Sequence of DPV East African cassava mosaic Cameroon virus

East African cassava mosaic Cameroon virus DNA-A

ACC No: AJ867444

Dated: 2005-04-15 | Length: 2800 | CRC: 660667102

                !!NA_SEQUENCE 1.0
ID   AJ867444   standard; circular genomic DNA; VRL; 2800 BP.
XX
AC   AJ867444;
XX
SV   AJ867444.1
XX
DT   07-DEC-2004 (Rel. 82, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   East African cassava mosaic Cameroon virus DNA-A
XX
KW   AC1 gene; AC2 gene; AC3 gene; AV1 gene; AV2 gene; coat protein;
KW   precoat protein; relication initiation protein;
KW   replicational enhancer protein; transcriptional activator.
XX
OS   East African cassava mosaic Cameroon virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2800
RA   Winter S.;
RT   ;
RL   Submitted (06-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL   Winter S., Plant Virus Division, DSMZ, c/o BBA, Messeweg 11/12, 38104,
RL   GERMANY.
XX
RN   [2]
RA   Ariyo O.A., Koerbler M., Dixon A.G.O., Atiri G.I., Winter S.;
RT   "Molecular variability and distribution of Cassava mosaic begomoviruses in
RT   Nigeria";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2800
FT                   /country="Nigeria:Kano"
FT                   /db_xref="taxon:223262"
FT                   /mol_type="genomic DNA"
FT                   /virion
FT                   /organism="East African cassava mosaic Cameroon virus"
FT                   /isolation_source="plant"
FT                   /specific_host="Manihot esculenta"
FT                   /segment="DNA-A"
FT   CDS             173. .520
FT                   /db_xref="UniProt/TrEMBL:Q5L4H3"
FT                   /gene="AV2"
FT                   /product="precoat protein"
FT                   /protein_id="CAI30102.1"
FT                   /translation="MWNPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT                   IGVLRCKSYGEATRRYNNLNTRIQGAEGAELRQPIHEPCGCPYCPRHQKQNMGQQAHVS
FT                   EAQDVQDVSKP"
FT   CDS             333. .1106
FT                   /db_xref="GOA:Q5L4H2"
FT                   /db_xref="UniProt/TrEMBL:Q5L4H2"
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /protein_id="CAI30103.1"
FT                   /translation="MAKRPGDIIISTPVSKVRRGLNFDSPYTNRVVAPTVRVTRSKIWA
FT                   NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSEVTRGSGITHR
FT                   VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT                   PTTATVKNDYRDRFQVLRKFHATVVGGPSGMKEQALVKRFFRINNHIVYNHQEQAKYEN
FT                   HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT   CDS             complement(1103. .1507)
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProt/TrEMBL:Q5L4H1"
FT                   /gene="AC3"
FT                   /product="replicational enhancer protein"
FT                   /protein_id="CAI30104.1"
FT                   /translation="MDLRTGEDIGALQWRNGAFIWEIPNPLYFTILNHDSMPFNMNRDI
FT                   IDVQIRFNYNLRKALGMHKCFLNFRVWTRLHPQTWRFFKTFRTQVMKYLTNLGVISIST
FT                   VIDAVHHVLNIVFVGTLSVSQDHAIKFNIY"
FT   CDS             complement(1248. .1655)
FT                   /db_xref="GOA:Q5L4H0"
FT                   /db_xref="UniProt/TrEMBL:Q5L4H0"
FT                   /gene="AC2"
FT                   /product="transcriptional activator"
FT                   /protein_id="CAI30105.1"
FT                   /translation="MRSSSPSPSHSSPPPIKARHRQAKIRAPRRRRIDLTCGCSIYRSI
FT                   NCHNHGFTHRGRHWCSSMEEWRLYLGDPKSPIFHNPQPRQHAVQHESRHNRCPDSVQLQ
FT                   PEESTGDAQVFSQLPGLDSFTSSDLAFLQNL"
FT   CDS             complement(1585. .2643)
FT                   /db_xref="GOA:Q5L4G9"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProt/TrEMBL:Q5L4G9"
FT                   /gene="AC1"
FT                   /product="relication initiation protein"
FT                   /protein_id="CAI30106.1"
FT                   /translation="MPRAGRFQINAKNYFITYPRCSLAKEEALSQLKALSYPTNIKFIR
FT                   VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT                   EKGGEFLDDGIFQVDARSARGEGQHLAQVYAEALNASSKSEALQIIKEKDPKSFFLQFH
FT                   NISANADRIFQAPPQTYVSPFLSSSFTHVPEEIEVWVSENICRPAARPWRPISIVLEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVGPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKEYLDEDKNSTLKNWAIKNALFISLTEPL
FT                   FSSTDQSQAQAS"
XX
SQ   Sequence 2800 BP; 754 A; 550 C; 717 G; 779 T; 0 other;

 AJ867444  Length: 2800  April 19, 2005 08:55  Type: N  Check: 4786  ..

       1  accggatggc cgcgcccgaa aaaagcatgt gggcctcatg atagtccgcg
      51  tccgcaaaag aaagtggtcc ccgcgcacgc atgtttgtcg gccaataaga
     101  ttggcgcctt gaatgctaga tattgagttt tgactttata tacttcgtca
     151  cgaagtagtg gagcgcgtca aaatgtggaa tccgttagtt aacgattttc
     201  cggaaaccgt tcacggtttc cgttcgatgc ttgctgttaa atacctgtta
     251  catctggaac aggaatatga tcgcggtact gtcggggcgg agtatatacg
     301  tgatctaata ggggtgctac ggtgtaagag ttatggcgaa gcgaccagga
     351  gatataataa tctcaacacc cgtatccaag gtgcggaggg ggctgaactt
     401  cgacagccca tacacgaacc gtgtggttgc ccctactgtc cgcgtcacca
     451  gaagcaaaat atgggccaac aggcccatgt atcggaagcc caagatgtac
     501  aggatgtatc gaagccctga cgtccctaag ggctgtgaag gcccatgtaa
     551  ggttcagtct tatgaacaga gagatgatgt gaagcatact ggtatagtcc
     601  gatgtgtcag tgaagttacg cgtgggtcag gcattaccca tagagttggg
     651  aagaggtttt gtgtgaagtc catatatata ttgggcaaga tctggatgga
     701  tgagaatatc aagaagcaaa atcatacgaa ccatgttatg ttttttctcg
     751  ttcgagatag aaggccttat gggccgagtc ctcaagattt tggacaagtg
     801  ttcaacatgt ttgataatga acctacgact gcaactgtga agaatgatta
     851  tagggaccgg tttcaggtgt tacgtaaatt ccatgcgact gtagttggtg
     901  gaccctcagg gatgaaggaa caagctttgg taaagaggtt ttttaggatc
     951  aataatcata tagtgtataa tcatcaggaa caggccaagt atgagaatca
    1001  taccgagaat gcgttgttat tgtatatggc atgtacacat gcctcaaatc
    1051  ctgtgtacgc tacgcttaaa atacgcatct atttctatga tgcagtgaca
    1101  aattaataaa tattaaattt gattgcatga tcttgggata cagatagggt
    1151  gcccacaaaa acgatattca atacatgatg cactgcatct attacagttg
    1201  aaatcgaaat aacacctaaa ttagtgagat atttcatgac ttgtgtccta
    1251  aaggttttga agaaacgcca agtctgagga tgtaaacgag tccagacccg
    1301  gaagttgaga aaacacttgt gcatccccag tgctttcctc aggttgtagt
    1351  tgaaccgaat ctggacatct attatgtcgc gattcatgtt gaacggcatg
    1401  ctgtcgtggt tgaggattgt gaaatatagg ggatttggga tctcccagat
    1451  aaaggcgcca ttcctccatt gaagagcacc aatgtcttcc cctgtgcgta
    1501  aatccatggt tgtgacaatt aatgctgcga tagatggaac agccacaagt
    1551  taggtcgatg cgtcgacgtc taggtgctct gattttagct tgcctgtgcc
    1601  tggctttgat cggtggagga gaagagtggc tcggtgaggg agatgaagag
    1651  cgcattcttg atcgcccaat tcttgagagt ggaattcttg tcctcgtcta
    1701  ggtattcttt ataggacgaa ttgggacccg gattgcataa gaagatggtg
    1751  ggaatcccac ctttaatttg aatgggcttt ccgtattttg tgtttgattg
    1801  ccaatctcgt tgggccccca tgaactcttt gaaatgcttt agataatgcg
    1851  ggcctacgtc gtcaatgacg ttgtaccatg cgtcgtttga atatatcttg
    1901  ggagacagat ccaggtgtcc acatagatag ttatgtgggc ccagagatcg
    1951  ggcccacatc gtcttcccgg ttcggctatc accttcgaga acaatactga
    2001  tcggtctcca tggccgcgca gcgggacggc atatattttc ggatacccat
    2051  acttctattt cctctgggac gtgcgtaaat gaggatgata agaacggact
    2101  aacgtaagtt tgtggcggag cctggaagat gcgatccgcg ttagcagata
    2151  tgttatggaa ctgtaaaaaa aaggactttg gatccttttc tttgataatt
    2201  tgaagagctt ctgatttaga agaagcattc aacgcttctg catatacctg
    2251  tgctaaatgc tggccctccc ccctggcact tctggcatcg acctggaaaa
    2301  ttccatcgtc aagaaattcc cctccctttt caatgtaagc cttgacatcg
    2351  gacgatgatt tagctccctg aatgttcgga tggaaatgtg ttgatcggga
    2401  tggggaaatg agatcgaaga atctggggtt ggtacattgg aacttgcctt
    2451  cgaattggat gagaacatgg agatgaggca ccccatcctg atgtagttct
    2501  ctgcaaaccc taatgaattt gatattcgtc gggtaagaaa gggctttcaa
    2551  ttgggaaagg gcctcttcct ttgctaagga gcatcgggga taggttatga
    2601  aataattttt ggcatttatt tgaaaacgac cggctctcgg catatttgct
    2651  gtcgttttgt atcgggggac actcaaaact ccaggggaac ggtggaatgg
    2701  ggggcattat atatgatgtc ccccaatggc atatgtgtaa ataggtagac
    2751  ttccattcaa aatttgaatt gtgaatattg gcggccatcc gattaatatt