Sequence of DPV Indian cassava mosaic virus
Indian cassava mosaic virus-[Ker2] DNA A, isolate Adivaram 2
ACC No: AJ575819
Dated: 2008-07-23 | Length: 2743 | CRC: 441443305
ID AJ575819; SV 1; circular; genomic DNA; STD; VRL; 2743 BP. XX AC AJ575819; XX DT 09-JUL-2003 (Rel. 76, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 8) XX DE Indian cassava mosaic virus-[Ker2] DNA A, isolate Adivaram 2 XX KW AC1 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene. XX OS Indian cassava mosaic virus-[Ker2] OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2743 RA Patil B.L.; RT ; RL Submitted (05-JUL-2003) to the EMBL/GenBank/DDBJ databases. RL Patil B.L., Plant Molecular Biology, University of Delhi South campus, RL University of Delhi, New Delhi-21, 110021, INDIA. XX RN [4] RX DOI; 10.1006/viro.2001.1251. RX PUBMED; 11853400. RA Saunders K., Salim N., Mali V.R., Malathi V.G., Markham P.G., Stanley J.; RT "Characterisation of Sri Lankan cassava mosaic virus and Indian cassava RT mosaic virus: evidence for acquisition of a DNA B component by a RT monopartite begomovirus"; RL Virology 293(1):63-74(2002). XX RN [6] RX DOI; 10.1007/s00705-005-0624-8. RX PUBMED; 16132175. RA Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.; RT "Biodiversity and recombination of cassava-infecting begomoviruses from RT southern India"; RL Arch. Virol. 151(1):55-69(2006). XX FH Key Location/Qualifiers FH FT source 1. .2743 FT /organism="Indian cassava mosaic virus-[Ker2]" FT /segment="A" FT /specific_host="Manihot esculenta" FT /isolate="Adivaram 2" FT /mol_type="genomic DNA" FT /country="India:Kerala state, Kozhikode district, Adivaram" FT /virion FT /db_xref="taxon:341699" FT CDS 135. .491 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q7TAT0" FT /protein_id="CAE05931.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHHFNSRLEGSSPSELRQPIQQPCGCPYCPRHKKTSLDKQAHES FT EAQVVQDVQKPRCT" FT CDS 295. .1065 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q7TAS9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q7TAS9" FT /protein_id="CAE05932.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1062. .1466) FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q7TAS8" FT /protein_id="CAE05933.1" FT /translation="MDSRTGELITAAQAMNGVFIWEVTNPLYFKIIQHDNRPFEMNMDI FT ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQTQTWRFLRVFKTQVLKYLDRLGIICINT FT VVHAVEHVLYNVIAGTDNVEQSNLIKFNVY" FT CDS complement(1552. .2610) FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q7TAS7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="UniProtKB/TrEMBL:Q7TAS7" FT /protein_id="CAE05934.1" FT /translation="MTPPKRFQINAKNYFLTYPRCSLSKEEALSQIRALQTPTNTKFIK FT ICRELHENGEPHLHVLIQFEGKYKCQNKRFFDLVSPSRSAHFHPNIQGAKSSSDVESYI FT DKDGDTLEWGTFQVDGRSARGGQQSANDAYAAALNSGSKSAALTILKELAPRDYLRDFH FT HINSNLDRIFTTPPPPYQNPFPLSSFDRVPEELDEWFHENVMDAAARPLRPKSIVIEGD FT SRTGKTMWARALGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKAWAIKNATFISLEEPL FT YSGPNQGHTQSS" FT variation 1517. .1525 FT /replace="" FT /citation=[4] FT CDS complement(2151. .2459) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q7TAS6" FT /protein_id="CAE05935.1" FT /translation="MRMGSLICTCSSNSKENTNARISDSSTWYPHPGQHISIRTFKELN FT PAPTSSPTSTKTAIHWNGEHSRSMEDLPEAVNNLQTTLTPQHLTAAVNQRLLRSLKN" XX SQ Sequence 2743 BP; 678 A; 584 C; 677 G; 804 T; 0 other; aj575819 Length: 2743 23-JUL-2008 Type: N Check: 4504 .. 1 accggatggc cgcgcccccc gctttgtggt ggaccccccc acgtggagat 51 gtcccccact cagaacgctc cctgaaagcc tgtatagctg tggtccctct 101 ttaagtactt gctcagcaag ttgtaatctg cacaatgtgg gaccctttgt 151 taaatgagtt ccctgaatcc gttcacggtt tccggtgtat gcttgccgtg 201 aaatatcttc agctagttga aggtacgtat tcccccgata cactcgggta 251 cgatttaatt agagatctga tctctgtcat cagggccaaa aattatgtcg 301 aagcgaccag cagatatcat catttcaact cccgcctcga aggttcgtcg 351 ccgtctgaac ttcgacagcc catacagcag ccgtgcggct gtccctactg 401 tccgcgtcac aaaaagacaa gcctggacaa acaggcccat gaatcggaag 451 cccaggtggt acaggatgtt caaaagccca gatgtaccta ggggatgtga 501 aggcccatgt aaggttcaat cgtttgagtc cagacacgat gtggtccata 551 taggtaaggt catgtgcatc tctgatgtca ctcgtggagt tgggcttact 601 catcgcgtgg gtaagaggtt ttgcgtcaag tccgtttaca tcctgggcaa 651 gatatggatg gatgaaaata tcaagacgaa gaatcacacg aacagtgtga 701 tgtttttcct cgtaagggat cgtaggcctg ttgataagcc ccaggatttt 751 ggtgaagtgt ttaatatgtt cgataatgaa cctagtacag ctacggtgaa 801 gaacatgcat cgtgatcgct atcaagtcct caggaagtgg agtgccacag 851 tcactggtgg tcagtatgcg agcaaggaac aggctttagt taggcgtttt 901 tttagagtta ataattatgt tgtgtataac cagcaagagg ctggcaagta 951 tgaaaatcat actgagaatg cattgatgct gtacatggcg tgtacgcatg 1001 cctctaatcc tgtatacgct acgctgaaga ttagaatcta cttctacgat 1051 tcggtcagca attaataaac attaaatttt attaaattag actgctcaac 1101 attgtcagtc ccagcgatta cattatacaa tacatgttct actgcgtgta 1151 caaccgtatt aatacatata atccctaatc tatcgaggta ttttaatact 1201 tgggtcttaa ataccctcaa gaaacgccag gtctgagtct gtaaggtcgt 1251 ccagaccttg aaatccatcc agcattgatg tagtcccaac gctttcctca 1301 ggttgtggtt gaagcgtatc tggatggtta ttatgtccat gttcatttcg 1351 aacggtctgt tgtcgtgttg aatgatcttg aaatagaggg gatttgttac 1401 ctcccagata aagacgccat tcatcgcctg agctgcagtg ataagttccc 1451 ctgtgcgtga atccatggtt gtggcagttg atgtgtacgt agtaagagca 1501 cccgcagttg agatctaaag atctaccctt ttacgccgga tggctttacg 1551 cttagctgct ctgtgtgtga ccttgattgg gacctgagta taatggttct 1601 tcgagggaga tgaaggtcgc atttttgata gcccaggctt tcaatgcgct 1651 gtttttgtct tcgtccaaga actctttata gctggaattg ggccctggat 1701 tgcagaggaa gatagtggga atacctcctt taatttgaac tggctttccg 1751 tacttggtgt ttgattgcca gtctttctgg gcccccatga attctttgaa 1801 gtgctttagg tagtggggat ctacgtcatc aatgacgttg taccacgcat 1851 cattgttgta tactttggga cttaagtcca gatgtccaca tagataatta 1901 tgtggaccca atgcacgggc ccacatagtt ttgcctgtcc gactatcgcc 1951 ctcgattacg attgacttag gtctcaaggg ccgcgcagcg gcatccatca 2001 cgttttcgtg aaaccactcg tcgagttctt ctggaactcg gtcaaatgaa 2051 gagaggggga aagggttctg atacggaggt ggtggtgttg taaaaatgcg 2101 atccaggttc gagttgatgt gatggaagtc cctgaggtaa tccctaggtg 2151 ctaattcttt aaggatcgta agagccgctg atttactgcc gctgttaagt 2201 gctgcggcgt aagcgtcgtt tgcagattgt tgaccgcctc tggcagatct 2251 tccatcgacc tggaatgttc cccattccaa tgtatcgccg tctttgtcga 2301 tgtaggactc gacgtcggag ctggatttag ctccttgaat gttcggatgg 2351 aaatgtgctg acctggatgg ggataccagg tcgaagaatc gcttattctg 2401 gcatttgtat tttccttcga attggatgag cacgtgcaga tgaggctccc 2451 cattctcatg gagctctcta cagatcttga tgaatttagt gttggtgggt 2501 gtttgaagcg ctcgaatttg tgaaagtgcc tcttctttag agagagagca 2551 cctaggataa gtgaggaaat agtttttggc gtttatttga aagcgcttag 2601 gaggtgtcat tctctctcct caatcggtac tcaaccattt agcccctata 2651 ttaggtactc aatatataca tgagtaccaa atggcatata tgtaaataag 2701 aggaatataa tttgaatttg aaagcggcca tccgtataat att