Sequence of DPV Rice yellow mottle virus

Rice yellow mottle virus mRNA for coat protein (ORF4 gene), isolate BF682

ACC No: AJ885093

Dated: 2005-06-23 | Length: 720 | CRC: 428738595

                !!NA_SEQUENCE 1.0
ID   AJ885093   standard; mRNA; VRL; 720 BP.
XX
AC   AJ885093;
XX
SV   AJ885093.1
XX
DT   23-JUN-2005 (Rel. 84, Created)
DT   23-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Rice yellow mottle virus mRNA for coat protein (ORF4 gene), isolate BF682
XX
KW   coat protein; cp gene; ORF4.
XX
OS   Rice yellow mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN   [1]
RP   1-720
RA   Fargette D.;
RT   ;
RL   Submitted (17-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Fargette D., Dgpc, Ird, BP64501, 34394 Montpellier cedex 5, FRANCE.
XX
RN   [2]
RA   Traore O., Sorho F., Pinel A., Abubakar Z.;
RT   "Processes of diversification and dispersion of Rice yellow mottle virus
RT   inferred from large-scale and high resolution phylogeographic studies";
RL   Mol. Ecol. 0:0-0(0).
XX
RN   [3]
RA   Traore O., Sorho F., Pinel A., Abubakar Z., Banwo O., Maley J., Hebrard E.,
RA   Winter S., Sere Y., Konate G., Fargette D.;
RT   "Processes of diversification and dispersion of Rice yellow mottle virus
RT   inferred from large-scale and high resolution phylogeographic studies";
RL   Mol. Ecol. 14(7):2097-2110(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .720
FT                   /country="Burkina Faso"
FT                   /db_xref="taxon:31744"
FT                   /mol_type="mRNA"
FT                   /virion
FT                   /organism="Rice yellow mottle virus"
FT                   /isolate="BF682"
FT   CDS             1. .720
FT                   /evidence=EXPERIMENTAL
FT                   /note="ORF4"
FT                   /product="coat protein"
FT                   /protein_id="CAI59640.1"
FT                   /translation="MARKGKKVNSNQGQQGKRKSRRPRGRSAEPQLQRAPVAQASRISG
FT                   TVPGPLSSNTWPLHSVEFLADFKRSSTSADATTYDCVPFNLPRVWSLARCYSMWKPTRW
FT                   DVVYLPEVSATVAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG
FT                   SARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVSDTPGKLY
FT                   VIASMVLRDPVDPTLNT"
XX
SQ   Sequence 720 BP; 153 A; 199 C; 213 G; 155 T; 0 other;

  AJ885093  Length: 720  June 28, 2005 08:34  Type: N  Check: 8264  ..

       1  atggccagga agggcaagaa agtcaactcc aaccaggggc agcaaggaaa
      51  gcggaagagc cggcgtccac gtggacgatc ggcggagccc cagcttcaac
     101  gggctccagt ggctcaggcc tcccggatat ctgggacggt tcctggtcca
     151  ctatcttcta acacctggcc gctccactcc gttgagttcc tagcggactt
     201  caagcggagt tccacatcgg cggatgcgac gacatacgat tgtgtgccgt
     251  ttaacctgcc tcgggtgtgg agtcttgctc gttgttactc catgtggaag
     301  ccaacacggt gggatgtcgt ttacctccct gaggtgagcg ccacggtagc
     351  tggaagtatc gagatgtgtt ttctctacga ctatgctgac accatcccaa
     401  gtgacacggg caagatgagc aggacggcgg gcttcgtcac ctctagcgtt
     451  tggtacggcg cggagggctg ccacttacta agtggtggct cagcacgaaa
     501  tgccgtggtc gcctcgatgg actgttcccg agtcggctgg aaacgcgtta
     551  ctagttccat acctagtagc gtggatccca acgtcgtaaa caccatactg
     601  ccggctaggc tagccgtgcg atcgtcgatc aaaccgacgg ttagtgatac
     651  gccggggaaa ctctacgtta tcgctagtat ggtcctgcgg gatccggttg
     701  atccaacact caatacgtga