Sequence of DPV Ophiostoma mitovirus 1b

Ophiostoma mitovirus 1b RdRp gene for RNA-dependent RNA polymerase, genomic RNA

ACC No: AM087549

Dated: 2006-06-29 | Length: 2572 | CRC: -1806666620

                
ID   AM087549; SV 1; linear; genomic RNA; STD; VRL; 2572 BP.
XX
AC   AM087549;
XX
DT   29-JUN-2006 (Rel. 88, Created)
DT   29-JUN-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Ophiostoma mitovirus 1b RdRp gene for RNA-dependent RNA polymerase, genomic
DE   RNA
XX
KW   RdRp gene; RNA-dependent RNA polymerase.
XX
OS   Ophiostoma mitovirus 1b
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus; unclassified Mitovirus.
XX
RN   [1]
RP   1-2572
RA   Buck K.W.;
RT   ;
RL   Submitted (25-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL   Buck K.W., Biology, Imperial College London, Sir Alexander Fleming
RL   Building, London, SW7 2AZ, UNITED KINGDOM.
XX
RN   [2]
RA   Doherty M., Coutts R.H.A., Brasier C.M., Buck K.W.;
RT   "Sequence of RNA-dependent RNA Polymerase Genes Provides Evidence for Three
RT   More Distinct Mitoviruses in Ophiostoma Novo-ulmi Isolate Ld";
RL   Virus Genes 33(1):41-44(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2572
FT                   /organism="Ophiostoma mitovirus 1b"
FT                   /specific_host="Ophiostoma novo-ulmi"
FT                   /isolate="Ld"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /virion
FT                   /db_xref="taxon:348095"
FT   CDS             73. .2403
FT                   /transl_table=4
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="CAJ32467.1"
FT                   /translation="MKNLYSWQRGSKDLFHVNKGLFLVLKLVWGGTTISKLKSFYVLLV
FT                   HLKTLQEKSGLAYTCQYMKACAIYVMKYVAKDPNKLAINSFSILVSLTDSGIPRIIPSY
FT                   IRYQLRRGNKNSIKALLTVFNLYRVLEYPGVLKLSTITDSSSFTLPSDFSGWLAEFMRS
FT                   QSMTVPFKISDLLNPFLIYSSGPCSPKGMNNTAGWILAFRRLKALFLDKEFFLTLLDPY
FT                   KERRQWWESSPFIKYFNAILPDFDDNVSLGKLAFKEEPGKVRVFAMADCITQWVLHPLH
FT                   QYLFSILKQISIVDATFDQEEGVKTLSAKIKAGKRVVFSLDLSAATDRLPLTIQAQILN
FT                   HIVPKLGDHWANLLVNRDYSVPNHTTLPVNPGTVRYGAGQPMGAYSSWAMLALTHHFIV
FT                   QYCAFKVYHTNSFFKDYLILGDDLLLLDAKVAKQYLQVMNQLDVGVNLAKSLISVRGYG
FT                   EFAKQFLSPDGPLQGVSLREFSSLKDGMSNILSLSTKMNLKPALLLRLFGFGSKSIGHS
FT                   TLPFTRYSLRSSLDHLFISPLANSSNKWLDYFSCIRHLKSLTLNNSLLRYFLWGFEFLK
FT                   YKWVYMKVRENEQLMLKHGTHHYHQIVSETLLNYWCPSPTDEVLKSPNIADLSAGFFFS
FT                   TPPIDKASFKVLMINHINILFSCGSLFTELMNGGAMDLVPKFLTFELSFEEGYSDFENV
FT                   DNDHLWSVITRDPKSWVKPNNFGGNNFDIVEFMSQQPSVEYHQPRTLKEISLALQLKKD
FT                   LFDSGLVSGSQTILDVPLFNKKG"
XX
SQ   Sequence 2572 BP; 783 A; 461 C; 476 G; 851 T; 1 other;

am087549 Length: 2572  29-JUN-2006  Type: N  Check: 4802  ..

       1  taaagccttt aatactaaag aaaagtcaca tacaataatt tgataaaatt
      51  actgcaagca acactcttta gaatgaagaa tttatattct tggcaaagag
     101  gttcgaaaga cctcttccat gttaataaag gactattttt agttcttaaa
     151  ttagtctggg gtggaacaac tatatccaaa ttaaagtcgt tttatgtgtt
     201  actagttcac cttaaaacat tacaagaaaa atcaggtctt gcatatactt
     251  gtcagtatat gaaggcttgt gccatctatg taatgaaata cgtggctaag
     301  gatcccaata agttagcaat taatagtttt tctattttag tatccttaac
     351  tgattcgggt atacctagaa ttattcctag ttatatcagg taccaattaa
     401  gaagaggaaa taagaattct attaaagctc tattgacagt cttcaatctg
     451  tatagggttc tggaataccc gggagtatta aaactctcga ctattacaga
     501  ttctagtagt tttactctac cttcggattt ttcaggttga ttggcagaat
     551  ttatgagatc acagtctatg actgtacctt ttaaaatttc tgatcttctt
     601  aatcctttct tgatttattc aagtggaccc tgttcaccca aaggtatgaa
     651  taacactgca ggttggattc tagcctttag aagattgaaa gccttgtttc
     701  ttgacaagga attctttctt actttgctag atccctataa agagagaaga
     751  caatggtgag aatcttctcc ttttattaag tactttaatg cgatcctccc
     801  tgactttgac gacaatgttt ccttagggaa actagctttt aaggaggaac
     851  cgggaaaggt aagagtgttt gctatggcag actgtataac tcaatgagtg
     901  ttacatcctc ttcatcagta cttattttct atcttgaaac aaattagcat
     951  cgttgatgct acctttgatc aagaagaagg ggttaaaacc ctttctgcga
    1001  aaataaaagc tggaaagaga gtagtattct ctcttgattt atcagcagcc
    1051  acagacagay tacctctaac tattcaagct cagattctga accatatagt
    1101  tcccaaatta ggtgaccatt gagctaatct tctggtgaac agagattact
    1151  cagtgccgaa ccatactact ctaccagtta atcctggtac tgttaggtat
    1201  ggagcggggc aacctatggg ggcttatagt tcatgagcta tgcttgccct
    1251  aacacatcac ttcattgttc agtattgcgc tttcaaagtc taccacacta
    1301  actcattctt caaagattat ttaatcttgg gagatgactt attgttgtta
    1351  gatgcgaaag tcgcaaaaca gtacttgcaa gtgatgaacc aactggatgt
    1401  cggagttaat ctagcaaaat ccctaatctc agttagaggt tatggtgaat
    1451  ttgctaaaca attcttatct ccagatggtc ctcttcaagg agttagttta
    1501  agagaattct cgtcgttaaa agatggaatg tctaacattc tatccttatc
    1551  gacaaagatg aatcttaaac ccgctctctt gttgagattg tttgggttcg
    1601  gttctaaatc aattggtcat tctactttac ctttcacaag gtattcactg
    1651  agatcttctc ttgatcactt gttcatcagt ccgcttgcga actcttcgaa
    1701  taagtgatta gattatttct catgtataag acatttaaaa tctctcactc
    1751  taaataactc attattgaga tatttcttgt ggggatttga atttctaaaa
    1801  tacaagtgag tctatatgaa agtgagggag aatgaacaac ttatgttgaa
    1851  acatggaacg catcactacc atcagattgt aagtgaaacc ttactgaatt
    1901  actgatgtcc ttctcctacg gatgaggtgt tgaaatcacc gaatattgct
    1951  gatttgtcag caggattctt cttttcaact cctcccatag ataaggcatc
    2001  ttttaaggtg ttgatgatta atcacatcaa catcttgttt tcatgtgggt
    2051  ctctctttac agagctgatg aatggtggtg caatggatct agtccctaaa
    2101  ttcttaacat ttgagttgtc ctttgaagag ggctactcag attttgagaa
    2151  tgttgataac gatcatctat gatccgttat cacaagggat ccgaaatctt
    2201  gggttaaacc caataatttt ggaggaaaca attttgatat tgttgaattt
    2251  atgagccagc aaccatcggt agagtaccac caacctagaa ctcttaaaga
    2301  gatttcttta gctttacaac tgaagaaaga tctctttgat agtggtttgg
    2351  ttagtggatc tcaaactata ctcgatgtac ctctcttcaa taagaaaggg
    2401  tagactggac tctgacaaga ggtcttgtct ctggttgaga atatacagtt
    2451  ggaggtgacc attataatta cttcgtaatt ataataggaa gacactcccg
    2501  agttatattt ataaccagta gactagagat gagacacctt cgtcattgaa
    2551  cattttcagt cctcataaag ga