Sequence of DPV Tomato leaf curl Guangxi virus

Tomato leaf curl Guangxi virus complete genome, isolate GX-3

ACC No: AM236786

Dated: 2007-07-16 | Length: 2752 | CRC: 1791642574

                
ID   AM236786; SV 1; circular; genomic DNA; STD; VRL; 2752 BP.
XX
AC   AM236786;
XX
DT   01-SEP-2006 (Rel. 89, Created)
DT   16-JUL-2007 (Rel. 92, Last updated, Version 2)
XX
DE   Tomato leaf curl Guangxi virus complete genome, isolate GX-3
XX
KW   AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein;
KW   AC4 gene; AC4 protein; AV1 gene; AV2 gene; AV2 protein; coat protein;
KW   complete genome.
XX
OS   Tomato leaf curl Guangxi virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2752
RA   Zhou X.P.;
RT   ;
RL   Submitted (16-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Zhou X.P., Zhejiang University, Institute of Biotechnology, No.268, Kaixuan
RL   Road, Hangzhou, Zhejiang, 310029, CHINA.
XX
RN   [2]
RA   Xu Y.P., Cai X.Z., Zhou X.P.;
RT   "Tomato leaf curl Guangxi virus is a distinct monopartite begomovirus
RT   species";
RL   Eur. J. Plant Pathol. 118(3):287-294(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2752
FT                   /organism="Tomato leaf curl Guangxi virus"
FT                   /specific_host="tomato"
FT                   /isolate="GX-3"
FT                   /mol_type="genomic DNA"
FT                   /country="China:Guangxi"
FT                   /virion
FT                   /db_xref="taxon:377609"
FT   CDS             145. .495
FT                   /transl_table=1
FT                   /gene="AV2"
FT                   /product="AV2 protein"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q0KFW7"
FT                   /protein_id="CAJ86018.1"
FT                   /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT                   ILVVRARDYVEASRRYSHFHSRIQGASSVEFRQPLYQPCCCPHCPRHKQKEIMGQSAHV
FT                   SKAQDVQDVQKP"
FT   CDS             305. .1078
FT                   /transl_table=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q0KFW6"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q0KFW6"
FT                   /protein_id="CAJ86019.1"
FT                   /translation="MSKRPADIVISTPASKVRRRLNFDSPYTSRAAAPTVLVTNKRKSW
FT                   VNRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGVGLTH
FT                   RVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNE
FT                   PSTATVKNDHRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNHVVYNHQEAGKYEN
FT                   HTENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
FT   CDS             complement(1075. .1479)
FT                   /transl_table=1
FT                   /gene="AC3"
FT                   /product="AC3 protein"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q0KFW5"
FT                   /protein_id="CAJ86020.1"
FT                   /translation="MDFRTGELLTATQCESGVYTWTIKNPLYFKITKHHERPFNTNHDI
FT                   ITIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLNNLGVISINN
FT                   VIRACNHVLWDVLEKTEYVTHSNIIKFNLY"
FT   CDS             complement(1220. .1627)
FT                   /transl_table=1
FT                   /gene="AC2"
FT                   /product="AC2 protein"
FT                   /db_xref="GOA:Q0KFW4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q0KFW4"
FT                   /protein_id="CAJ86021.1"
FT                   /translation="MQNSSPSTAHCTQVPIKVQHRIAKRKPIRRRRVDLTCGCSYYFGI
FT                   DCANHGFSHGGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTIQPQ
FT                   PEESVGNTPVFSDLPDLDSLTTSDLAFLKSI"
FT   CDS             complement(1527. .2615)
FT                   /transl_table=1
FT                   /gene="AC1"
FT                   /product="AC1 protein"
FT                   /db_xref="GOA:Q0KFW3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:Q0KFW3"
FT                   /protein_id="CAJ86022.1"
FT                   /translation="MAPPKRFQIYAKNFFLTYPQCSLTKEEALSQIKNLNTPTNKKYIK
FT                   ICSELHEDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYL
FT                   EKDGDTLDWGEFQIDGRSARGGQQTANDAYAQAINSGSKSEALRVIKELAPKDYVLQFH
FT                   NLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVSGAAARPWRPKSIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWALKNAEFITLNSPL
FT                   YSGTNQSATQNSQEEAHSETES"
FT   CDS             complement(2168. .2464)
FT                   /transl_table=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q0KFW2"
FT                   /protein_id="CAJ86023.1"
FT                   /translation="MKMGALISTCLSNSKANTNAKITDSSTWSPQPGQHISIRTFRELN
FT                   PAPTSSPIWRRTETPSTGESFRSMEDLQEGDNRQPMTLTPRQLTAAVSQRLLE"
XX
SQ   Sequence 2752 BP; 728 A; 550 C; 611 G; 863 T; 0 other;

am236786 Length: 2752  16-JUL-2007  Type: N  Check: 7973  ..

       1  accggagggc cgcgcaaagt gttaaagtgg tcccccctcc actaactgac
      51  aaagacatgt cggccaataa aaacgctccc tcaaagttaa attagtggtg
     101  gtccctctat ttaaacttcc ttagcaagta gttcattccg cactatgtgg
     151  gatccattgc ttaatgagtt tcctgaaacc gttcacggtt ttaggtgcat
     201  gttagcaatt aagtatttgc agttagtaga aaatacatac tctccggata
     251  cgttagggta cgatttaatt cgtgatttaa ttttagttgt tcgtgctcga
     301  gattatgtcg aagcgtcccg cagatatagt catttccact cccgcatcca
     351  aggtgcgtcg tcggttgaat ttcgacagcc cttataccag ccgtgctgct
     401  gcccccactg tcctcgtcac aaacaaaagg aaatcatggg tcaatcggcc
     451  catgtatcga aagcccagga tgtacaggat gttcagaagc cctgatgttc
     501  cacgaggctg tgaaggacct tgcaaagtcc aatctttcga tgcaaagaat
     551  gatatcggtc acatgggtaa ggtcatatgt ctgtctgatg ttactagggg
     601  agtgggtttg acccatcgtg ttggtaaacg tttctgcgtt aagtcactgt
     651  attttgttgg caagatttgg atggatgaaa acatcaaggt gaagaaccac
     701  actaacaccg ttatgttctg gatagtgagg gatagacgtc ctagtggaac
     751  tcctaatgat tttcagcagg tgtttaatgt ttacgataat gaaccttcta
     801  cggctaccgt caagaacgac catcgtgatc gtttccaggt gttgaggagg
     851  ttccaggcaa cagttactgg tggacagtat gcagctaagg agcaggcgat
     901  aattaggaag ttttatcgtg ttaataatca tgttgtgtac aatcaccaag
     951  aagctgggaa gtacgagaat cacactgaga atgctctttt gttgtacatg
    1001  gcatgtactc atgcctctaa tcccgtgtat gctactttga aagtaaggag
    1051  ttatttctat gactccgtta cgaattaata aagattgaat tttattatat
    1101  ttgaatgtgt tacatattct gttttttcca atacatccca taatacatga
    1151  ttacatgctc taattacatt gttaatacta attacaccca aattatttaa
    1201  atatttcata cattgaaccc taaatactct taagaaacgc caagtctgag
    1251  gttgtaagcg agtccagatc tggaagatca gaaaacactg gtgtattccc
    1301  aacgctttcc tcaggttgtg gttgaattgt atttggatcg ttatgatgtc
    1351  gtggttggtg ttgaatggtc tctcgtggtg cttggttatc ttgaaatata
    1401  ggggattttt gatcgtccag gtatacacgc cactctcgca ttgagttgca
    1451  gtgagtaatt cccccgtgcg aaaatccatg atttgcacaa tctatgccga
    1501  agtagtatga gcacccgcac gttagatcaa ctctccgtct ccgaatgggc
    1551  ttcctcttgg ctattctgtg ttgcactttg attggtacct gagtacaatg
    1601  ggctgttgag ggtgatgaat tctgcattct ttaatgccca atcttttaat
    1651  gctgaatttt tatcctcatt caagtactct ttatatgatg atgttgggcc
    1701  tggattgcaa aggaagatag ttgggattcc acctttaatt tgaactggct
    1751  tcccgtactt agtgttgctt tgccagtccc tttgggcccc catgaattct
    1801  ttaaagtgct ttagatagtg ggggtctacg tcatcaatga cgttatacca
    1851  agcatcatta ctgtatactt ttgggctgag atcaagatgt ccacacaaat
    1901  aattgtgtgg tcccagtgat ctggcccaca ttgttttacc tgtacgacta
    1951  tcaccttcta tcacaatact tttgggtctc caaggccgcg cagcggcacc
    2001  actcacattc tcagaaaccc actcttcaag ttcttctgga acttgatcga
    2051  atgaagaaga aagaaatgga caaacaaaaa cctctaaagg aggtgcaaaa
    2101  atcctatcta agttagagtt taaattatga aattgtaaaa cataatcttt
    2151  aggagctaac tccttaatta ctctaagagc ctctgactta ctgccgctgt
    2201  taattgcctg ggcgtaagcg tcattggctg tctgttgtcc ccctcttgca
    2251  gatcttccat cgatctgaaa ctctccccag tcgagggtgt ctccgtcctt
    2301  ctccagatag gacttgacgt cggagctgga tttagctccc tgaatgttcg
    2351  gatggaaatg tgctgacctg gttggggaga ccaggtcgaa gaatctgtta
    2401  ttttggcatt tgtatttgcc ttcgaattgg ataagcacgt ggagatgagg
    2451  gctcccatct tcatgaagtt cgctgcagat tttgatgtat tttttatttg
    2501  ttggggtgtt taggtttttt atttgggaaa gtgcctcttc tttagtaaga
    2551  gagcattgtg gataagtgag gaaaaagttt ttggcatata tttgaaaacg
    2601  cttaggagga gccattgact tggtcaatcg gtactcaaca aacttggcta
    2651  tgcaatcggt gattggtact caatatatag tgagtaccaa atggcatgat
    2701  tgtaatttct taaagaaatt caaattgcaa aagcggccat ccgtataata
    2751  tt