Sequence of DPV Pepino mosaic virus

Pepino mosaic virus TGBp2 gene (partial), TGBp3 gene and CP gene (partial), genomic RNA, isolate Mu 04.8

ACC No: AM040183

Dated: 2005-10-20 | Length: 982 | CRC: 715312319

                !!NA_SEQUENCE 1.0
ID   AM040183   standard; genomic RNA; VRL; 982 BP.
XX
AC   AM040183;
XX
SV   AM040183.1
XX
DT   20-OCT-2005 (Rel. 85, Created)
DT   20-OCT-2005 (Rel. 85, Last updated, Version 1)
XX
DE   Pepino mosaic virus TGBp2 gene (partial), TGBp3 gene and CP gene (partial),
DE   genomic RNA, isolate Mu 04.8
XX
KW   coat protein; CP gene; TGBp2 gene; TGBp3 gene; triple gene block protein 2;
KW   triple gene block protein 3.
XX
OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-982
RA   Pagan I.;
RT   ;
RL   Submitted (20-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Pagan I., Biotecnologia, E.T.S. Ingenieros Agronomos, Ciudad Universitaria,
RL   Madrid, 28040, SPAIN.
XX
RN   [2]
RA   Pagan I., Cordoba-Selles M., Martinez-Priego L., Fraile A., Malpica J.M.,
RA   Jorda C., Garcia-Arenal F.;
RT   "Genetic structure of the population of Pepino mosaic virus infecting
RT   tomato crops in Spain";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .982
FT                   /country="Spain:Murcia"
FT                   /db_xref="taxon:112229"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Pepino mosaic virus"
FT                   /isolate="Mu 04.8"
FT                   /specific_host="Lycopersicon esculentum"
FT   CDS             <1. .354
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /protein_id="CAJ04663.1"
FT                   /translation="RADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRLPFGGQY
FT                   QDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQHSCYNTH
FT                   SATNNTQPLSGHH"
FT   CDS             206. .460
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /protein_id="CAJ04674.1"
FT                   /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVTIDGAAIVITNCENTPEVLKAINFSPWNGLSFPQLEN"
FT   CDS             499. .>982
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ04678.1"
FT                   /translation="MPDTTPVAFTSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAA"
XX
SQ   Sequence 982 BP; 284 A; 264 C; 167 G; 267 T; 0 other;

AM040183  Length: 982  November 1, 2005 08:46  Type: N  Check: 1497  ..

       1  agagctgacc tcactgacac atacaaaatc attgccattg ctttcttgtt
      51  gtcagcttgc atttacttcc aaaatagcca ctaccaacct gttgctggag
     101  acaacttgca ccgtttgcct tttggtggcc aatatcaaga cggcaccaaa
     151  aagatatctt attttccaca acagcagtca tactttcatt ctggaaacaa
     201  attaaatgtc ctcatactta tcttcattct cacattgggt attgtcctca
     251  ccaataaatt tagttttagc tttagtcgta ctactcacca gcattcttgc
     301  tataacacac attcagcaac caacaataca caaccattgt caggtcacca
     351  ttgacggtgc tgcaatagtc ataacaaatt gtgagaacac accagaagtg
     401  cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt
     451  ggaaaattaa tattgagtgc tcacataatt caacctcaac aaacaatcat
     501  gcctgacaca acacctgttg ctttcacttc aagtgcacca cccacagcca
     551  aagatgctgg tgccaaagct ccttctgact tctcaaatcc caatacagct
     601  cctagtctca gtgatttgaa gaaagtcaag tatgtctcca ccgtgacctc
     651  cgtggccaca ccagctgaaa ttgaagccct aggcaaaatc ttcactgcca
     701  tgggccttgc cgccaatgag actggtccgg ccatgtggga tctagctcgt
     751  gcatatgctg atgtgcagag ttctaaatcg gcacagctga ttggagctac
     801  cccttccaac cctgcactat cacgccgagc ccttgctgct cagtttgatc
     851  gaatcaatat aacccccagg caattttgca tgtactttgc caaagttgtt
     901  tggaacatac ttctcgacag caacattcca ccagcaaatt gggccaaact
     951  tggttaccaa gaagatacaa aatttgctgc tg