Sequence of DPV East African cassava mosaic virus

East African cassava mosaic virus-Uganda variant segment DNA A, complete sequence, isolate EACMV-UG[K282]

ACC No: AJ717535

Dated: 2006-09-14 | Length: 2799 | CRC: -694204289

                
ID   AJ717535; SV 1; circular; genomic DNA; STD; VRL; 2799 BP.
XX
AC   AJ717535;
XX
DT   09-MAR-2006 (Rel. 87, Created)
DT   14-SEP-2006 (Rel. 89, Last updated, Version 3)
XX
DE   East African cassava mosaic virus-Uganda variant segment DNA A, complete
DE   sequence, isolate EACMV-UG[K282]
XX
KW   AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein;
KW   AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein.
XX
OS   East African cassava mosaic virus-Uganda variant
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2799
RA   Bull S.E.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Bull S.E., Department of Disease & Stress Biology, John Innes Centre,
RL   Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM.
XX
RN   [2]
RA   Bull S.E.;
RT   "Diversity of cassava-infecting geminiviruses in Kenya";
RL   Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK.
XX
RN   [3]
RA   Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G.,
RA   Stanley J.;
RT   "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL   J. Gen. Virol. 87:3053-3065(2006).
XX
RN   [4]
RA   Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. .,
RA   Stanley J.;
RT   "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL   J. Gen. Virol. 87(Pt 10):3053-3065(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2799
FT                   /organism="East African cassava mosaic virus-Uganda
FT                   variant"
FT                   /segment="DNA A"
FT                   /specific_host="Manihot esculenta"
FT                   /isolate="EACMV-UG[K282]"
FT                   /mol_type="genomic DNA"
FT                   /country="Kenya:Makueni, Wote"
FT                   /clone="K282FA-2[2002]"
FT                   /virion
FT                   /db_xref="taxon:374777"
FT   CDS             172. .528
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="AV2 protein"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /protein_id="CAJ78052.1"
FT                   /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT                   IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT                   ETQDVQNVSKPRCP"
FT   CDS             332. .1105
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="AV1 protein"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /protein_id="CAJ78053.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT                   NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT                   VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE
FT                   PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT                   HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT   CDS             complement(1102. .1506)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="AC3 protein"
FT                   /db_xref="InterPro:IPR000657"
FT                   /protein_id="CAJ78054.1"
FT                   /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI
FT                   ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT                   VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY"
FT   CDS             complement(1247. .1654)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="AC2 protein"
FT                   /protein_id="CAJ78055.1"
FT                   /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT                   DCINHGFSHRGTHHCASSKEWRFYLGHNKSPIFRNHRPRQEAREHEPRHHHSPDTVQPQ
FT                   PSEGIGDSQVFSELQGLDDLTASDWSFLKSI"
FT   CDS             complement(1563. .2642)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="AC1 protein"
FT                   /protein_id="CAJ78056.1"
FT                   /translation="MPRAGRFQINAKNYFITYPRCSLTKEAALSQLQALSYPTNIKFIR
FT                   VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT                   KKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT                   NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGRPIHIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT                   FSSAHQSPTPHSEDQGRQT"
FT   CDS             complement(2252. .2485)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /protein_id="CAJ78057.1"
FT                   /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR
FT                   PMSKLTLKREGNFLTLDFSKSMPEVQGGRANI"
XX
SQ   Sequence 2799 BP; 730 A; 551 C; 732 G; 786 T; 0 other;

aj717535 Length: 2799  14-SEP-2006  Type: N  Check: 1065  ..

       1  accggatggc cgcgcccgaa aaagcaggtg gaccccacaa ggaccgcgcc
      51  cgtgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt
     101  cacgcgtgaa agtctagata tgtgttgttt gtctttatag acttcgtcgc
     151  gaagtagtag agcgcgtcaa catgtgggat ccattggtta acgattttcc
     201  cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac
     251  atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
     301  gatctaatag gggttttacg gtgtaagaat tatgtcgaag cgaccaggag
     351  atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
     401  gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
     451  aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca
     501  gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
     551  gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa
     601  ggtgattagt gatgtgacgc gtgggcctgg gctgacgcac agggtcggaa
     651  agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
     701  gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct
     751  tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
     801  ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg
     851  agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
     901  tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
     951  atcatcacgt tacatataat catcaggagg cagggaagta tgagaatcac
    1001  acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc
    1051  tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
    1101  attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
    1151  tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
    1201  aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
    1251  atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg
    1301  aagttcagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
    1351  gaaccgtatc tggagagtga tgatgtcgtg gttcatgttc cctggcctct
    1401  tgtcgtggtc ggtgatttcg aaatataggg gatttgttat gtcccaggta
    1451  aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
    1501  atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg
    1551  aggtctaccc gcctacgtct gacggccctg gtcttcgctg tgcggtgttg
    1601  gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg
    1651  gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag
    1701  aaactcttta tatgatgatg ttggtcctgg attgcagagg aagatagtgg
    1751  gaatgccgcc tttaatatga attggccttc cgtattttgt attgctttgc
    1801  cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg
    1851  gtcgacgtca tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg
    1901  gagacagatc caggtggcca caaagataat tatggggtcc cagtgaacga
    1951  gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
    2001  cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata
    2051  cctctatgtc ttctggcact tgtgtaaaag aggatgataa gaacggacta
    2101  acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
    2151  gttatggaac tgtaaaaaaa aggactttgg atccttttct ttaataattt
    2201  gaagagcctc ggatttagac gaagcattca atgcgtctgc atatacctga
    2251  gctaaatgtt ggccctcccc ccttgcactt ctggcatcga cttggaaaag
    2301  tccagcgtca agaaattccc ctcccttttt aatgtaagct ttgacatcgg
    2351  acgatgattt agctccctga atgttcggat ggaaatgtgt tgatcgggat
    2401  ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc
    2451  gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc
    2501  tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat
    2551  tgggaaaggg ccgcttcttt tgttaatgag catcggggat aggttatgaa
    2601  ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggccg
    2651  tcgttttgga tcgggggaca ctcaaagtct gtagcaatcg gtggaatggg
    2701  gggcaattta tatgatgtcc cccaatggca tatgtgtaaa taggtagact
    2751  gtcattcaaa atttgaattc cgaatatcgg cggccatccg attaatatt