Sequence of DPV Ophiostoma mitovirus 1b
Ophiostoma mitovirus 1b RdRp gene for RNA-dependent RNA polymerase, genomic RNA
ACC No: AM087549
Dated: 2006-06-29 | Length: 2572 | CRC: -1806666620
ID AM087549; SV 1; linear; genomic RNA; STD; VRL; 2572 BP. XX AC AM087549; XX DT 29-JUN-2006 (Rel. 88, Created) DT 29-JUN-2006 (Rel. 88, Last updated, Version 1) XX DE Ophiostoma mitovirus 1b RdRp gene for RNA-dependent RNA polymerase, genomic DE RNA XX KW RdRp gene; RNA-dependent RNA polymerase. XX OS Ophiostoma mitovirus 1b OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae; OC Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-2572 RA Buck K.W.; RT ; RL Submitted (25-SEP-2005) to the EMBL/GenBank/DDBJ databases. RL Buck K.W., Biology, Imperial College London, Sir Alexander Fleming RL Building, London, SW7 2AZ, UNITED KINGDOM. XX RN [2] RA Doherty M., Coutts R.H.A., Brasier C.M., Buck K.W.; RT "Sequence of RNA-dependent RNA Polymerase Genes Provides Evidence for Three RT More Distinct Mitoviruses in Ophiostoma Novo-ulmi Isolate Ld"; RL Virus Genes 33(1):41-44(2006). XX FH Key Location/Qualifiers FH FT source 1. .2572 FT /organism="Ophiostoma mitovirus 1b" FT /specific_host="Ophiostoma novo-ulmi" FT /isolate="Ld" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /virion FT /db_xref="taxon:348095" FT CDS 73. .2403 FT /transl_table=4 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /protein_id="CAJ32467.1" FT /translation="MKNLYSWQRGSKDLFHVNKGLFLVLKLVWGGTTISKLKSFYVLLV FT HLKTLQEKSGLAYTCQYMKACAIYVMKYVAKDPNKLAINSFSILVSLTDSGIPRIIPSY FT IRYQLRRGNKNSIKALLTVFNLYRVLEYPGVLKLSTITDSSSFTLPSDFSGWLAEFMRS FT QSMTVPFKISDLLNPFLIYSSGPCSPKGMNNTAGWILAFRRLKALFLDKEFFLTLLDPY FT KERRQWWESSPFIKYFNAILPDFDDNVSLGKLAFKEEPGKVRVFAMADCITQWVLHPLH FT QYLFSILKQISIVDATFDQEEGVKTLSAKIKAGKRVVFSLDLSAATDRLPLTIQAQILN FT HIVPKLGDHWANLLVNRDYSVPNHTTLPVNPGTVRYGAGQPMGAYSSWAMLALTHHFIV FT QYCAFKVYHTNSFFKDYLILGDDLLLLDAKVAKQYLQVMNQLDVGVNLAKSLISVRGYG FT EFAKQFLSPDGPLQGVSLREFSSLKDGMSNILSLSTKMNLKPALLLRLFGFGSKSIGHS FT TLPFTRYSLRSSLDHLFISPLANSSNKWLDYFSCIRHLKSLTLNNSLLRYFLWGFEFLK FT YKWVYMKVRENEQLMLKHGTHHYHQIVSETLLNYWCPSPTDEVLKSPNIADLSAGFFFS FT TPPIDKASFKVLMINHINILFSCGSLFTELMNGGAMDLVPKFLTFELSFEEGYSDFENV FT DNDHLWSVITRDPKSWVKPNNFGGNNFDIVEFMSQQPSVEYHQPRTLKEISLALQLKKD FT LFDSGLVSGSQTILDVPLFNKKG" XX SQ Sequence 2572 BP; 783 A; 461 C; 476 G; 851 T; 1 other; am087549 Length: 2572 29-JUN-2006 Type: N Check: 4802 .. 1 taaagccttt aatactaaag aaaagtcaca tacaataatt tgataaaatt 51 actgcaagca acactcttta gaatgaagaa tttatattct tggcaaagag 101 gttcgaaaga cctcttccat gttaataaag gactattttt agttcttaaa 151 ttagtctggg gtggaacaac tatatccaaa ttaaagtcgt tttatgtgtt 201 actagttcac cttaaaacat tacaagaaaa atcaggtctt gcatatactt 251 gtcagtatat gaaggcttgt gccatctatg taatgaaata cgtggctaag 301 gatcccaata agttagcaat taatagtttt tctattttag tatccttaac 351 tgattcgggt atacctagaa ttattcctag ttatatcagg taccaattaa 401 gaagaggaaa taagaattct attaaagctc tattgacagt cttcaatctg 451 tatagggttc tggaataccc gggagtatta aaactctcga ctattacaga 501 ttctagtagt tttactctac cttcggattt ttcaggttga ttggcagaat 551 ttatgagatc acagtctatg actgtacctt ttaaaatttc tgatcttctt 601 aatcctttct tgatttattc aagtggaccc tgttcaccca aaggtatgaa 651 taacactgca ggttggattc tagcctttag aagattgaaa gccttgtttc 701 ttgacaagga attctttctt actttgctag atccctataa agagagaaga 751 caatggtgag aatcttctcc ttttattaag tactttaatg cgatcctccc 801 tgactttgac gacaatgttt ccttagggaa actagctttt aaggaggaac 851 cgggaaaggt aagagtgttt gctatggcag actgtataac tcaatgagtg 901 ttacatcctc ttcatcagta cttattttct atcttgaaac aaattagcat 951 cgttgatgct acctttgatc aagaagaagg ggttaaaacc ctttctgcga 1001 aaataaaagc tggaaagaga gtagtattct ctcttgattt atcagcagcc 1051 acagacagay tacctctaac tattcaagct cagattctga accatatagt 1101 tcccaaatta ggtgaccatt gagctaatct tctggtgaac agagattact 1151 cagtgccgaa ccatactact ctaccagtta atcctggtac tgttaggtat 1201 ggagcggggc aacctatggg ggcttatagt tcatgagcta tgcttgccct 1251 aacacatcac ttcattgttc agtattgcgc tttcaaagtc taccacacta 1301 actcattctt caaagattat ttaatcttgg gagatgactt attgttgtta 1351 gatgcgaaag tcgcaaaaca gtacttgcaa gtgatgaacc aactggatgt 1401 cggagttaat ctagcaaaat ccctaatctc agttagaggt tatggtgaat 1451 ttgctaaaca attcttatct ccagatggtc ctcttcaagg agttagttta 1501 agagaattct cgtcgttaaa agatggaatg tctaacattc tatccttatc 1551 gacaaagatg aatcttaaac ccgctctctt gttgagattg tttgggttcg 1601 gttctaaatc aattggtcat tctactttac ctttcacaag gtattcactg 1651 agatcttctc ttgatcactt gttcatcagt ccgcttgcga actcttcgaa 1701 taagtgatta gattatttct catgtataag acatttaaaa tctctcactc 1751 taaataactc attattgaga tatttcttgt ggggatttga atttctaaaa 1801 tacaagtgag tctatatgaa agtgagggag aatgaacaac ttatgttgaa 1851 acatggaacg catcactacc atcagattgt aagtgaaacc ttactgaatt 1901 actgatgtcc ttctcctacg gatgaggtgt tgaaatcacc gaatattgct 1951 gatttgtcag caggattctt cttttcaact cctcccatag ataaggcatc 2001 ttttaaggtg ttgatgatta atcacatcaa catcttgttt tcatgtgggt 2051 ctctctttac agagctgatg aatggtggtg caatggatct agtccctaaa 2101 ttcttaacat ttgagttgtc ctttgaagag ggctactcag attttgagaa 2151 tgttgataac gatcatctat gatccgttat cacaagggat ccgaaatctt 2201 gggttaaacc caataatttt ggaggaaaca attttgatat tgttgaattt 2251 atgagccagc aaccatcggt agagtaccac caacctagaa ctcttaaaga 2301 gatttcttta gctttacaac tgaagaaaga tctctttgat agtggtttgg 2351 ttagtggatc tcaaactata ctcgatgtac ctctcttcaa taagaaaggg 2401 tagactggac tctgacaaga ggtcttgtct ctggttgaga atatacagtt 2451 ggaggtgacc attataatta cttcgtaatt ataataggaa gacactcccg 2501 agttatattt ataaccagta gactagagat gagacacctt cgtcattgaa 2551 cattttcagt cctcataaag ga