Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus segment DNA A, complete sequence, isolate EACMV-[K9]
ACC No: AJ717545
Dated: 2006-09-14 | Length: 2801 | CRC: 1434991973
ID AJ717545; SV 1; circular; genomic DNA; STD; VRL; 2801 BP.
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AC AJ717545;
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DT 09-MAR-2006 (Rel. 87, Created)
DT 14-SEP-2006 (Rel. 89, Last updated, Version 3)
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DE East African cassava mosaic virus segment DNA A, complete sequence, isolate
DE EACMV-[K9]
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KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein;
KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein.
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OS East African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2801
RA Bull S.E.;
RT ;
RL Submitted (19-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre,
RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM.
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RN [2]
RA Bull S.E.;
RT "Diversity of cassava-infecting geminiviruses in Kenya";
RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK.
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RN [3]
RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G.,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87:3053-3065(2006).
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RN [4]
RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. .,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87(Pt 10):3053-3065(2006).
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FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="East African cassava mosaic virus"
FT /segment="DNA A"
FT /specific_host="Manihot esculenta"
FT /isolate="EACMV-[K9]"
FT /mol_type="genomic DNA"
FT /country="Kenya:Kilifi, Mwezangombe"
FT /clone="K9AFA-3[2001]"
FT /virion
FT /db_xref="taxon:62079"
FT CDS 174. .530
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q2A8V6"
FT /protein_id="CAJ78112.1"
FT /translation="MWDPLLNDFPETVHGFRAMLAVKYLLHLEQKYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT EAQDVQNVSKPRRP"
FT CDS 334. .1107
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1 protein"
FT /db_xref="GOA:Q2A8V5"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q2A8V5"
FT /protein_id="CAJ78113.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGPGITHR
FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHALNPVYATLKIRIYFYDAVTN"
FT CDS complement(1104. .1508)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q2A8V4"
FT /protein_id="CAJ78114.1"
FT /translation="MDSRTGELITAPQAMNGVFTWEITNPLYFAITDHDKRPGNMNHDI
FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLRVFRYQVLKYLDMIGVISINT
FT VLHAVAHVLYDVLLNTLQVTEHHAIKFNLY"
FT CDS complement(1249. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="GOA:Q2A8V3"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q2A8V3"
FT /protein_id="CAJ78115.1"
FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT HPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT CDS complement(1565. .2644)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /db_xref="GOA:Q2A8V2"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q2A8V2"
FT /protein_id="CAJ78116.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEETLSQLKAFSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVTEEIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEERNRSLKAWALKNATFITLHEPL
FT FSSSHQSPTPHSEDQGRQT"
FT CDS complement(2254. .2487)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q2A8U5"
FT /protein_id="CAJ78117.1"
FT /translation="MGCLISMFSSNSKASSNVPTPDSSISFPHPDQHISIRTFRELNRR
FT PMSRLTLKREGNFLTMEFSKSMPEVPGGRASI"
XX
SQ Sequence 2801 BP; 726 A; 556 C; 736 G; 783 T; 0 other;
aj717545 Length: 2801 14-SEP-2006 Type: N Check: 7805 ..
1 accggatggc cgcgcccgaa aaagcatgtg gatcccacgg gatggccgcg
51 cccgtgaaag aacgtggtcc ccgcgcacgt gttttggtcg gccagtcata
101 ttcacgcgtg aaagtctaga tatttgtggt ttgtctttat agacttcgtc
151 gcgaagtagt ggagcgcgtc aacatgtggg atccattgtt gaacgatttt
201 cccgaaaccg ttcacggttt ccgtgctatg cttgctgtta aatacctgtt
251 acatcttgaa cagaaatacg atcgcggtac tgtcggggct gagtatatac
301 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg
351 agatataata atctcaacac ccgtatccaa ggtgcggagg aggctgaact
401 tcgacagccc atacacgaac cgtgttgttg cccccactgt ccgcgtcacc
451 agaagcaaaa tatgggccaa caggcccatg tatcggaagc ccaagatgta
501 cagaatgtat cgaagcccag acgtccctaa gggctgtgaa ggcccatgta
551 aggttcagtc ctatgaacag agggatgatg ttaagcacac tggtatggtt
601 cgatgtgtca gtgatgttac ccgtgggcca ggcattaccc atagagtcgg
651 gaagaggttt tgtgtgaagt ccatatatat attgggcaag atctggatgg
701 atgagaatat caagaagcaa aatcatacga accatgttat gttcttcctg
751 gttcgagata gaaggcctta tgggccgagc cctcaagatt ttggacaagt
801 gttcaacatg tttgataatg aacctactac ggcaactgtg aagaatgatc
851 ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggt
901 ggaccctctg gcatgaagga acaagcgctg gttaagaggt tttttaggat
951 caataatcat gttgtgtata atcatcagga acaggccaag tatgagaatc
1001 atacggagaa tgcgttgtta ttgtatatgg catgtacaca tgccttgaat
1051 cctgtgtacg ctacgctgaa aatacgcatc tatttctatg atgcagtgac
1101 aaattaataa aggttgaatt ttattgcatg gtgctccgta acttggagtg
1151 tgtttagtaa tacatcgtac agaacatgag caacagcgtg aagtacagtg
1201 ttaatggaaa taacgccaat catatctaaa tatttgagca cttgatatct
1251 aaatactctt aagaaaagac cagtcggagg ccgtaaggtc gtccagacct
1301 tgaagttgag aaaacacttg tgaatcccca atgccttccg gatgttgtgg
1351 ttgaaccgta tctggagtgt gatgatgtcg tggttcatgt tccctggcct
1401 cttgtcgtgg tcggtgattg cgaaatagag gggatttgtt atttcccagg
1451 taaaaacgcc attcattgct tgaggcgcag tgatgagttc ccctgtgcga
1501 gaatccatgg ttgatgcagt cgatatgtag atagaacgag cagccgcatt
1551 cgaggtctac ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt
1601 tggactttga tgggaacttg agaacaatgg ctcgtggagg gtgatgaagg
1651 tggcattctt taaagcccag gctttaaggg accgattcct ttcctcgtcc
1701 agaaactctt tatatgatga tgttggtcct ggattgcaga ggaagatagt
1751 gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt
1801 gccagtccct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg
1851 gggtcgacgt catcaatgac gttgtaccag gcgtcgtttg aatatatctt
1901 tggagacaga tccaggtgtc cacataaata attatgtggg ccgagggaac
1951 gagcccacat ggtcttcccg gttcggctat caccttctag aacaatactg
2001 atcggtctcc atggccgcgc agcgggactg catatatttt cggataccca
2051 tacttctatt tcctctgtga cttgtgtaaa tgaggatgat aagaacggac
2101 taacgtaagt ttggggcgga gcctggaaga ttctatctgc gttagcagat
2151 atgttatgga actgtaaaaa aaaggacttg ggatcttttt ctttgataat
2201 ttgaagagct tctgatttag aagaagcatt caacgcgtct gcatatacct
2251 gagctaaatg ctggccctcc cccctggcac ttcgggcatc gacttggaaa
2301 attccatcgt caagaaattc ccctcccttt tcaatgtaag ccttgacatc
2351 ggacgacgat ttagctccct gaatgttcgg atggaaatgt gttgatcggg
2401 atggggaaat gagatcgaag aatctggggt tggtacattg gaacttgcct
2451 tcgaattgga tgagaacatg gagatgaggc accccatcct gatgtagttc
2501 tctgcaaacc ctaatgaatt tgatattcgt cgggtaagaa aaggctttta
2551 attgggaaag ggtctcttcc tttgttaagg agcatcgggg ataggtgatg
2601 aaataatttt tggcatttat ttgaaaacga ccggctcttg gcatatttgc
2651 tgtcgttttg gatcggggga cactcaaaac tccaggggaa cggtggaatg
2701 gggggcatta tataggatgt cccccaatgg catatgtgta aataggtaga
2751 gttccattca aaatttgaat tgcgactatt ggcggccatc cgattaatat
2801 t