Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus-[Pumpkin:New Delhi] segment DNA-A, complete sequence, isolate 2
ACC No: AM286434
Dated: 2007-07-10 | Length: 2739 | CRC: 1511347798
ID AM286434; SV 1; circular; genomic DNA; STD; VRL; 2739 BP.
XX
AC AM286434;
XX
DT 10-JUL-2007 (Rel. 92, Created)
DT 10-JUL-2007 (Rel. 92, Last updated, Version 1)
XX
DE Tomato leaf curl New Delhi virus-[Pumpkin:New Delhi] segment DNA-A,
DE complete sequence, isolate 2
XX
KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AC4 protein; AV1 gene; AV2 gene;
KW AV2 protein; coat protein; replication enhancer protein;
KW replication-associated protein; transcriptional activator protein.
XX
OS Tomato leaf curl New Delhi virus-[Pumpkin:New Delhi]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2739
RA Maruthi M.N.;
RT ;
RL Submitted (10-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL Maruthi M.N., Natural Resources Institute, University of Greenwich, Central
RL Avenue, Chatham Maritime, Kent, ME4 4TB, UNITED KINGDOM.
XX
RN [2]
RA Maruthi M.N., Rekha A.R., Muniyappa V.;
RT "Pumpkin yellow vein mosaic disease is caused by two distinct
RT begomoviruses; complete viral sequences and comparative transmission by an
RT indigenous and the introduced B-biotype Bemisia tabaci";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2739
FT /organism="Tomato leaf curl New Delhi virus-[Pumpkin:New
FT Delhi]"
FT /segment="DNA-A"
FT /specific_host="pumpkin"
FT /isolate="2"
FT /mol_type="genomic DNA"
FT /country="India:New Delhi"
FT /virion
FT /db_xref="taxon:393597"
FT CDS 120. .458
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="CAL15163.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ
FT KTQNVQNV"
FT CDS 280. .1050
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAL15164.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHANSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1047. .1457)
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="CAL15165.1"
FT /translation="MITDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQH
FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI
FT YNVIRAVYHVLDNVLERTIDVQTSYDIKLDIY"
FT CDS complement(1177. .1596)
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="CAL15166.1"
FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISIN
FT CHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQALPNTARHHQDSNTVQPQP
FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP"
FT CDS complement(1499. .2584)
FT /gene="AC1"
FT /product="replication-associated protein"
FT /function="virus replication"
FT /protein_id="CAL15167.1"
FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK
FT ICRELHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPSRSTHFHPNIQGAKSASDVKAYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKDDALNVLKELAPKDYVLQFH
FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGD
FT SRTGKTMWARRLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL
FT YSGRENIAPAEEEEEHSQEAS"
FT CDS complement(2251. .2427)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAL15168.1"
FT /translation="MGLRISMFSSNSKGNTSARITDSSTWFPLVGQHISIRTFRELNQH
FT RTSKHTSTRTETS"
XX
SQ Sequence 2739 BP; 749 A; 591 C; 619 G; 780 T; 0 other;
am286434 Length: 2739 10-JUL-2007 Type: N Check: 2914 ..
1 accgaatggc cgcgcaaatt tttaagtggg ccctcaacca atgaaattca
51 agatacatgg cttatttagt gcgtgggggc caataaatag acttgctcac
101 caagtttgga tccacaaaca tgtgggatcc actattgcac gaatttccag
151 aaagcgttca tggtctaagg tgcatgctag ctgtaaaata tctccaagag
201 atagagaaga actattcccc agacacagtc ggctacgatc ttgtccgaga
251 tctcattctt gttctccgag caaagaacta tggcgaagcg accagcagat
301 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga
351 cagcccctat ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag
401 caaaggcctg gaccaacagg ccgatgaaca gaaaacccag aatgtacaga
451 atgtatagaa gtcccgacgt gccaaggggc tgtgaaggcc cttgtaaggt
501 gcaatctttt gaatctaggc acgatgtctc tcatattggc aaagtcatgt
551 gtgttagtga tgttacccga ggaactggac tcacacatcg cgtagggaag
601 cgattctgtg tgaaatctgt ctatgtgctg ggaaagatat ggatggatga
651 aaacatcaag acaaaaaacc atgctaacag tgtcatgttt tttttagttc
701 gtgaccgtcg tcctacagga tccccccaag attttgggga agtttttaac
751 atgtttgaca atgaaccgag cacagcaacg gtgaagaaca tgcatcgtga
801 tcgttatcaa gtcttacgga agtggcatgc gactgtgacg ggaggaacat
851 atgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat
901 tatgtagttt ataatcaaca agaggcgggc aagtatgaga atcatactga
951 aaatgcatta atgttgtata tggcctgtac tcacgcatca aatcctgtat
1001 atgctacttt gaaaatccgg atctattttt atgattcggt aacaaattaa
1051 taaatatcaa gctttatatc atatgaagtc tgtacatcaa ttgttcgctc
1101 caatacatta tccaaaacat gataaactgc tcttattaca ttataaattc
1151 ctattacacc gagcatatcc aggtacttaa ggacctgggt tttgaagact
1201 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt
1251 tagaaaacac ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact
1301 gtatttgaat cttgatgatg tcgtgctgtg ttaggaaggg cctgctgtcg
1351 tgtttcaaaa ttttgaaata caggggattt cgaatttccc aggtatatac
1401 gccactctct gtacgatccg cagtgatgta ctcccctgtg cgtgaatccg
1451 tgatcatggc agttgatcga tatgtaatac gaacacccac acggcagatc
1501 aactcgcctc ctgcgaatgc tcttcttctt cttctgcggg agcgatgttt
1551 tcgcgaccgg aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt
1601 gattgcccac tgcttcagtg ctgcattttt ttcttcgtcc agatattcct
1651 tatagctgct gtttggacct ttattgcaca ggaagatagt gggaattcca
1701 cctttaatca tgactggctt tccgtacttg gtgttgcttt gccagtcacg
1751 ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt
1801 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga
1851 tcaagatgtc cacacaagta attgtgtggt cccaagcgac gagcccacat
1901 tgttttgccc gttctactat ccccctctat gactatgctt atgggcctaa
1951 aaggccgcgc agcggcacac accacattgg acgagaccca atcgacgagg
2001 tctgccggaa ctctgtcgaa ggatgaaatt gaaaaaggag aaacataaac
2051 ctcggaagga ggttgaaaaa tgcgatctaa attggtattt aaattgtgaa
2101 actgcagaac ataatccttt ggggctaatt cctttaatac gttcaacgca
2151 tcatctttat ttcccgtatt aatcgccttt gcatatgcat cgttggccgt
2201 ctgctgacca ccacgagcag atcgtccatc gatctggaaa acaccccatt
2251 ctaggacgtc tccgtccttg tcgatgtatg ctttgacgtc cgatgctgat
2301 ttagctccct gaatgttcgg atggaaatgt gttgaccgac taggggaaac
2351 caagtcgaag aatctgttat tcttgcactg gtatttccct tcgaattgga
2401 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tcgacagatc
2451 ttgatgaatt tcttcgaagt cggggtttct agggtttgca attgggaaag
2501 tgcctcttcc tttgtaagag agcactttgg atatgtgagg aaatagtttt
2551 tggcatttac tctaaaacga cgtggcgaag ccataaaacc tgtcgttttg
2601 attcggcgtc cctcaactta tctatgtgat tggtgtctgg agtcctatat
2651 ataggtaaga caccatatgg cagaattgta attttgaaaa gaaaattact
2701 ttaattcaaa ttccctatag cggccattcg tctaatatt