Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Uganda variant segment DNA A, complete sequence, isolate EACMV-UG[K282]
ACC No: AJ717535
Dated: 2006-09-14 | Length: 2799 | CRC: -694204289
ID AJ717535; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC AJ717535; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus-Uganda variant segment DNA A, complete DE sequence, isolate EACMV-UG[K282] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic virus-Uganda variant OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2799 RA Bull S.E.; RT ; RL Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87:3053-3065(2006). XX RN [4] RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. ., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX FH Key Location/Qualifiers FH FT source 1. .2799 FT /organism="East African cassava mosaic virus-Uganda FT variant" FT /segment="DNA A" FT /specific_host="Manihot esculenta" FT /isolate="EACMV-UG[K282]" FT /mol_type="genomic DNA" FT /country="Kenya:Makueni, Wote" FT /clone="K282FA-2[2002]" FT /virion FT /db_xref="taxon:374777" FT CDS 172. .528 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /protein_id="CAJ78052.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQNVSKPRCP" FT CDS 332. .1105 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /protein_id="CAJ78053.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1102. .1506) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="InterPro:IPR000657" FT /protein_id="CAJ78054.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1247. .1654) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /protein_id="CAJ78055.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPIFRNHRPRQEAREHEPRHHHSPDTVQPQ FT PSEGIGDSQVFSELQGLDDLTASDWSFLKSI" FT CDS complement(1563. .2642) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /protein_id="CAJ78056.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEAALSQLQALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT KKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGRPIHIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT CDS complement(2252. .2485) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /protein_id="CAJ78057.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR FT PMSKLTLKREGNFLTLDFSKSMPEVQGGRANI" XX SQ Sequence 2799 BP; 730 A; 551 C; 732 G; 786 T; 0 other; aj717535 Length: 2799 14-SEP-2006 Type: N Check: 1065 .. 1 accggatggc cgcgcccgaa aaagcaggtg gaccccacaa ggaccgcgcc 51 cgtgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt 101 cacgcgtgaa agtctagata tgtgttgttt gtctttatag acttcgtcgc 151 gaagtagtag agcgcgtcaa catgtgggat ccattggtta acgattttcc 201 cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac 251 atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg 301 gatctaatag gggttttacg gtgtaagaat tatgtcgaag cgaccaggag 351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc 401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag 451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca 501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag 551 gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 601 ggtgattagt gatgtgacgc gtgggcctgg gctgacgcac agggtcggaa 651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat 701 gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct 751 tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat 801 ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg 851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga 951 atcatcacgt tacatataat catcaggagg cagggaagta tgagaatcac 1001 acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc 1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa 1101 attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg 1151 tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa 1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg 1301 aagttcagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt 1351 gaaccgtatc tggagagtga tgatgtcgtg gttcatgttc cctggcctct 1401 tgtcgtggtc ggtgatttcg aaatataggg gatttgttat gtcccaggta 1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga 1501 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg 1551 aggtctaccc gcctacgtct gacggccctg gtcttcgctg tgcggtgttg 1601 gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg 1651 gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag 1701 aaactcttta tatgatgatg ttggtcctgg attgcagagg aagatagtgg 1751 gaatgccgcc tttaatatga attggccttc cgtattttgt attgctttgc 1801 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg 1851 gtcgacgtca tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg 1901 gagacagatc caggtggcca caaagataat tatggggtcc cagtgaacga 1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat 2001 cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata 2051 cctctatgtc ttctggcact tgtgtaaaag aggatgataa gaacggacta 2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat 2151 gttatggaac tgtaaaaaaa aggactttgg atccttttct ttaataattt 2201 gaagagcctc ggatttagac gaagcattca atgcgtctgc atatacctga 2251 gctaaatgtt ggccctcccc ccttgcactt ctggcatcga cttggaaaag 2301 tccagcgtca agaaattccc ctcccttttt aatgtaagct ttgacatcgg 2351 acgatgattt agctccctga atgttcggat ggaaatgtgt tgatcgggat 2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc 2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc 2501 tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat 2551 tgggaaaggg ccgcttcttt tgttaatgag catcggggat aggttatgaa 2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggccg 2651 tcgttttgga tcgggggaca ctcaaagtct gtagcaatcg gtggaatggg 2701 gggcaattta tatgatgtcc cccaatggca tatgtgtaaa taggtagact 2751 gtcattcaaa atttgaattc cgaatatcgg cggccatccg attaatatt