctcgg ttttaccgac tgtataggtc
     501  ccctgatgtc cctcgtggtt gtgagggacc atgtaaagtt caatcatttg
     551  agcataggca tgatattgcc cacacaggca aagtgatttg catatcggac
     601  gtgactagag gtaatggaat tacacatcgt attggcaaac gtttttgcat
     651  caagtccgtg tacattactg ggaaggtttg gatggacgaa aacattaagt
     701  ccaaaaatca cacgaacact gtgatgttca agttatgtcg tgacagacga
     751  ccatttggta cacccatgga ttttggtcaa gtgttcaaca tgtatgacaa
     801  cgagcccagt acagctactg tgaagaacga tctgcgtgat cgttatcaag
     851  tattgcgaaa gtttaatgcc accgttactg gtggccaata tgcttgtaag
     901  gaacaagcca tggtgaatcg ttttttcaaa gttaataatt atgttgttta
     951  taaccaccag gaggcagcga agtatgagaa ccatactgag aacgcattat
    1001  tattgtatat ggcatgtact catgcctcaa atcctgtgta tgcaactctt
    1051  aaaattcgga tctattttta cgattcgata ttgaattaat aaagtttgta
    1101  ttgaacatta tgcgtaaagc ttacatcctc caccagatgg agtttattgt
    1151  acaggaaatc cgacgcgaaa tataaaatat ttgctaagct aatgacccct
    1201  aaattattta gaaacctaaa taattggtta cggaagatcg ataagatcat
    1251  cccagaagtc gccgtcaaat agtggtagag cttcaattcc aggaagcact
    1301  tgtgcatccc cagtgctttc ttcaacctgt ggttgaacat tatgcgcagc
    1351  ttggtgacca tcattctgga ccctgctcga attggactgt ggtgcatgat
    1401  cttgaaagag aggggatttt gcacctccca gatatagacg ccactcctga
    1451  gttgagctgc agtgatgtac tcccctgtgc gataatccat agttacggca
    1501  gttgatatgg atgtaatagc tacacccaca ggttagatca attcgagatc
    1551  gtcgaattgc tctcttcttg gcgaccctgt gttgaacctt gattgacgga
    1601  ggagaacagt ggttctttga gggtgtagaa ttccgcattc tttgaagccc
    1651  actgtttaag cgcagcattg ttctcttcat ccaagtactc tttataggag
    1701  gacttgggac cagggttaca cagaaagatg gtggggatac cacctttaat
    1751  tttagtgggc ttcccgtact tgacgttaga ctgccagtct ctttgcgcgc
    1801  ccatgaattc tttgaaatgt ttcaagtaat gtggatcaac gtcatcgatg
    1851  acgttgtacc aagcctcgtt agagtatgtt ttgtcgttta gatccaaatg
    1901  gccgcaaaga taattatgag gacctatggc acgtgcccac atggttttac
    1951  ctgtgcgact atctccttca ataacaatac taataggtct atctggccgc
    2001  gcagcgggat ctctcacatt tctttcagcc caagaagaaa tgtagcttgg
    2051  aaccttgtta aatgactcca gtgtaaaagg cgactgatat gcctgtacag
    2101  gctctgtgaa tatccgagac aaattacaat ttaagttatg aaattgtaaa
    2151  ataaaatcct taggagcctt ttcctttaat ataaggaggg cctccaactt
    2201  tgatccagag ttgagtgcct cggcgtatgc gtcgttggca gattgtttac
    2251  ctcctctagc tgatcggcca tcgatttgga aagttccatg atcaaggatg
    2301  tctccgtctt tctccatgta tgatttaaca tctgagcagc ttttagctgc
    2351  ctgaatgttc ggatggtaat atgccgatct gcatctggaa tggaggtcga
    2401  agaacctttg gtttttcgtt tgttgtttcc cttcgaactg aagcagaaca
    2451  tggagatgag gctgtccatc ttcatggagt tctcgacaga tgcggatgaa
    2501  tttcttgtta actggtgttg acaaggctag aagttgctca agagcgtcct
    2551  cctttgtaag aggacatttg ggatatgtca agaaatagtt ttttgcgttt
    2601  atagcaaaac gaccttccct aggcatattt gaagtcgttt ttgtatcggt
    2651  gtacaccgat tacttctcta tccccctatc ggtgtatcgg tgtcttatat
    2701  atactagagc tactaaaagc ccataggggc actcagctat aatatt