Sequence of DPV Honeysuckle yellow vein virus
Honeysuckle yellow vein virus-[UK2], complete genome
ACC No: AJ543429
Dated: 2005-04-15 | Length: 2763 | CRC: 1489696448
!!NA_SEQUENCE 1.0
ID HYE543429 standard; circular genomic DNA; VRL; 2763 BP.
XX
AC AJ543429;
XX
SV AJ543429.1
XX
DT 04-FEB-2005 (Rel. 82, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Honeysuckle yellow vein virus-[UK2], complete genome
XX
KW AC1 gene; AC2 gene; AC2 protein; AC3 gene; AC3 protein; AC4 gene;
KW AC4 protein; AV1 gene; AV2 gene; AV2 protein; coat protein;
KW replication-associated protein.
XX
OS Honeysuckle yellow vein virus-[UK2]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2763
RA Stanley J.;
RT ;
RL Submitted (07-FEB-2003) to the EMBL/GenBank/DDBJ databases.
RL Stanley J., Department of Disease and Stress Biology, John Innes Centre,
RL Norwich Research Park, Colney, Norwich, NR4 7UH, UNITED KINGDOM.
XX
RN [2]
RA Stanley J.;
RT "Aetiology of honeysuckle yellow vein disease";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2763
FT /country="United Kingdom:Norfolk, Deopham"
FT /db_xref="taxon:240867"
FT /mol_type="genomic DNA"
FT /virion
FT /organism="Honeysuckle yellow vein virus-[UK2]"
FT /specific_host="Lonicera japonica var. aureoreticulata"
FT CDS 138. .488
FT /db_xref="UniProt/TrEMBL:Q5GR63"
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="CAD65892.1"
FT /translation="MWDPLVNDFPETVHGFRCMLAVKYLLLVESTYAPDTVGYDLVRDL
FT IGVVRAKNYVEASCRYRNFHTRLQGTAPSELRQPVCQPCECPHCPRHKQKEIMGSAAHV
FT SEVQDVQNVQKS"
FT CDS 298. .1071
FT /db_xref="GOA:Q5GR62"
FT /db_xref="UniProt/TrEMBL:Q5GR62"
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAD65893.1"
FT /translation="MSKRPADIGIFTPVSKVRRRLNFDSPYVSRASAPIALVTNKRRSW
FT AQRPMYRKSRMYRMYRSPDVPKGCEGPCKVQSFETKNDVGRSGTLLCVSDITRGNGLTH
FT RVGKRFCIKSVYIIGKIWMDDNIKTNNHTNNVLFWLVRDRRPGSTPYGFQEAFNMIQNE
FT PSTATIKQELRDRLQVLHRFSATVTGGQYVSKEQAIIKRFWKLNHHVTYNHQEQAKYEN
FT HTENALLLYMACTHASSPVYATLKIRVYFYDSVQN"
FT CDS complement(1068. .1472)
FT /db_xref="UniProt/TrEMBL:Q5GR61"
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="CAD65894.1"
FT /translation="MDSRTGDTITAAQARNGAYTWTVPNPLYFKITTHAQRPFNMDQDI
FT ITLQIRFNHNLRNQLHIHKCFLSFKIWTRLHPQTLHFLRVFRTQVLKYLDNLGVISINN
FT VIRAVDHVLYNVFEGTEYVQQFTDIKFKLY"
FT CDS complement(1213. .1620)
FT /db_xref="GOA:Q5GR60"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:Q5GR60"
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="CAD65895.1"
FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLNCGCSIYVAL
FT GCANHGFTHRGHHHCSSGKEWRVYLDSAQSPIFQNHDTRATAIQHGSGYNNFTDTIQPQ
FT PQESTAHTQVLPLFQDLDSLTSSDFAFLEGI"
FT CDS complement(1520. .2611)
FT /db_xref="GOA:Q5GR59"
FT /db_xref="UniProt/TrEMBL:Q5GR59"
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="CAD65896.1"
FT /translation="MPRAGRFSLKAKNYFLTYPQCSIDKEEALTQLQKLNTPTNIKFIR
FT ICRELHQNGSPHLHVLIQFEGKYNCTNQRFFDLVSPNRSAHFHPNIQAAKSSSDVKTYM
FT EKDGDIVDFGVFQVDGRSARGGCQSANDAYAEAISSGSKSSALCILREKAPKDFVLQFH
FT NLNSNLDRIFAPPLEEFVSPFLSSSFDQVPEQLEEWAAENVRDSAARPWRPISIVIEGD
FT SRTGKTMWARSLSPRHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRD
FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNAALKAWAIKNATFVTLYGP
FT LYSGTHQGATQIREEESTSPEED"
FT CDS complement(2161. .2454)
FT /db_xref="UniProt/TrEMBL:Q5GR58"
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAD65897.1"
FT /translation="MGALISTSSSSSRGNTTAQINDSSTSYPQTGQHISIQTFRRLKAR
FT QMSRPIWRKTETSLILECSRSMEDQLEEVASLPTTRMPRQSAQDLSHRHSVY"
XX
SQ Sequence 2763 BP; 712 A; 563 C; 654 G; 834 T; 0 other;
AJ543429 Length: 2763 April 19, 2005 08:53 Type: N Check: 7343 ..
1 accggatggc cgcccgaaat ttcgtggtgg tcccccccat gtcggccaat
51 gaataacgtg ccttgaatgt tagataagtg gaaagtgacg tttgcttttg
101 tctttatata cgtcagccct aattttaacg gtgtaagatg tgggatcctt
151 tagttaacga tttccctgaa accgttcacg gttttaggtg tatgttagcg
201 gttaagtacc tcctacttgt tgaatctacg tacgctccag atactgttgg
251 gtacgatctt gtacgcgatc ttattggagt tgttcgagct aagaactatg
301 tcgaagcgtc ctgcagatat aggaattttc acacccgtct ccaaggtacg
351 gcgccgtctg aacttcgaca gcccgtatgt cagccgtgcg agtgccccca
401 ttgccctcgt cacaaacaaa aggagatcat gggctcagcg gcccatgtat
451 cggaagtcca ggatgtacag aatgtacaga agtcctgatg ttcccaaggg
501 gtgtgaaggt ccgtgtaagg tacagtcatt tgagacgaag aatgatgttg
551 ggcgttctgg tactctgctt tgtgtttctg atatcacccg tggtaatgga
601 cttactcatc gtgttgggaa gagattttgt ataaaatctg tttatattat
651 tggtaaaatc tggatggatg acaatattaa gacgaacaat cacactaaca
701 acgtgttatt ctggttagtt agggatagac gtcctggttc aactccttat
751 ggattccaag aggcattcaa tatgattcaa aatgaaccca gtacagccac
801 tattaaacag gagttgagag atcgtttgca ggtgttacat aggttcagtg
851 cgactgttac aggtggacaa tatgtgtcca aggaacaagc tatcatcaag
901 aggttctgga agttgaatca tcatgtcact tacaatcatc aggagcaagc
951 taaatatgag aaccatactg aaaacgcttt gttattgtat atggcgtgta
1001 ctcatgccag tagtccagtg tatgccacat taaaaatcag agtgtatttc
1051 tacgattcag tacaaaatta ataaagctta aattttatat ctgtaaattg
1101 ttgtacatat tcagttcctt cgaatacatt atataataca tgatctactg
1151 ctctaattac attgttaatt gatattacac ccaaattatc taagtacttc
1201 aacacttgtg tcctaaatac cctcaagaaa tgcaaagtct gaggatgtaa
1251 gcgagtccaa atcttgaaag agaggaagca cttgtgtatg tgcagttgat
1301 tcctgaggtt gtggttgaat cgtatctgta aagttattat atcctgatcc
1351 atgttgaatg gccgttgcgc gtgtgtcgtg attttgaaat ataggggatt
1401 gggcactgtc caggtatacg cgccattcct tgcctgagct gcagtgatgg
1451 tgtcccctgt gcgtgaatcc atgatttgca caccccaatg cgacgtaaat
1501 agaacacccg cagttcagat caatcctcct ccggcgaggt gctctcctct
1551 tctctgatct gtgtcgcacc ttgatgggta cctgagtaga gtgggccgta
1601 gagggtgacg aaggttgcat ttttaattgc ccaggctttt agggcagcat
1651 tcttgtcctc gtctaaatac tcggtgtatg atgacgttgg gcctggattg
1701 cagaggaaga ttgttgggat acctccttta atttgaattg gtttcccgta
1751 cttggtgttg ctttgccagt ccctttgggc ccccatgaac tctttaaagt
1801 gctttagata gtggggatcc acgtcatcaa tgacgttgta ccaggcctca
1851 ttgctgtaaa ccttggggct taagtcaaga tggccgcaaa ggtagttatg
1901 acgtggactc aaagacctgg cccacatggt cttccctgtc ctgctatccc
1951 cttctatcac aatgctaatg ggcctccatg gccgcgcagc ggaatccctg
2001 acgttctcgg cagcccattc ctcaagttgc tctggaactt gatcaaatga
2051 agaagataaa aaaggagaaa caaattcctc caacggagga gcaaaaatcc
2101 tatctaaatt gctatttaaa ttatgaaact gtaaaacaaa atctttggga
2151 gctttctccc ttaatataca gagtgccgat gacttagatc ctgagctgat
2201 tgcctcggca tacgcgtcgt tggcagactg gcaacctcct ctagctgatc
2251 ttccatcgac ctggaacact ccaaaatcaa cgatgtctcc gtctttctcc
2301 atataggtct tgacatctga cgagctttta gccgcctgaa tgtttggatg
2351 gaaatgtgct gacctgtttg gggatacgag gtcgaagaat cgttgatttg
2401 tgcagttgta tttcccctcg aactggatga ggacgtggag atgagggctc
2451 ccattttgat gtagctctct gcagatcctt atgaatttaa tgttagttgg
2501 tgtgtttaat ttttgtaatt gggttagggc ttcttctttg tcgatggagc
2551 attgtgggta tgtgaggaaa taatttttgg cttttaaaga gaaacgccca
2601 gctctaggca tgttgacttg gtcaattggg gggcacttca aactcctgct
2651 gaatgggggg gcattggggg gcaatttata ttctgggggg catggcatta
2701 ttgtaattac ttcaacttta aattcaaaat tcaaattggt aaagcggcca
2751 tccgtataat att