Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Uganda variant segment DNA A, complete sequence, isolate EACMV-UG[K73]
ACC No: AJ717532
Dated: 2006-09-14 | Length: 2799 | CRC: 542692219
ID AJ717532; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC AJ717532; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus-Uganda variant segment DNA A, complete DE sequence, isolate EACMV-UG[K73] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic virus-Uganda variant OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2799 RA Bull S.E.; RT ; RL Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87:3053-3065(2006). XX RN [4] RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. ., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX FH Key Location/Qualifiers FH FT source 1. .2799 FT /organism="East African cassava mosaic virus-Uganda FT variant" FT /segment="DNA A" FT /specific_host="Manihot esculenta" FT /isolate="EACMV-UG[K73]" FT /mol_type="genomic DNA" FT /country="Kenya:Busia, Ekondokera" FT /clone="K73FA-13[2002]" FT /virion FT /db_xref="taxon:374777" FT CDS 172. .528 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /protein_id="CAJ78034.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQNVSKPRCP" FT CDS 332. .1105 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /protein_id="CAJ78035.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIRMDENSKKQNHTNNVMLYRRRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRCYKLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1102. .1506) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="InterPro:IPR000657" FT /protein_id="CAJ78036.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1247. .1654) FT /pseudo FT /codon_start=1 FT /gene="AC2" FT /note="start codon could not be defined" FT /note="AC2 protein" FT CDS complement(1563. .2642) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /protein_id="CAJ78038.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLPKEEALSQLQALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNTTFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT CDS complement(2252. .2485) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /protein_id="CAJ78039.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR FT PMSKLTLKREGNFLTLDFSKSMPEVQEGRASI" XX SQ Sequence 2799 BP; 729 A; 551 C; 739 G; 780 T; 0 other; aj717532 Length: 2799 14-SEP-2006 Type: N Check: 4899 .. 1 accggatggc cgcgcccgaa aaagcaggtg ggccccacaa tgaccgcgcc 51 cgtgaaagaa agtggtcctg gcgcacttgt tttggtcggc cagtcatatt 101 cacgcgtgaa cgtctagata tttgttgttt gtctttatag acttcgtcgc 151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc 201 cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac 251 atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg 301 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag 351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc 401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag 451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca 501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag 551 gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 601 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa 651 agaggttttg tatcaagtcc atttacattc ttggtaagat ccggatggat 701 gaaaatagta agaagcagaa tcacactaat aatgtgatgt tataccggcg 751 tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat 801 ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg 851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 901 tccatctggc atgaaggagc aggcgttggt gaaaaggtgt tacaagctga 951 atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac 1001 acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc 1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa 1101 attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg 1151 ttgagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa 1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg 1301 aagttgagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt 1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggcctct 1401 tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta 1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga 1501 atccatggtt gatgcagtcg atatggagat agaatgagca gccgcattcg 1551 aggtctaccc gcctacgtct gacggccctg gtcttcgctg tgcggtgttg 1601 gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg 1651 gtattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag 1701 aaactcttta tatgatgatg ttggtcctgg attgcagagg aagatagtgg 1751 gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc 1801 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg 1851 gtcgacgtca tcgatgacgt tgtaccaggc gtcgtttgaa tataccttgg 1901 gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga 1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat 2001 cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata 2051 cctctatgtc ttccgggact tgtgtaaaag atgatgataa gaacggacta 2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat 2151 gttatgaaac tgtaaaaaaa aggactttgg atctttttct ttaataattt 2201 gaagagcctc ggatttagac gaagcattca acgcgtctgc atatacctga 2251 gctaaatgct ggccctcccc tcttgcactt ctggcatcga cttggaaaag 2301 tccagcgtca agaaattccc ctcccttttc aatgtaagct ttgacatcgg 2351 acgatgattt agctccctga atgttcggat ggaaatgtgt tgatcgggat 2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc 2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc 2501 tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat 2551 tgggaaaggg cctcttcttt tggtaatgag catcggggat aggttatgaa 2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg 2651 tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg 2701 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact 2751 tccattcaaa atttgaattc cgaatattgg cggccatccg attaatatt