Sequence of DPV Indian cassava mosaic virus

Indian cassava mosaic virus-[Ker2] DNA A, isolate Adivaram 2

ACC No: AJ575819

Dated: 2008-07-23 | Length: 2743 | CRC: 441443305

                ID   AJ575819; SV 1; circular; genomic DNA; STD; VRL; 2743 BP.
XX
AC   AJ575819;
XX
DT   09-JUL-2003 (Rel. 76, Created)
DT   23-JUL-2008 (Rel. 96, Last updated, Version 8)
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DE   Indian cassava mosaic virus-[Ker2] DNA A, isolate Adivaram 2
XX
KW   AC1 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene.
XX
OS   Indian cassava mosaic virus-[Ker2]
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2743
RA   Patil B.L.;
RT   ;
RL   Submitted (05-JUL-2003) to the EMBL/GenBank/DDBJ databases.
RL   Patil B.L., Plant Molecular Biology, University of Delhi South campus,
RL   University of Delhi, New Delhi-21, 110021, INDIA.
XX
RN   [4]
RX   DOI; 10.1006/viro.2001.1251.
RX   PUBMED; 11853400.
RA   Saunders K., Salim N., Mali V.R., Malathi V.G., Markham P.G., Stanley J.;
RT   "Characterisation of Sri Lankan cassava mosaic virus and Indian cassava
RT   mosaic virus: evidence for acquisition of a DNA B component by a
RT   monopartite begomovirus";
RL   Virology 293(1):63-74(2002).
XX
RN   [6]
RX   DOI; 10.1007/s00705-005-0624-8.
RX   PUBMED; 16132175.
RA   Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.;
RT   "Biodiversity and recombination of cassava-infecting begomoviruses from
RT   southern India";
RL   Arch. Virol. 151(1):55-69(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2743
FT                   /organism="Indian cassava mosaic virus-[Ker2]"
FT                   /segment="A"
FT                   /specific_host="Manihot esculenta"
FT                   /isolate="Adivaram 2"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Kerala state, Kozhikode district, Adivaram"
FT                   /virion
FT                   /db_xref="taxon:341699"
FT   CDS             135. .491
FT                   /gene="AV2"
FT                   /product="AV2 protein"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TAT0"
FT                   /protein_id="CAE05931.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL
FT                   ISVIRAKNYVEATSRYHHFNSRLEGSSPSELRQPIQQPCGCPYCPRHKKTSLDKQAHES
FT                   EAQVVQDVQKPRCT"
FT   CDS             295. .1065
FT                   /gene="AV1"
FT                   /product="AV1 protein"
FT                   /db_xref="GOA:Q7TAS9"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TAS9"
FT                   /protein_id="CAE05932.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT
FT                   NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT                   VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT   CDS             complement(1062. .1466)
FT                   /gene="AC3"
FT                   /product="AC3 protein"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TAS8"
FT                   /protein_id="CAE05933.1"
FT                   /translation="MDSRTGELITAAQAMNGVFIWEVTNPLYFKIIQHDNRPFEMNMDI
FT                   ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQTQTWRFLRVFKTQVLKYLDRLGIICINT
FT                   VVHAVEHVLYNVIAGTDNVEQSNLIKFNVY"
FT   CDS             complement(1552. .2610)
FT                   /gene="AC1"
FT                   /product="AC1 protein"
FT                   /db_xref="GOA:Q7TAS7"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TAS7"
FT                   /protein_id="CAE05934.1"
FT                   /translation="MTPPKRFQINAKNYFLTYPRCSLSKEEALSQIRALQTPTNTKFIK
FT                   ICRELHENGEPHLHVLIQFEGKYKCQNKRFFDLVSPSRSAHFHPNIQGAKSSSDVESYI
FT                   DKDGDTLEWGTFQVDGRSARGGQQSANDAYAAALNSGSKSAALTILKELAPRDYLRDFH
FT                   HINSNLDRIFTTPPPPYQNPFPLSSFDRVPEELDEWFHENVMDAAARPLRPKSIVIEGD
FT                   SRTGKTMWARALGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQKDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKAWAIKNATFISLEEPL
FT                   YSGPNQGHTQSS"
FT   variation       1517. .1525
FT                   /replace=""
FT                   /citation=[4]
FT   CDS             complement(2151. .2459)
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TAS6"
FT                   /protein_id="CAE05935.1"
FT                   /translation="MRMGSLICTCSSNSKENTNARISDSSTWYPHPGQHISIRTFKELN
FT                   PAPTSSPTSTKTAIHWNGEHSRSMEDLPEAVNNLQTTLTPQHLTAAVNQRLLRSLKN"
XX
SQ   Sequence 2743 BP; 678 A; 584 C; 677 G; 804 T; 0 other;

aj575819 Length: 2743  23-JUL-2008  Type: N  Check: 4504  ..

       1  accggatggc cgcgcccccc gctttgtggt ggaccccccc acgtggagat
      51  gtcccccact cagaacgctc cctgaaagcc tgtatagctg tggtccctct
     101  ttaagtactt gctcagcaag ttgtaatctg cacaatgtgg gaccctttgt
     151  taaatgagtt ccctgaatcc gttcacggtt tccggtgtat gcttgccgtg
     201  aaatatcttc agctagttga aggtacgtat tcccccgata cactcgggta
     251  cgatttaatt agagatctga tctctgtcat cagggccaaa aattatgtcg
     301  aagcgaccag cagatatcat catttcaact cccgcctcga aggttcgtcg
     351  ccgtctgaac ttcgacagcc catacagcag ccgtgcggct gtccctactg
     401  tccgcgtcac aaaaagacaa gcctggacaa acaggcccat gaatcggaag
     451  cccaggtggt acaggatgtt caaaagccca gatgtaccta ggggatgtga
     501  aggcccatgt aaggttcaat cgtttgagtc cagacacgat gtggtccata
     551  taggtaaggt catgtgcatc tctgatgtca ctcgtggagt tgggcttact
     601  catcgcgtgg gtaagaggtt ttgcgtcaag tccgtttaca tcctgggcaa
     651  gatatggatg gatgaaaata tcaagacgaa gaatcacacg aacagtgtga
     701  tgtttttcct cgtaagggat cgtaggcctg ttgataagcc ccaggatttt
     751  ggtgaagtgt ttaatatgtt cgataatgaa cctagtacag ctacggtgaa
     801  gaacatgcat cgtgatcgct atcaagtcct caggaagtgg agtgccacag
     851  tcactggtgg tcagtatgcg agcaaggaac aggctttagt taggcgtttt
     901  tttagagtta ataattatgt tgtgtataac cagcaagagg ctggcaagta
     951  tgaaaatcat actgagaatg cattgatgct gtacatggcg tgtacgcatg
    1001  cctctaatcc tgtatacgct acgctgaaga ttagaatcta cttctacgat
    1051  tcggtcagca attaataaac attaaatttt attaaattag actgctcaac
    1101  attgtcagtc ccagcgatta cattatacaa tacatgttct actgcgtgta
    1151  caaccgtatt aatacatata atccctaatc tatcgaggta ttttaatact
    1201  tgggtcttaa ataccctcaa gaaacgccag gtctgagtct gtaaggtcgt
    1251  ccagaccttg aaatccatcc agcattgatg tagtcccaac gctttcctca
    1301  ggttgtggtt gaagcgtatc tggatggtta ttatgtccat gttcatttcg
    1351  aacggtctgt tgtcgtgttg aatgatcttg aaatagaggg gatttgttac
    1401  ctcccagata aagacgccat tcatcgcctg agctgcagtg ataagttccc
    1451  ctgtgcgtga atccatggtt gtggcagttg atgtgtacgt agtaagagca
    1501  cccgcagttg agatctaaag atctaccctt ttacgccgga tggctttacg
    1551  cttagctgct ctgtgtgtga ccttgattgg gacctgagta taatggttct
    1601  tcgagggaga tgaaggtcgc atttttgata gcccaggctt tcaatgcgct
    1651  gtttttgtct tcgtccaaga actctttata gctggaattg ggccctggat
    1701  tgcagaggaa gatagtggga atacctcctt taatttgaac tggctttccg
    1751  tacttggtgt ttgattgcca gtctttctgg gcccccatga attctttgaa
    1801  gtgctttagg tagtggggat ctacgtcatc aatgacgttg taccacgcat
    1851  cattgttgta tactttggga cttaagtcca gatgtccaca tagataatta
    1901  tgtggaccca atgcacgggc ccacatagtt ttgcctgtcc gactatcgcc
    1951  ctcgattacg attgacttag gtctcaaggg ccgcgcagcg gcatccatca
    2001  cgttttcgtg aaaccactcg tcgagttctt ctggaactcg gtcaaatgaa
    2051  gagaggggga aagggttctg atacggaggt ggtggtgttg taaaaatgcg
    2101  atccaggttc gagttgatgt gatggaagtc cctgaggtaa tccctaggtg
    2151  ctaattcttt aaggatcgta agagccgctg atttactgcc gctgttaagt
    2201  gctgcggcgt aagcgtcgtt tgcagattgt tgaccgcctc tggcagatct
    2251  tccatcgacc tggaatgttc cccattccaa tgtatcgccg tctttgtcga
    2301  tgtaggactc gacgtcggag ctggatttag ctccttgaat gttcggatgg
    2351  aaatgtgctg acctggatgg ggataccagg tcgaagaatc gcttattctg
    2401  gcatttgtat tttccttcga attggatgag cacgtgcaga tgaggctccc
    2451  cattctcatg gagctctcta cagatcttga tgaatttagt gttggtgggt
    2501  gtttgaagcg ctcgaatttg tgaaagtgcc tcttctttag agagagagca
    2551  cctaggataa gtgaggaaat agtttttggc gtttatttga aagcgcttag
    2601  gaggtgtcat tctctctcct caatcggtac tcaaccattt agcccctata
    2651  ttaggtactc aatatataca tgagtaccaa atggcatata tgtaaataag
    2701  aggaatataa tttgaatttg aaagcggcca tccgtataat att