Sequence of DPV Cymbidium mosaic virus

Cymbidium mosaic virus partial CP gene for coat protein, isolate FRA10, genomic RNA

ACC No: AM236027

Dated: 2007-03-24 | Length: 645 | CRC: -53481862

                
ID   AM236027; SV 1; linear; genomic RNA; STD; VRL; 645 BP.
XX
AC   AM236027;
XX
DT   01-APR-2006 (Rel. 87, Created)
DT   24-MAR-2007 (Rel. 91, Last updated, Version 2)
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DE   Cymbidium mosaic virus partial CP gene for coat protein, isolate FRA10,
DE   genomic RNA
XX
KW   coat protein; CP gene.
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OS   Cymbidium mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-645
RA   Grisoni M.;
RT   ;
RL   Submitted (10-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Grisoni M., UMR 53-PVBMT, Cirad, 97410, 97410 Saint Pierre, REUNION.
XX
RN   [2]
RA   Moles M., Delatte H., Farreyrol K., Grisoni M.;
RT   "Evidence that Cymbidium mosaic virus (CymMV) isolates divide into two
RT   subgroups based on nucleotide diversity of coat protein and replicase
RT   genes";
RL   Arch. Virol. 152(4):705-715(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .645
FT                   /organism="Cymbidium mosaic virus"
FT                   /specific_host="Vanilla bahiana"
FT                   /isolate="FRA10"
FT                   /mol_type="genomic RNA"
FT                   /country="France:Cherbourg"
FT                   /virion
FT                   /db_xref="taxon:12178"
FT   CDS             1. .>645
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q1XE49"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q1XE49"
FT                   /protein_id="CAJ84634.1"
FT                   /translation="MGEPTPTPAATYSAADPTSSPKLADLTAIKYSPVTSSIATPEEIK
FT                   AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGVCPTKPDVRRAALAAQIF
FT                   VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP
FT                   AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLY"
XX
SQ   Sequence 645 BP; 127 A; 233 C; 152 G; 133 T; 0 other;

am236027 Length: 645  24-MAR-2007  Type: N  Check: 9324  ..

       1  atgggagagc ccactccgac tccagctgcc acctactccg ctgctgaccc
      51  cacttcatca cccaagctgg ccgacctcac cgccatcaag tactcaccgg
     101  tcacctcatc aatcgccaca cccgaagaga tcaaggccat aacccagctg
     151  tgggttaaca accttggcct ccccgccgac accgtaggta ccgcagccat
     201  tgatttggct cgtgcttacg ctgacgtcgg ggcttccaag tctgctaccc
     251  tgcttggtgt ctgccccacg aagccagacg tccgccgcgc tgctcttgcc
     301  gcgcagatct tcgtggccaa tgtcactccc cgccagtttt gcgcttacta
     351  cgcaaaagtg gtgtggaatc tgatgctggc caccaatgat ccgcccgcca
     401  attgggccaa ggctggtttc caggaggata cccggtttgc cgcctttgat
     451  ttcttcgatg ccgtcgactc cacagccgct ttggaacccg ctgaatggca
     501  acgtcgccct accgaccgtg agcgtgccgc ccactcaatc gggaagtacg
     551  gtgctcttgc ccgccagcgc atccagaacg gcaacctcat caccaacatt
     601  gccgaggtta ccaagggcca tcttggctcc actaacaccc tctat